Wall clock time and date at job start Tue Mar 31 2020 21:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46810 * 2 1 4 4 N 1.46507 * 109.47260 * 119.99204 * 2 1 3 5 5 C 1.36939 * 120.00193 * 275.00635 * 4 2 1 6 6 H 1.08004 * 119.99397 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00122 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99877 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47198 * 89.99730 * 9 7 5 11 11 H 1.48498 * 109.47010 * 210.00185 * 9 7 5 12 12 H 1.48505 * 109.47034 * 329.99907 * 9 7 5 13 13 C 1.52994 * 109.47151 * 239.99450 * 2 1 3 14 14 C 1.53041 * 109.46151 * 64.99904 * 13 2 1 15 15 C 1.53197 * 109.30996 * 178.61101 * 14 13 2 16 16 N 1.46924 * 108.77502 * 54.63682 * 15 14 13 17 17 C 1.34776 * 120.62840 * 126.36394 * 16 15 14 18 18 O 1.21281 * 120.00470 * 4.89085 * 17 16 15 19 19 C 1.50709 * 119.99649 * 184.89037 * 17 16 15 20 20 H 1.08999 * 108.44481 * 322.81738 * 19 17 16 21 21 C 1.51772 * 108.61693 * 80.69147 * 19 17 16 22 22 C 1.52947 * 110.88568 * 188.10988 * 21 19 17 23 23 N 1.47190 * 108.68487 * 273.54599 * 22 21 19 24 24 C 1.33366 * 120.43327 * 71.95614 * 23 22 21 25 25 O 1.21280 * 119.89658 * 179.74320 * 24 23 22 26 26 C 1.51426 * 120.21296 * 359.71302 * 24 23 22 27 27 C 1.51792 * 108.61248 * 204.94840 * 19 17 16 28 28 C 1.46925 * 118.74211 * 306.64189 * 16 15 14 29 29 C 1.52763 * 109.00910 * 53.30431 * 28 16 15 30 30 H 1.08991 * 109.47216 * 60.00959 * 1 2 3 31 31 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47425 * 300.00422 * 1 2 3 33 33 H 0.96993 * 119.99843 * 94.99629 * 4 2 1 34 34 H 0.96995 * 120.00099 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.44826 * 184.96388 * 13 2 1 36 36 H 1.08999 * 109.49207 * 58.66325 * 14 13 2 37 37 H 1.08994 * 109.52104 * 298.58219 * 14 13 2 38 38 H 1.08997 * 109.58593 * 294.84749 * 15 14 13 39 39 H 1.08998 * 109.58303 * 174.42276 * 15 14 13 40 40 H 1.09003 * 109.19772 * 308.47497 * 21 19 17 41 41 H 1.09004 * 109.19992 * 67.75340 * 21 19 17 42 42 H 1.09000 * 109.59044 * 153.78991 * 22 21 19 43 43 H 1.08994 * 109.72797 * 33.38721 * 22 21 19 44 44 H 0.97004 * 119.78375 * 251.96824 * 23 22 21 45 45 H 1.09009 * 109.63396 * 169.08583 * 26 24 23 46 46 H 1.09000 * 109.63341 * 48.48627 * 26 24 23 47 47 H 1.08999 * 109.22554 * 292.39460 * 27 19 17 48 48 H 1.09004 * 109.22445 * 51.78536 * 27 19 17 49 49 H 1.08997 * 109.59457 * 173.14399 * 28 16 15 50 50 H 1.09005 * 109.58112 * 293.57314 * 28 16 15 51 51 H 1.08992 * 109.56692 * 185.55722 * 29 28 16 52 52 H 1.09004 * 109.35717 * 65.50156 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1491 -0.0072 2.3759 6 1 1.8925 1.0408 2.4241 7 6 2.6113 -0.6616 3.5094 8 7 2.9235 -1.9388 3.4507 9 14 2.7902 0.2707 5.1183 10 1 1.5224 0.1806 5.8862 11 1 3.8944 -0.3230 5.9142 12 1 3.0961 1.6956 4.8333 13 6 2.0400 -0.7213 -1.2491 14 6 1.6350 0.0691 -2.4955 15 6 2.1770 -0.6377 -3.7419 16 7 1.7131 -2.0318 -3.7343 17 6 1.0633 -2.5450 -4.7977 18 8 0.9342 -1.8841 -5.8064 19 6 0.4970 -3.9401 -4.7333 20 1 1.1862 -4.5662 -4.1666 21 6 -0.8297 -3.8911 -3.9978 22 6 -1.3549 -5.3016 -3.7260 23 7 -2.1216 -5.7534 -4.8984 24 6 -1.4964 -6.0735 -6.0321 25 8 -2.1374 -6.4490 -6.9907 26 6 0.0113 -5.9689 -6.1265 27 6 0.3949 -4.4872 -6.1455 28 6 1.9657 -2.8539 -2.5431 29 6 1.4310 -2.1240 -1.3123 30 1 -0.3633 0.5136 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6316 1.1529 34 1 3.2468 -2.3960 4.2427 35 1 3.1264 -0.7988 -1.2054 36 1 2.0497 1.0755 -2.4386 37 1 0.5480 0.1262 -2.5532 38 1 3.2667 -0.6151 -3.7299 39 1 1.8088 -0.1349 -4.6361 40 1 -0.6950 -3.3700 -3.0500 41 1 -1.5557 -3.3491 -4.6039 42 1 -2.0020 -5.2880 -2.8489 43 1 -0.5185 -5.9787 -3.5530 44 1 -3.0881 -5.8185 -4.8462 45 1 0.3550 -6.4480 -7.0434 46 1 0.4669 -6.4541 -5.2633 47 1 -0.3630 -3.9273 -6.6934 48 1 1.3568 -4.3727 -6.6452 49 1 1.4581 -3.8130 -2.6466 50 1 3.0378 -3.0157 -2.4315 51 1 1.7005 -2.6784 -0.4134 52 1 0.3459 -2.0467 -1.3810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753277869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:38 Heat of formation + Delta-G solvation = -75.820515 kcal Electronic energy + Delta-G solvation = -30825.974685 eV Core-core repulsion = 26824.754743 eV Total energy + Delta-G solvation = -4001.219942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08626 -39.95542 -38.25702 -36.74096 -35.49392 -34.21802 -33.01179 -31.83187 -30.92124 -30.61312 -28.34431 -27.49870 -25.39218 -24.52422 -23.84658 -23.30202 -22.16843 -21.05676 -20.10109 -19.43993 -18.55203 -17.75588 -17.57670 -17.22976 -16.62995 -16.05853 -15.47695 -15.11052 -14.95915 -14.55622 -14.41239 -14.24896 -14.19330 -13.99984 -13.82917 -13.57429 -13.20407 -12.99997 -12.85985 -12.68473 -12.61553 -12.33781 -12.19033 -11.93013 -11.78583 -11.67650 -11.44535 -11.20737 -11.14612 -11.08428 -10.89583 -10.66590 -10.37946 -10.32246 -10.18278 -10.07287 -9.90524 -9.72214 -9.60472 -9.41526 -8.95987 -8.67629 -7.00422 -5.82234 -3.09892 2.34746 2.48430 2.86252 2.97383 3.39203 3.45206 3.46105 4.07882 4.11445 4.28028 4.34272 4.53901 4.64958 4.74971 4.83898 4.90375 4.96494 5.00463 5.03204 5.07637 5.09575 5.15442 5.30871 5.33518 5.42445 5.47238 5.50393 5.58098 5.60943 5.71684 5.75248 5.80383 5.87078 5.90900 5.93185 6.05369 6.13466 6.20882 6.24096 6.39446 6.46279 6.49724 6.60552 6.68772 6.87069 6.91720 7.08862 7.30955 7.66080 7.93610 8.04507 8.37464 9.48730 10.06573 10.41092 11.40661 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.002533 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.739087 B =11052.798564 C =11895.383277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.605 5.605 17 C 0.517 3.483 18 O -0.545 6.545 19 C -0.108 4.108 20 H 0.096 0.904 21 C -0.136 4.136 22 C 0.110 3.890 23 N -0.724 5.724 24 C 0.519 3.481 25 O -0.554 6.554 26 C -0.139 4.139 27 C -0.095 4.095 28 C 0.101 3.899 29 C -0.129 4.129 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.401 0.599 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -6.704 -15.736 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.338 5.338 17 C 0.305 3.695 18 O -0.423 6.423 19 C -0.129 4.129 20 H 0.114 0.886 21 C -0.174 4.174 22 C -0.014 4.014 23 N -0.377 5.377 24 C 0.305 3.695 25 O -0.432 6.432 26 C -0.179 4.179 27 C -0.133 4.133 28 C -0.021 4.021 29 C -0.167 4.167 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.237 0.763 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.089 0.911 51 H 0.104 0.896 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.927 -6.399 -16.632 18.488 hybrid contribution -0.120 0.252 1.359 1.387 sum -5.046 -6.147 -15.273 17.219 Atomic orbital electron populations 1.22526 0.99606 1.00761 0.99721 1.20195 0.91715 0.95232 0.86064 0.93668 1.42448 1.78166 1.10667 1.05313 1.19239 1.36213 0.93847 0.87392 0.91320 1.24702 1.02301 0.95989 0.97985 1.69638 1.51205 1.08643 1.28842 0.86228 0.77286 0.78848 0.84064 1.21805 1.21816 1.20829 1.21395 1.00472 0.94442 0.94631 1.21998 1.01596 0.99173 0.93846 1.21637 0.98895 0.80991 0.99515 1.48169 1.56619 1.13012 1.16027 1.20576 0.77600 0.88635 0.82679 1.90687 1.58882 1.61941 1.30779 1.21063 0.98539 0.94725 0.98596 0.88591 1.21821 0.95868 0.97996 1.01751 1.21777 0.97150 0.94567 0.87924 1.45984 1.10876 1.67894 1.12922 1.20609 0.91099 0.75656 0.82095 1.90758 1.68427 1.47215 1.36826 1.22016 0.92036 0.98588 1.05228 1.21052 1.03884 0.93167 0.95236 1.21873 1.01438 0.94040 0.84747 1.21938 1.00870 0.96786 0.97084 0.94529 0.93305 0.93173 0.78288 0.93571 0.90944 0.90776 0.91371 0.91585 0.89429 0.89318 0.90244 0.88644 0.90043 0.76320 0.88062 0.89017 0.90390 0.90006 0.89825 0.91056 0.89588 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.76 37.16 0.33 -2.39 16 2 C 0.18 3.15 2.67 -67.93 -0.18 2.97 16 3 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 4 N -0.72 -16.55 5.06 -53.42 -0.27 -16.82 16 5 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 6 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 9 Si 0.90 21.67 29.55 -169.99 -5.02 16.64 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C -0.09 -1.24 2.08 -90.58 -0.19 -1.43 16 14 C -0.13 -1.50 5.08 -26.61 -0.14 -1.64 16 15 C 0.11 1.26 6.42 -3.71 -0.02 1.23 16 16 N -0.61 -6.43 2.98 -173.03 -0.52 -6.95 16 17 C 0.52 5.83 6.66 -10.98 -0.07 5.75 16 18 O -0.55 -8.17 15.58 5.56 0.09 -8.08 16 19 C -0.11 -0.84 1.29 -93.00 -0.12 -0.96 16 20 H 0.10 0.55 6.08 -51.93 -0.32 0.24 16 21 C -0.14 -0.92 4.69 -27.38 -0.13 -1.05 16 22 C 0.11 0.54 6.45 -3.69 -0.02 0.52 16 23 N -0.72 -5.15 5.27 -59.93 -0.32 -5.46 16 24 C 0.52 5.12 7.06 -11.26 -0.08 5.04 16 25 O -0.55 -7.97 17.92 5.56 0.10 -7.87 16 26 C -0.14 -1.01 5.57 -27.49 -0.15 -1.16 16 27 C -0.10 -0.80 4.31 -27.31 -0.12 -0.92 16 28 C 0.10 0.95 5.76 -3.93 -0.02 0.93 16 29 C -0.13 -1.54 4.70 -26.83 -0.13 -1.67 16 30 H 0.04 0.51 6.60 -51.93 -0.34 0.17 16 31 H 0.05 0.78 6.38 -51.93 -0.33 0.45 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.38 9.12 6.35 -40.82 -0.26 8.86 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.83 6.64 -51.93 -0.34 0.48 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.06 7.04 -51.93 -0.37 0.70 16 40 H 0.09 0.60 7.22 -51.93 -0.37 0.22 16 41 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.30 6.73 -51.93 -0.35 -0.04 16 44 H 0.40 2.57 8.91 -40.82 -0.36 2.21 16 45 H 0.10 0.73 8.13 -51.92 -0.42 0.31 16 46 H 0.09 0.45 6.77 -51.93 -0.35 0.10 16 47 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 48 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 49 H 0.08 0.58 5.04 -51.93 -0.26 0.31 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.09 1.20 6.74 -51.93 -0.35 0.85 16 52 H 0.07 0.81 6.32 -51.93 -0.33 0.48 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -33.77 389.60 -9.14 -42.91 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.50 Total: 7.44 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.29 Total: -1.59 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.38 Total: -55.32 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.19 Total: -15.95 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.77 -9.14 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753277869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.912 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds