Wall clock time and date at job start Tue Mar 31 2020 21:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47193 * 2 1 4 4 N 1.46907 * 109.46849 * 240.00417 * 2 1 3 5 5 C 1.46895 * 110.99841 * 85.00276 * 4 2 1 6 6 C 1.50706 * 109.47045 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99814 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00041 * 179.97438 * 6 5 4 9 9 C 1.37096 * 120.00106 * 180.02562 * 8 6 5 10 10 H 1.08003 * 119.99955 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00311 * 179.97438 * 9 8 6 12 12 N 1.31414 * 120.00101 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99846 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47428 * 90.00123 * 13 11 9 15 15 H 1.48505 * 109.47142 * 209.99977 * 13 11 9 16 16 H 1.48504 * 109.47166 * 329.99917 * 13 11 9 17 17 C 1.53002 * 109.47424 * 120.00463 * 2 1 3 18 18 C 1.53043 * 109.45847 * 60.02684 * 17 2 1 19 19 C 1.53189 * 109.30963 * 178.60364 * 18 17 2 20 20 N 1.46927 * 108.76817 * 54.65479 * 19 18 17 21 21 C 1.34774 * 120.63309 * 126.40578 * 20 19 18 22 22 O 1.21277 * 120.00380 * 175.82760 * 21 20 19 23 23 C 1.50702 * 120.00033 * 355.82563 * 21 20 19 24 24 C 1.53001 * 115.54945 * 66.37065 * 23 21 20 25 25 C 1.52998 * 117.49879 * 280.66685 * 23 21 20 26 26 C 1.52995 * 117.50264 * 212.04292 * 23 21 20 27 27 C 1.46924 * 118.73620 * 306.38199 * 20 19 18 28 28 C 1.53044 * 109.45825 * 299.97375 * 17 2 1 29 29 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46786 * 299.99475 * 1 2 3 31 31 H 1.08995 * 109.47485 * 59.99606 * 1 2 3 32 32 H 1.00899 * 110.99735 * 208.95202 * 4 2 1 33 33 H 1.09010 * 109.46964 * 299.99540 * 5 4 2 34 34 H 1.08992 * 109.47576 * 59.99645 * 5 4 2 35 35 H 0.97000 * 120.00183 * 359.97438 * 8 6 5 36 36 H 0.96998 * 119.99767 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.46231 * 179.97438 * 17 2 1 38 38 H 1.09002 * 109.49797 * 298.56688 * 18 17 2 39 39 H 1.08998 * 109.49849 * 58.66303 * 18 17 2 40 40 H 1.09002 * 109.59875 * 294.86518 * 19 18 17 41 41 H 1.09007 * 109.58573 * 174.43531 * 19 18 17 42 42 H 1.09001 * 109.46997 * 54.65349 * 24 23 21 43 43 H 1.08999 * 109.47340 * 174.65396 * 24 23 21 44 44 H 1.09001 * 109.47182 * 294.65215 * 24 23 21 45 45 H 1.08995 * 117.50144 * 359.97438 * 25 23 21 46 46 H 1.09006 * 117.49902 * 145.01921 * 25 23 21 47 47 H 1.08998 * 117.50100 * 214.97839 * 26 23 21 48 48 H 1.09004 * 117.49839 * 359.97438 * 26 23 21 49 49 H 1.08993 * 109.58841 * 293.81758 * 27 20 19 50 50 H 1.09002 * 109.58381 * 173.39661 * 27 20 19 51 51 H 1.08998 * 109.49348 * 301.33196 * 28 17 2 52 52 H 1.08995 * 109.49813 * 61.43077 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5872 -0.5216 -3.5561 7 8 2.8675 -1.6985 -3.4704 8 7 2.7272 0.1205 -4.7328 9 6 3.1859 -0.5567 -5.8330 10 1 3.4355 -1.6047 -5.7567 11 6 3.3297 0.1051 -7.0462 12 7 3.7699 -0.5440 -8.1007 13 14 2.8973 1.9176 -7.1784 14 1 4.0977 2.7365 -6.8729 15 1 2.4320 2.2163 -8.5567 16 1 1.8182 2.2409 -6.2107 17 6 2.0401 -0.7213 1.2492 18 6 1.5304 -2.1644 1.2484 19 6 2.0715 -2.8934 2.4823 20 7 1.7087 -2.1261 3.6817 21 6 1.0561 -2.7159 4.7028 22 8 0.8291 -2.0926 5.7181 23 6 0.6085 -4.1499 4.5831 24 6 1.7305 -5.1870 4.5042 25 6 -0.6678 -4.4273 3.7863 26 6 -0.6756 -4.5523 5.3111 27 6 2.0713 -0.7038 3.7468 28 6 1.5303 0.0006 2.4987 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.9172 -1.1204 -1.0289 33 1 1.0869 0.6165 -2.5525 34 1 2.7587 1.0463 -2.1182 35 1 2.5026 1.0617 -4.8014 36 1 3.8706 -0.0818 -8.9475 37 1 3.1301 -0.7216 1.2487 38 1 0.4406 -2.1654 1.2739 39 1 1.8741 -2.6712 0.3468 40 1 3.1565 -2.9726 2.4136 41 1 1.6332 -3.8898 2.5395 42 1 2.3967 -5.0673 5.3586 43 1 1.3010 -6.1887 4.5160 44 1 2.2934 -5.0440 3.5818 45 1 -1.1840 -3.5727 3.3490 46 1 -0.7083 -5.3490 3.2055 47 1 -0.7211 -5.5561 5.7336 48 1 -1.1964 -3.7800 5.8771 49 1 3.1562 -0.6045 3.7812 50 1 1.6328 -0.2555 4.6383 51 1 1.8742 1.0349 2.4868 52 1 0.4407 -0.0209 2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753275064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:02 Heat of formation + Delta-G solvation = -45.028296 kcal Electronic energy + Delta-G solvation = -29898.422022 eV Core-core repulsion = 25898.537331 eV Total energy + Delta-G solvation = -3999.884691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89216 -39.09655 -38.25064 -37.04075 -36.01130 -34.02114 -32.91390 -31.67266 -31.41247 -29.74271 -29.02048 -26.91789 -25.92502 -24.23107 -23.50679 -23.05896 -22.80094 -21.25006 -19.75520 -19.39645 -18.70273 -18.32644 -17.14068 -16.42663 -16.24723 -15.74607 -15.48066 -15.31290 -14.91962 -14.79959 -14.63562 -14.52826 -14.05259 -13.88704 -13.49668 -13.39396 -13.31308 -12.91385 -12.82473 -12.69837 -12.62839 -12.39384 -12.20573 -12.10691 -12.07822 -11.91143 -11.85233 -11.60356 -11.18869 -11.11727 -10.91821 -10.78782 -10.66540 -10.60908 -10.46993 -10.31489 -9.98987 -9.88248 -9.58645 -8.90680 -8.58634 -8.21043 -8.14150 -6.32575 -3.83967 2.30186 2.64830 3.01328 3.05135 3.13697 3.33646 3.73136 4.02417 4.08888 4.09209 4.29118 4.43945 4.48621 4.49406 4.61073 4.68492 4.81625 4.90126 4.98167 5.04355 5.17976 5.20772 5.24825 5.26097 5.27920 5.30086 5.38037 5.40258 5.49186 5.52359 5.55375 5.57681 5.63766 5.66870 5.73412 5.74245 5.76195 5.79188 5.86387 5.92096 5.98919 6.07426 6.11455 6.31695 6.38428 7.12440 7.13259 7.56578 7.58981 7.91089 8.13139 8.58427 8.93584 9.41168 9.81469 10.80549 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.002068 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.862421 B =13533.917985 C =14090.690099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.088 3.912 3 H 0.041 0.959 4 N -0.662 5.662 5 C 0.048 3.952 6 C 0.451 3.549 7 O -0.565 6.565 8 N -0.591 5.591 9 C -0.304 4.304 10 H 0.119 0.881 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.276 1.276 16 H -0.269 1.269 17 C -0.087 4.087 18 C -0.126 4.126 19 C 0.099 3.901 20 N -0.603 5.603 21 C 0.553 3.447 22 O -0.544 6.544 23 C -0.162 4.162 24 C -0.116 4.116 25 C -0.157 4.157 26 C -0.145 4.145 27 C 0.112 3.888 28 C -0.128 4.128 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.349 0.651 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 -1.518 25.153 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 H 0.059 0.941 4 N -0.295 5.295 5 C -0.085 4.085 6 C 0.236 3.764 7 O -0.447 6.447 8 N -0.231 5.231 9 C -0.433 4.433 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.106 4.106 18 C -0.164 4.164 19 C -0.023 4.023 20 N -0.336 5.336 21 C 0.341 3.659 22 O -0.421 6.421 23 C -0.166 4.166 24 C -0.173 4.173 25 C -0.195 4.195 26 C -0.183 4.183 27 C -0.011 4.011 28 C -0.167 4.167 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.169 0.831 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.085 0.915 50 H 0.108 0.892 51 H 0.093 0.907 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.003 -2.233 25.335 26.380 hybrid contribution 0.539 2.127 -0.312 2.216 sum -6.464 -0.106 25.023 25.844 Atomic orbital electron populations 1.21897 0.94757 1.02539 1.00851 1.21531 0.96138 0.95453 0.89054 0.94084 1.60150 1.34668 1.31954 1.02712 1.21751 1.01204 0.94038 0.91490 1.19723 0.84422 0.88204 0.84017 1.90554 1.53823 1.15856 1.84438 1.42220 1.60144 1.11111 1.09619 1.19424 1.40080 0.98000 0.85816 0.86290 1.25044 0.97515 0.98412 0.95251 1.69621 1.45188 1.36518 1.00817 0.86672 0.78984 0.85152 0.78578 1.19680 1.20165 1.19495 1.21292 1.00060 0.95497 0.93728 1.21978 1.01644 0.95090 0.97720 1.22065 1.00295 0.95873 0.84068 1.48053 1.57058 1.10697 1.17816 1.19575 0.76786 0.87108 0.82457 1.90674 1.56574 1.65475 1.29417 1.21382 0.92060 0.93665 1.09449 1.21462 0.96424 0.96629 1.02802 1.23118 0.97725 1.03866 0.94741 1.23025 0.97397 1.03089 0.94769 1.21605 0.99878 0.80313 0.99272 1.22009 1.01769 0.99213 0.93684 0.91630 0.92807 0.92881 0.83051 0.89605 0.93912 0.79724 0.91620 0.91071 0.91025 0.88878 0.91304 0.88779 0.91762 0.91271 0.91034 0.88368 0.87576 0.87905 0.88010 0.91535 0.89162 0.90718 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.71 37.16 0.32 -1.15 16 2 C 0.09 0.93 2.44 -67.71 -0.17 0.77 16 3 H 0.04 0.43 7.80 -51.93 -0.40 0.02 16 4 N -0.66 -9.32 5.19 -107.99 -0.56 -9.88 16 5 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 6 C 0.45 9.96 7.82 -10.98 -0.09 9.88 16 7 O -0.56 -14.74 15.78 5.55 0.09 -14.65 16 8 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 9 C -0.30 -8.53 10.16 -14.94 -0.15 -8.68 16 10 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 11 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 12 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 13 Si 0.88 19.22 27.74 -169.99 -4.71 14.50 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 17 C -0.09 -0.76 1.84 -90.57 -0.17 -0.93 16 18 C -0.13 -1.12 4.82 -26.61 -0.13 -1.25 16 19 C 0.10 0.78 5.59 -3.71 -0.02 0.76 16 20 N -0.60 -5.58 2.97 -172.77 -0.51 -6.10 16 21 C 0.55 6.06 6.97 -10.99 -0.08 5.99 16 22 O -0.54 -7.90 16.15 5.56 0.09 -7.81 16 23 C -0.16 -1.35 1.37 -155.66 -0.21 -1.56 16 24 C -0.12 -0.75 9.30 37.16 0.35 -0.41 16 25 C -0.16 -1.10 9.57 -26.73 -0.26 -1.35 16 26 C -0.15 -1.11 9.74 -26.73 -0.26 -1.37 16 27 C 0.11 0.98 6.42 -3.71 -0.02 0.95 16 28 C -0.13 -1.02 4.97 -26.61 -0.13 -1.15 16 29 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 30 H 0.05 0.47 6.46 -51.93 -0.34 0.14 16 31 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 32 H 0.35 5.10 7.89 -39.29 -0.31 4.79 16 33 H 0.09 1.26 7.44 -51.92 -0.39 0.87 16 34 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 35 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.07 0.67 6.51 -51.93 -0.34 0.33 16 39 H 0.09 0.97 7.44 -51.93 -0.39 0.58 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.66 4.33 -51.93 -0.22 0.43 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 44 H 0.07 0.42 5.76 -51.93 -0.30 0.12 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.90 8.01 -51.93 -0.42 0.48 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.90 7.03 -51.93 -0.37 0.54 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.07 0.62 6.51 -51.93 -0.34 0.29 16 LS Contribution 400.62 15.07 6.04 6.04 Total: -1.00 -33.64 400.62 -8.53 -42.17 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -8.54 Total: 12.25 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.14 Total: 2.25 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.36 Total: -54.75 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.18 Total: -22.45 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.64 -8.53 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753275064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.858 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds