Wall clock time and date at job start Tue Mar 31 2020 21:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47028 * 2 1 4 4 N 1.46499 * 109.46623 * 240.00133 * 2 1 3 5 5 C 1.36934 * 120.00116 * 85.00507 * 4 2 1 6 6 H 1.08004 * 120.00228 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00199 * 179.97438 * 5 4 2 8 8 N 1.31616 * 119.99871 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47147 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47530 * 119.99770 * 9 7 5 12 12 H 1.48503 * 109.47195 * 240.00123 * 9 7 5 13 13 C 1.52994 * 109.47136 * 120.00304 * 2 1 3 14 14 C 1.53042 * 109.46339 * 60.06437 * 13 2 1 15 15 C 1.53187 * 109.31536 * 178.61418 * 14 13 2 16 16 N 1.46927 * 108.77807 * 54.63692 * 15 14 13 17 17 C 1.34773 * 120.63572 * 126.41212 * 16 15 14 18 18 O 1.21279 * 120.00466 * 175.40541 * 17 16 15 19 19 C 1.50705 * 119.99475 * 355.40656 * 17 16 15 20 20 H 1.09003 * 108.56645 * 33.38085 * 19 17 16 21 21 C 1.51781 * 108.61258 * 151.18383 * 19 17 16 22 22 C 1.52942 * 110.88063 * 188.10776 * 21 19 17 23 23 N 1.47190 * 108.69280 * 273.54882 * 22 21 19 24 24 C 1.33369 * 120.43447 * 71.95253 * 23 22 21 25 25 O 1.21278 * 119.89555 * 179.74441 * 24 23 22 26 26 C 1.51425 * 120.20795 * 359.72332 * 24 23 22 27 27 C 1.51794 * 108.61601 * 275.44499 * 19 17 16 28 28 C 1.46927 * 118.73463 * 306.39468 * 16 15 14 29 29 C 1.53039 * 109.46013 * 299.99605 * 13 2 1 30 30 H 1.09003 * 109.46732 * 299.99912 * 1 2 3 31 31 H 1.09001 * 109.47223 * 59.99664 * 1 2 3 32 32 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99880 * 264.99364 * 4 2 1 34 34 H 0.97008 * 120.00171 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46228 * 180.02562 * 13 2 1 36 36 H 1.08996 * 109.49805 * 298.56959 * 14 13 2 37 37 H 1.09001 * 109.49517 * 58.66238 * 14 13 2 38 38 H 1.09000 * 109.58767 * 294.85065 * 15 14 13 39 39 H 1.09005 * 109.70527 * 174.49659 * 15 14 13 40 40 H 1.08998 * 109.19594 * 308.47201 * 21 19 17 41 41 H 1.09001 * 109.19563 * 67.75676 * 21 19 17 42 42 H 1.09004 * 109.58828 * 153.78864 * 22 21 19 43 43 H 1.08999 * 109.73326 * 33.39683 * 22 21 19 44 44 H 0.97011 * 119.78673 * 251.97567 * 23 22 21 45 45 H 1.09003 * 109.62865 * 169.07897 * 26 24 23 46 46 H 1.08997 * 109.63853 * 48.48432 * 26 24 23 47 47 H 1.08998 * 109.22149 * 292.39557 * 27 19 17 48 48 H 1.08997 * 109.22024 * 51.78580 * 27 19 17 49 49 H 1.09006 * 109.58721 * 293.81555 * 28 16 15 50 50 H 1.09005 * 109.58480 * 173.39346 * 28 16 15 51 51 H 1.08997 * 109.50156 * 301.33936 * 29 13 2 52 52 H 1.08999 * 109.50047 * 61.43746 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.9260 -1.9385 -3.4498 9 14 2.7899 0.2701 -5.1183 10 1 2.3741 1.6820 -4.9214 11 1 4.2069 0.2281 -5.5608 12 1 1.9296 -0.3592 -6.1523 13 6 2.0400 -0.7213 1.2491 14 6 1.5311 -2.1646 1.2481 15 6 2.0720 -2.8935 2.4821 16 7 1.7086 -2.1265 3.6815 17 6 1.0560 -2.7166 4.7024 18 8 0.8353 -2.0959 5.7207 19 6 0.6005 -4.1478 4.5786 20 1 1.3234 -4.6906 3.9696 21 6 0.5740 -4.7692 5.9632 22 6 0.3131 -6.2739 5.8804 23 7 -1.1411 -6.4994 5.8473 24 6 -1.8474 -6.1941 4.7581 25 8 -3.0444 -6.3882 4.7398 26 6 -1.1597 -5.6053 3.5442 27 6 -0.7424 -4.1695 3.8714 28 6 2.0706 -0.7041 3.7468 29 6 1.5298 0.0003 2.4986 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.2500 -2.3956 -4.2417 35 1 3.1300 -0.7208 1.2492 36 1 0.4414 -2.1662 1.2731 37 1 1.8755 -2.6711 0.3464 38 1 3.1569 -2.9723 2.4136 39 1 1.6361 -3.8909 2.5403 40 1 1.5335 -4.5981 6.4512 41 1 -0.2150 -4.3006 6.5513 42 1 0.7399 -6.7674 6.7536 43 1 0.7664 -6.6768 4.9747 44 1 -1.5887 -6.8722 6.6230 45 1 -1.8476 -5.6032 2.6987 46 1 -0.2771 -6.1967 3.3005 47 1 -1.4948 -3.7152 4.5159 48 1 -0.6699 -3.5979 2.9462 49 1 3.1556 -0.6043 3.7815 50 1 1.6318 -0.2559 4.6383 51 1 1.8732 1.0347 2.4870 52 1 0.4401 -0.0216 2.5120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753277866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:23 Heat of formation + Delta-G solvation = -98.209373 kcal Electronic energy + Delta-G solvation = -30863.629231 eV Core-core repulsion = 26861.438435 eV Total energy + Delta-G solvation = -4002.190796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86332 -40.77915 -39.37644 -37.49408 -36.81584 -35.08035 -34.50820 -32.50476 -32.08099 -31.83632 -29.90671 -28.19026 -26.60552 -25.53222 -25.10531 -24.28489 -23.24055 -21.94264 -20.74044 -20.50863 -19.49993 -19.24403 -18.49588 -18.23695 -17.39570 -16.92760 -16.65896 -16.34801 -15.94667 -15.77398 -15.43844 -15.35151 -15.16061 -15.02352 -14.82773 -14.52483 -14.21360 -14.13174 -13.96790 -13.69770 -13.41591 -13.17395 -13.11790 -12.96514 -12.90742 -12.77933 -12.74591 -12.61258 -12.49484 -12.09985 -12.00357 -11.83400 -11.71427 -11.69201 -11.55322 -11.19640 -11.09498 -10.89106 -10.84678 -10.61051 -10.10583 -9.61099 -8.93139 -7.90270 -5.15705 1.48226 1.49605 1.53943 1.58084 1.69260 2.03110 2.41275 2.59041 3.36922 3.43554 3.47212 3.71701 3.78753 3.82860 3.83231 3.97549 4.10091 4.18758 4.21314 4.29603 4.37357 4.42211 4.44270 4.50833 4.51591 4.58512 4.67791 4.69615 4.73394 4.78046 4.85071 4.91603 4.95115 4.99235 5.01997 5.04760 5.12013 5.15502 5.16634 5.30289 5.32094 5.40538 5.45378 5.57128 5.64808 5.74820 5.90874 6.29145 6.34119 6.45537 7.17568 7.25670 7.40932 8.19314 8.43088 9.33175 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.002650 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.390351 B =10562.088264 C =11501.795954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.034 0.966 4 N -0.733 5.733 5 C -0.233 4.233 6 H 0.068 0.932 7 C -0.073 4.073 8 N -0.965 5.965 9 Si 0.962 3.038 10 H -0.271 1.271 11 H -0.294 1.294 12 H -0.296 1.296 13 C -0.080 4.080 14 C -0.124 4.124 15 C 0.108 3.892 16 N -0.604 5.604 17 C 0.515 3.485 18 O -0.585 6.585 19 C -0.103 4.103 20 H 0.129 0.871 21 C -0.122 4.122 22 C 0.110 3.890 23 N -0.715 5.715 24 C 0.511 3.489 25 O -0.610 6.610 26 C -0.130 4.130 27 C -0.097 4.097 28 C 0.114 3.886 29 C -0.118 4.118 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.403 0.597 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.048 0.952 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.570 -8.934 20.665 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.053 0.947 4 N -0.375 5.375 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.265 4.265 8 N -0.616 5.616 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.222 1.222 12 H -0.224 1.224 13 C -0.099 4.099 14 C -0.162 4.162 15 C -0.014 4.014 16 N -0.336 5.336 17 C 0.304 3.696 18 O -0.466 6.466 19 C -0.124 4.124 20 H 0.146 0.854 21 C -0.161 4.161 22 C -0.013 4.013 23 N -0.366 5.366 24 C 0.299 3.701 25 O -0.492 6.492 26 C -0.170 4.170 27 C -0.136 4.136 28 C -0.009 4.009 29 C -0.157 4.157 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.211 0.789 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.122 0.878 44 H 0.240 0.760 45 H 0.116 0.884 46 H 0.146 0.854 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.153 -8.450 20.898 22.572 hybrid contribution -0.132 0.442 -1.011 1.111 sum -1.285 -8.008 19.888 21.478 Atomic orbital electron populations 1.22380 0.98370 1.00911 0.99928 1.20406 0.92404 0.94716 0.86122 0.94744 1.42655 1.78299 1.10561 1.05968 1.19592 1.34303 0.93960 0.88648 0.91399 1.25384 1.03393 0.96880 1.00884 1.69776 1.52866 1.09861 1.29134 0.85229 0.76724 0.78147 0.80619 1.19602 1.22174 1.22368 1.21233 0.99783 0.95390 0.93520 1.21891 1.01143 0.95412 0.97767 1.22002 1.01249 0.95763 0.82415 1.48253 1.56469 1.10934 1.17936 1.21166 0.76369 0.89983 0.82056 1.90665 1.58050 1.67091 1.30769 1.21155 0.99084 0.92064 1.00115 0.85370 1.21650 1.03721 0.96034 0.94653 1.22028 0.78556 0.94350 1.06331 1.46042 1.10469 1.63728 1.16316 1.21064 0.86537 0.76356 0.86143 1.90736 1.17617 1.56670 1.84220 1.21976 1.03452 0.96273 0.95278 1.21071 0.95110 0.96194 1.01207 1.21574 1.00334 0.80525 0.98439 1.21912 1.01117 0.99667 0.92989 0.91726 0.95467 0.93261 0.78903 0.94161 0.91831 0.91424 0.91579 0.90122 0.86756 0.89298 0.92592 0.86140 0.87813 0.76048 0.88383 0.85381 0.93287 0.89468 0.90587 0.90245 0.90079 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 8.79 71.98 0.63 -4.58 16 2 C 0.17 6.17 2.72 44.99 0.12 6.30 16 3 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 4 N -0.73 -34.23 5.04 -322.95 -1.63 -35.86 16 5 C -0.23 -12.45 9.93 84.03 0.83 -11.61 16 6 H 0.07 3.58 7.83 -2.91 -0.02 3.55 16 7 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 8 N -0.97 -56.45 13.06 21.65 0.28 -56.16 16 9 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 13 C -0.08 -2.18 2.14 -10.77 -0.02 -2.21 16 14 C -0.12 -2.98 4.81 30.67 0.15 -2.83 16 15 C 0.11 1.81 6.12 86.36 0.53 2.34 16 16 N -0.60 -11.75 2.97 -818.89 -2.43 -14.19 16 17 C 0.51 10.66 6.62 87.66 0.58 11.24 16 18 O -0.59 -16.85 15.65 -3.03 -0.05 -16.90 16 19 C -0.10 -1.33 1.31 -12.34 -0.02 -1.35 16 20 H 0.13 0.85 5.85 -2.39 -0.01 0.83 16 21 C -0.12 -1.36 4.43 30.17 0.13 -1.22 16 22 C 0.11 0.59 6.45 86.23 0.56 1.15 16 23 N -0.72 -8.63 5.27 -462.69 -2.44 -11.07 16 24 C 0.51 9.84 7.06 88.11 0.62 10.47 16 25 O -0.61 -18.34 17.92 -3.02 -0.05 -18.39 16 26 C -0.13 -1.75 5.57 30.10 0.17 -1.59 16 27 C -0.10 -1.48 4.73 30.22 0.14 -1.34 16 28 C 0.11 2.39 6.42 86.36 0.55 2.94 16 29 C -0.12 -2.67 4.96 30.67 0.15 -2.52 16 30 H 0.06 1.79 6.46 -2.39 -0.02 1.77 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.62 6.46 -2.39 -0.02 1.61 16 33 H 0.38 18.40 6.04 -92.70 -0.56 17.84 16 34 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.64 6.51 -2.39 -0.02 1.63 16 37 H 0.07 1.92 6.46 -2.39 -0.02 1.90 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.24 5.21 -2.38 -0.01 1.23 16 40 H 0.09 0.91 8.09 -2.39 -0.02 0.90 16 41 H 0.06 0.95 7.95 -2.39 -0.02 0.94 16 42 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 43 H 0.10 0.15 6.72 -2.39 -0.02 0.14 16 44 H 0.40 4.42 8.91 -92.70 -0.83 3.59 16 45 H 0.10 1.50 8.13 -2.39 -0.02 1.48 16 46 H 0.13 0.82 6.77 -2.39 -0.02 0.81 16 47 H 0.05 1.01 7.86 -2.39 -0.02 0.99 16 48 H 0.09 1.34 7.86 -2.39 -0.02 1.32 16 49 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 50 H 0.08 1.85 7.03 -2.38 -0.02 1.83 16 51 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.07 1.55 6.51 -2.39 -0.02 1.53 16 Total: -1.00 -76.54 390.26 0.87 -75.67 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.44 Total: 28.02 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.60 Total: 1.61 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -6.22 Total: -117.28 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.10 Total: -35.29 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.54 0.87 -75.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753277866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.539 kcal (2) G-P(sol) polarization free energy of solvation -76.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds