Wall clock time and date at job start Tue Mar 31 2020 20:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46822 * 2 1 4 4 C 1.50697 * 109.47398 * 119.99611 * 2 1 3 5 5 O 1.21282 * 119.99644 * 98.24608 * 4 2 1 6 6 N 1.34774 * 120.00292 * 278.25086 * 4 2 1 7 7 C 1.46926 * 120.63366 * 354.62478 * 6 4 2 8 8 C 1.53191 * 108.77592 * 233.63470 * 7 6 4 9 9 C 1.53036 * 109.31323 * 305.36403 * 8 7 6 10 10 C 1.53033 * 109.54188 * 61.36309 * 9 8 7 11 11 H 1.09001 * 109.52231 * 58.60522 * 10 9 8 12 12 C 1.53001 * 109.50087 * 178.68430 * 10 9 8 13 13 N 1.46899 * 109.46971 * 294.84086 * 12 10 9 14 14 C 1.46904 * 110.99770 * 179.97438 * 13 12 10 15 15 C 1.50695 * 109.46935 * 180.02562 * 14 13 12 16 16 O 1.21295 * 120.00120 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99590 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99551 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99732 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99961 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99884 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47077 * 90.00378 * 22 20 18 24 24 H 1.48499 * 109.47500 * 210.00065 * 22 20 18 25 25 H 1.48501 * 109.47415 * 330.00750 * 22 20 18 26 26 C 1.46927 * 120.63017 * 174.64902 * 6 4 2 27 27 C 1.52994 * 109.47219 * 240.00140 * 2 1 3 28 28 C 1.53000 * 117.50077 * 128.74449 * 27 2 1 29 29 C 1.53005 * 117.49857 * 60.08197 * 27 2 1 30 30 H 1.08996 * 109.47572 * 55.09343 * 1 2 3 31 31 H 1.09001 * 109.47338 * 175.09689 * 1 2 3 32 32 H 1.09003 * 109.46909 * 295.09735 * 1 2 3 33 33 H 1.09002 * 109.57920 * 353.41793 * 7 6 4 34 34 H 1.08991 * 109.58616 * 113.69889 * 7 6 4 35 35 H 1.09000 * 109.49472 * 65.31429 * 8 7 6 36 36 H 1.09001 * 109.49913 * 185.40692 * 8 7 6 37 37 H 1.09004 * 109.45538 * 301.34210 * 9 8 7 38 38 H 1.08996 * 109.46177 * 181.38681 * 9 8 7 39 39 H 1.08998 * 109.47014 * 174.84194 * 12 10 9 40 40 H 1.08996 * 109.46609 * 54.84183 * 12 10 9 41 41 H 1.00905 * 111.00072 * 303.95077 * 13 12 10 42 42 H 1.09004 * 109.46738 * 300.00239 * 14 13 12 43 43 H 1.08998 * 109.47169 * 59.99766 * 14 13 12 44 44 H 0.96993 * 120.00361 * 359.97438 * 17 15 14 45 45 H 0.97001 * 119.99715 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.58584 * 6.58333 * 26 6 4 47 47 H 1.08997 * 109.70786 * 246.22489 * 26 6 4 48 48 H 1.08994 * 115.55224 * 274.41875 * 27 2 1 49 49 H 1.09010 * 117.49877 * 359.97438 * 28 27 2 50 50 H 1.08996 * 117.50292 * 145.02395 * 28 27 2 51 51 H 1.09000 * 117.50183 * 214.97502 * 29 27 2 52 52 H 1.08997 * 117.49713 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.3766 -1.8713 1.1624 6 7 2.0992 -0.0555 2.4066 7 6 1.7982 1.3806 2.4820 8 6 2.9749 2.0964 3.1525 9 6 3.2605 1.4422 4.5062 10 6 3.6440 -0.0242 4.2953 11 1 4.5204 -0.0823 3.6499 12 6 3.9610 -0.6687 5.6462 13 7 5.1561 -0.0371 6.2215 14 6 5.4910 -0.6316 7.5225 15 6 6.7188 0.0406 8.0807 16 8 7.2618 0.9272 7.4560 17 7 7.2136 -0.3436 9.2741 18 6 8.3310 0.2676 9.7817 19 1 8.8144 1.0570 9.2254 20 6 8.8408 -0.1281 11.0123 21 7 8.2521 -1.0883 11.6893 22 14 10.3628 0.7051 11.7042 23 1 9.9570 1.8727 12.5272 24 1 11.1140 -0.2584 12.5484 25 1 11.2273 1.1634 10.5871 26 6 2.4748 -0.7642 3.6376 27 6 2.0400 -0.7212 -1.2492 28 6 3.0763 0.0040 -2.1101 29 6 1.6373 -0.1483 -2.6096 30 1 -0.3634 0.5880 -0.8427 31 1 -0.3634 -1.0239 -0.0878 32 1 -0.3633 0.4359 0.9307 33 1 1.6542 1.7769 1.4769 34 1 0.8924 1.5338 3.0684 35 1 3.8575 2.0189 2.5176 36 1 2.7247 3.1468 3.3016 37 1 2.3695 1.4982 5.1317 38 1 4.0815 1.9653 4.9964 39 1 4.1447 -1.7339 5.5064 40 1 3.1165 -0.5310 6.3214 41 1 5.9373 -0.0948 5.5854 42 1 4.6569 -0.4933 8.2106 43 1 5.6850 -1.6967 7.3962 44 1 6.7791 -1.0523 9.7738 45 1 8.6083 -1.3647 12.5482 46 1 2.7772 -1.7829 3.3950 47 1 1.6264 -0.7879 4.3215 48 1 2.1253 -1.8045 -1.1647 49 1 3.3944 0.9952 -1.7866 50 1 3.8431 -0.6022 -2.5922 51 1 1.4582 -0.8547 -3.4202 52 1 1.0087 0.7422 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752793529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:12 Heat of formation + Delta-G solvation = -59.736755 kcal Electronic energy + Delta-G solvation = -29072.426297 eV Core-core repulsion = 25071.903799 eV Total energy + Delta-G solvation = -4000.522498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.75804 -38.64177 -38.12275 -37.25531 -35.60049 -33.92470 -33.20111 -32.19863 -31.49899 -31.13559 -27.42966 -26.12367 -25.26016 -24.67977 -23.35679 -22.64138 -22.28963 -21.30372 -20.19770 -19.17591 -19.04170 -17.87596 -17.63471 -16.58327 -16.07283 -15.77288 -15.41278 -15.20723 -14.79149 -14.75655 -14.67457 -14.32101 -14.22364 -13.87387 -13.78686 -13.50173 -13.37897 -13.17681 -12.92598 -12.67166 -12.51921 -12.35283 -12.07554 -11.89646 -11.82862 -11.57690 -11.48334 -11.36763 -11.19658 -11.03736 -10.91072 -10.77268 -10.71283 -10.52444 -10.38908 -10.37937 -10.21050 -9.84116 -9.49968 -8.86711 -8.44410 -8.03049 -7.94527 -6.40802 -3.81596 2.38220 2.66912 3.18508 3.27004 3.32936 3.42516 3.92380 4.08362 4.11196 4.19599 4.33698 4.41160 4.51082 4.64367 4.70607 4.74901 4.79083 4.93263 4.96489 5.02004 5.02670 5.16914 5.19793 5.22370 5.26263 5.27512 5.31838 5.40741 5.48665 5.52653 5.55190 5.55385 5.62099 5.70564 5.74431 5.74743 5.82546 5.90183 5.95965 5.97795 6.00885 6.20716 6.28797 6.31816 6.38533 7.14426 7.23458 7.56016 7.67298 7.93982 8.07456 8.62439 9.18858 9.55582 10.07085 10.76961 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.001697 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.844819 B =16491.317078 C =16582.016038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 H 0.093 0.907 4 C 0.523 3.477 5 O -0.540 6.540 6 N -0.609 5.609 7 C 0.104 3.896 8 C -0.137 4.137 9 C -0.109 4.109 10 C -0.096 4.096 11 H 0.074 0.926 12 C 0.065 3.935 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.116 3.884 27 C -0.140 4.140 28 C -0.180 4.180 29 C -0.176 4.176 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.349 0.651 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.118 0.882 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.893 2.438 -23.061 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.111 0.889 4 C 0.311 3.689 5 O -0.416 6.416 6 N -0.342 5.342 7 C -0.019 4.019 8 C -0.175 4.175 9 C -0.146 4.146 10 C -0.116 4.116 11 H 0.092 0.908 12 C -0.065 4.065 13 N -0.298 5.298 14 C -0.082 4.082 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.007 4.007 27 C -0.158 4.158 28 C -0.216 4.216 29 C -0.213 4.213 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.168 0.832 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.136 0.864 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.113 0.887 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.635 2.848 -23.048 29.775 hybrid contribution 0.874 -0.874 0.612 1.379 sum -17.761 1.974 -22.435 28.683 Atomic orbital electron populations 1.21696 0.92198 1.03195 1.02473 1.20883 0.97635 0.99790 0.91877 0.88868 1.20514 0.77290 0.86971 0.84126 1.90677 1.48559 1.17424 1.84971 1.48068 1.68395 1.09888 1.07885 1.21872 0.98367 0.79859 1.01782 1.21962 0.98139 0.99572 0.97858 1.21491 1.02608 0.94695 0.95828 1.21471 0.97942 0.95986 0.96193 0.90804 1.21912 0.94517 0.95370 0.94718 1.60055 1.07390 1.57884 1.04503 1.21665 0.98189 0.96156 0.92185 1.19820 0.87018 0.86936 0.83559 1.90519 1.62345 1.33438 1.60480 1.41867 1.26463 1.34608 1.17153 1.19708 1.03569 1.17463 1.02166 0.87933 1.25262 0.99522 0.96757 0.96425 1.69613 1.41087 1.28736 1.14884 0.85854 0.80914 0.78629 0.78861 1.20399 1.20947 1.19448 1.21615 0.97141 0.97063 0.84855 1.22136 1.03613 1.00313 0.89786 1.23056 0.92613 1.01941 1.04039 1.22965 0.98121 1.03188 0.97026 0.91280 0.91709 0.92052 0.89859 0.91179 0.91517 0.90570 0.92049 0.89487 0.95326 0.90909 0.83227 0.89637 0.93911 0.77461 0.91891 0.89094 0.91363 0.86383 0.88812 0.88661 0.88666 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.92 37.16 0.33 -0.47 16 2 C -0.08 -0.60 2.05 -91.78 -0.19 -0.79 16 3 H 0.09 0.56 5.96 -51.93 -0.31 0.25 16 4 C 0.52 5.62 6.83 -10.99 -0.08 5.54 16 5 O -0.54 -7.88 15.16 5.56 0.08 -7.80 16 6 N -0.61 -5.70 2.97 -172.77 -0.51 -6.21 16 7 C 0.10 0.70 5.96 -3.71 -0.02 0.68 16 8 C -0.14 -1.08 6.08 -26.61 -0.16 -1.24 16 9 C -0.11 -1.10 5.07 -26.70 -0.14 -1.23 16 10 C -0.10 -1.04 2.48 -90.50 -0.22 -1.26 16 11 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 12 C 0.07 0.79 5.08 -3.82 -0.02 0.77 16 13 N -0.67 -10.60 5.56 -115.06 -0.64 -11.24 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 15 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 16 O -0.58 -15.91 15.78 5.54 0.09 -15.82 16 17 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 22 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.12 1.17 5.73 -3.71 -0.02 1.15 16 27 C -0.14 -1.14 4.94 -90.62 -0.45 -1.58 16 28 C -0.18 -1.27 10.18 -26.69 -0.27 -1.55 16 29 C -0.18 -1.06 9.80 -26.69 -0.26 -1.32 16 30 H 0.07 0.30 7.47 -51.93 -0.39 -0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.32 7.81 -51.93 -0.41 -0.08 16 33 H 0.08 0.42 5.43 -51.93 -0.28 0.14 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 1.10 7.72 -51.93 -0.40 0.70 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.09 1.07 7.00 -51.93 -0.36 0.71 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.12 1.20 7.32 -51.93 -0.38 0.82 16 49 H 0.09 0.60 8.05 -51.92 -0.42 0.19 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.09 0.46 7.66 -51.93 -0.40 0.06 16 LS Contribution 413.03 15.07 6.22 6.22 Total: -1.00 -32.96 413.03 -9.97 -42.94 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -9.01 Total: 12.32 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.85 Total: 1.87 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.49 Total: -55.88 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.17 Total: -23.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.96 -9.97 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752793529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.801 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds