Wall clock time and date at job start Tue Mar 31 2020 21:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46810 * 2 1 4 4 N 1.46507 * 109.47260 * 119.99204 * 2 1 3 5 5 C 1.36939 * 120.00193 * 275.00635 * 4 2 1 6 6 H 1.08004 * 119.99397 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00122 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99877 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99911 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47198 * 89.99730 * 9 7 5 11 11 H 1.48498 * 109.47010 * 210.00185 * 9 7 5 12 12 H 1.48505 * 109.47034 * 329.99907 * 9 7 5 13 13 C 1.52994 * 109.47151 * 239.99450 * 2 1 3 14 14 C 1.53041 * 109.46151 * 64.99904 * 13 2 1 15 15 C 1.53197 * 109.30996 * 178.61101 * 14 13 2 16 16 N 1.46924 * 108.77502 * 54.63682 * 15 14 13 17 17 C 1.34776 * 120.62840 * 126.36394 * 16 15 14 18 18 O 1.21281 * 120.00470 * 4.89085 * 17 16 15 19 19 C 1.50709 * 119.99649 * 184.89037 * 17 16 15 20 20 H 1.08999 * 108.44481 * 322.81738 * 19 17 16 21 21 C 1.51772 * 108.61693 * 80.69147 * 19 17 16 22 22 C 1.52947 * 110.88568 * 188.10988 * 21 19 17 23 23 N 1.47190 * 108.68487 * 273.54599 * 22 21 19 24 24 C 1.33366 * 120.43327 * 71.95614 * 23 22 21 25 25 O 1.21280 * 119.89658 * 179.74320 * 24 23 22 26 26 C 1.51426 * 120.21296 * 359.71302 * 24 23 22 27 27 C 1.51792 * 108.61248 * 204.94840 * 19 17 16 28 28 C 1.46925 * 118.74211 * 306.64189 * 16 15 14 29 29 C 1.52763 * 109.00910 * 53.30431 * 28 16 15 30 30 H 1.08991 * 109.47216 * 60.00959 * 1 2 3 31 31 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47425 * 300.00422 * 1 2 3 33 33 H 0.96993 * 119.99843 * 94.99629 * 4 2 1 34 34 H 0.96995 * 120.00099 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.44826 * 184.96388 * 13 2 1 36 36 H 1.08999 * 109.49207 * 58.66325 * 14 13 2 37 37 H 1.08994 * 109.52104 * 298.58219 * 14 13 2 38 38 H 1.08997 * 109.58593 * 294.84749 * 15 14 13 39 39 H 1.08998 * 109.58303 * 174.42276 * 15 14 13 40 40 H 1.09003 * 109.19772 * 308.47497 * 21 19 17 41 41 H 1.09004 * 109.19992 * 67.75340 * 21 19 17 42 42 H 1.09000 * 109.59044 * 153.78991 * 22 21 19 43 43 H 1.08994 * 109.72797 * 33.38721 * 22 21 19 44 44 H 0.97004 * 119.78375 * 251.96824 * 23 22 21 45 45 H 1.09009 * 109.63396 * 169.08583 * 26 24 23 46 46 H 1.09000 * 109.63341 * 48.48627 * 26 24 23 47 47 H 1.08999 * 109.22554 * 292.39460 * 27 19 17 48 48 H 1.09004 * 109.22445 * 51.78536 * 27 19 17 49 49 H 1.08997 * 109.59457 * 173.14399 * 28 16 15 50 50 H 1.09005 * 109.58112 * 293.57314 * 28 16 15 51 51 H 1.08992 * 109.56692 * 185.55722 * 29 28 16 52 52 H 1.09004 * 109.35717 * 65.50156 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1491 -0.0072 2.3759 6 1 1.8925 1.0408 2.4241 7 6 2.6113 -0.6616 3.5094 8 7 2.9235 -1.9388 3.4507 9 14 2.7902 0.2707 5.1183 10 1 1.5224 0.1806 5.8862 11 1 3.8944 -0.3230 5.9142 12 1 3.0961 1.6956 4.8333 13 6 2.0400 -0.7213 -1.2491 14 6 1.6350 0.0691 -2.4955 15 6 2.1770 -0.6377 -3.7419 16 7 1.7131 -2.0318 -3.7343 17 6 1.0633 -2.5450 -4.7977 18 8 0.9342 -1.8841 -5.8064 19 6 0.4970 -3.9401 -4.7333 20 1 1.1862 -4.5662 -4.1666 21 6 -0.8297 -3.8911 -3.9978 22 6 -1.3549 -5.3016 -3.7260 23 7 -2.1216 -5.7534 -4.8984 24 6 -1.4964 -6.0735 -6.0321 25 8 -2.1374 -6.4490 -6.9907 26 6 0.0113 -5.9689 -6.1265 27 6 0.3949 -4.4872 -6.1455 28 6 1.9657 -2.8539 -2.5431 29 6 1.4310 -2.1240 -1.3123 30 1 -0.3633 0.5136 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6316 1.1529 34 1 3.2468 -2.3960 4.2427 35 1 3.1264 -0.7988 -1.2054 36 1 2.0497 1.0755 -2.4386 37 1 0.5480 0.1262 -2.5532 38 1 3.2667 -0.6151 -3.7299 39 1 1.8088 -0.1349 -4.6361 40 1 -0.6950 -3.3700 -3.0500 41 1 -1.5557 -3.3491 -4.6039 42 1 -2.0020 -5.2880 -2.8489 43 1 -0.5185 -5.9787 -3.5530 44 1 -3.0881 -5.8185 -4.8462 45 1 0.3550 -6.4480 -7.0434 46 1 0.4669 -6.4541 -5.2633 47 1 -0.3630 -3.9273 -6.6934 48 1 1.3568 -4.3727 -6.6452 49 1 1.4581 -3.8130 -2.6466 50 1 3.0378 -3.0157 -2.4315 51 1 1.7005 -2.6784 -0.4134 52 1 0.3459 -2.0467 -1.3810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753277869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:37 Heat of formation + Delta-G solvation = -99.247943 kcal Electronic energy + Delta-G solvation = -30826.990574 eV Core-core repulsion = 26824.754743 eV Total energy + Delta-G solvation = -4002.235832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.86879 -40.77616 -39.35595 -37.51637 -36.82877 -34.90950 -34.57620 -32.77389 -32.00301 -31.72095 -29.85003 -28.18884 -26.59905 -25.61087 -25.02692 -24.27167 -23.16524 -21.96605 -20.81933 -20.40379 -19.52664 -19.21512 -18.48510 -18.23647 -17.39749 -16.93041 -16.66149 -16.31237 -15.90209 -15.81919 -15.44842 -15.31476 -15.11887 -14.97801 -14.83867 -14.61526 -14.21528 -14.10131 -13.90896 -13.65016 -13.47280 -13.20230 -13.14063 -12.94559 -12.86195 -12.77608 -12.73231 -12.57535 -12.39424 -12.13537 -11.98528 -11.85563 -11.73434 -11.66228 -11.54179 -11.20521 -11.07835 -10.86896 -10.83796 -10.66211 -10.08355 -9.60731 -8.91933 -7.89438 -5.14650 1.49527 1.50173 1.57408 1.57739 1.67526 2.03077 2.41424 2.59751 3.37480 3.44400 3.49101 3.68542 3.79941 3.84339 3.84779 3.99051 4.12870 4.20287 4.22443 4.30293 4.38621 4.43545 4.48206 4.49660 4.50975 4.60274 4.66126 4.70633 4.75202 4.81147 4.86209 4.92753 4.95108 5.00148 5.02238 5.06611 5.14499 5.18220 5.21544 5.24537 5.32024 5.42599 5.47383 5.58022 5.66414 5.76917 5.89967 6.29814 6.34917 6.46370 7.18344 7.25688 7.41837 8.20493 8.44190 9.33768 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017924 B = 0.002533 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.739087 B =11052.798564 C =11895.383277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.172 3.828 3 H 0.031 0.969 4 N -0.732 5.732 5 C -0.233 4.233 6 H 0.068 0.932 7 C -0.072 4.072 8 N -0.965 5.965 9 Si 0.961 3.039 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.275 1.275 13 C -0.081 4.081 14 C -0.117 4.117 15 C 0.113 3.887 16 N -0.603 5.603 17 C 0.514 3.486 18 O -0.588 6.588 19 C -0.102 4.102 20 H 0.130 0.870 21 C -0.132 4.132 22 C 0.110 3.890 23 N -0.716 5.716 24 C 0.511 3.489 25 O -0.610 6.610 26 C -0.129 4.129 27 C -0.089 4.089 28 C 0.106 3.894 29 C -0.123 4.123 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.025 0.975 33 H 0.377 0.623 34 H 0.249 0.751 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.403 0.597 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.046 0.954 48 H 0.080 0.920 49 H 0.118 0.882 50 H 0.076 0.924 51 H 0.068 0.932 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -7.474 -15.308 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.064 3.936 3 H 0.050 0.950 4 N -0.374 5.374 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.265 4.265 8 N -0.616 5.616 9 Si 0.792 3.208 10 H -0.218 1.218 11 H -0.224 1.224 12 H -0.200 1.200 13 C -0.100 4.100 14 C -0.155 4.155 15 C -0.009 4.009 16 N -0.335 5.335 17 C 0.304 3.696 18 O -0.469 6.469 19 C -0.123 4.123 20 H 0.147 0.853 21 C -0.171 4.171 22 C -0.013 4.013 23 N -0.366 5.366 24 C 0.299 3.701 25 O -0.493 6.493 26 C -0.169 4.169 27 C -0.127 4.127 28 C -0.015 4.015 29 C -0.161 4.161 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.210 0.790 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.239 0.761 45 H 0.118 0.882 46 H 0.145 0.855 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.136 0.864 50 H 0.094 0.906 51 H 0.086 0.914 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.883 -7.128 -16.179 18.342 hybrid contribution -0.155 0.607 1.197 1.351 sum -5.038 -6.521 -14.982 17.099 Atomic orbital electron populations 1.22367 0.98080 1.01195 0.99861 1.20412 0.92619 0.94580 0.86022 0.95045 1.42605 1.78338 1.10509 1.05928 1.19550 1.34419 0.93939 0.88643 0.91448 1.25366 1.03396 0.96865 1.00829 1.69761 1.52867 1.09811 1.29161 0.85315 0.76774 0.78051 0.80691 1.21783 1.22366 1.20008 1.21241 0.99678 0.95659 0.93448 1.21887 1.01541 0.99151 0.92946 1.21555 0.99249 0.81548 0.98561 1.48228 1.56141 1.12806 1.16312 1.21193 0.76838 0.89656 0.81936 1.90676 1.60407 1.63344 1.32448 1.21132 0.99625 0.92802 0.98732 0.85265 1.21805 0.94706 0.99156 1.01390 1.22019 0.98267 0.93616 0.87430 1.46052 1.11329 1.66302 1.12916 1.21105 0.92149 0.74904 0.81938 1.90730 1.69671 1.50030 1.38864 1.21989 0.90256 0.97822 1.06844 1.20947 1.02781 0.93573 0.95401 1.21940 1.02117 0.94720 0.82770 1.21844 1.01149 0.95428 0.97671 0.91826 0.92701 0.95541 0.78978 0.94162 0.92205 0.90408 0.91335 0.90936 0.90383 0.88555 0.92391 0.86343 0.87529 0.76090 0.88207 0.85533 0.93477 0.90106 0.86399 0.90574 0.91379 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 8.76 71.98 0.63 -4.22 16 2 C 0.17 5.95 2.67 44.99 0.12 6.07 16 3 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 4 N -0.73 -33.31 5.06 -322.94 -1.63 -34.94 16 5 C -0.23 -12.25 9.93 84.03 0.83 -11.41 16 6 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 8 N -0.96 -55.57 13.06 21.65 0.28 -55.29 16 9 Si 0.96 44.55 29.55 68.60 2.03 46.58 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 C -0.08 -2.12 2.08 -10.77 -0.02 -2.14 16 14 C -0.12 -2.54 5.08 30.67 0.16 -2.38 16 15 C 0.11 2.37 6.42 86.36 0.55 2.92 16 16 N -0.60 -11.32 2.98 -819.72 -2.44 -13.76 16 17 C 0.51 10.57 6.66 87.66 0.58 11.16 16 18 O -0.59 -17.35 15.58 -3.03 -0.05 -17.39 16 19 C -0.10 -1.28 1.29 -12.34 -0.02 -1.30 16 20 H 0.13 0.79 6.08 -2.39 -0.01 0.78 16 21 C -0.13 -1.38 4.69 30.17 0.14 -1.24 16 22 C 0.11 0.65 6.45 86.23 0.56 1.21 16 23 N -0.72 -8.71 5.27 -462.69 -2.44 -11.14 16 24 C 0.51 9.53 7.06 88.11 0.62 10.15 16 25 O -0.61 -17.83 17.92 -3.03 -0.05 -17.88 16 26 C -0.13 -1.59 5.57 30.10 0.17 -1.42 16 27 C -0.09 -1.35 4.31 30.22 0.13 -1.22 16 28 C 0.11 1.63 5.76 86.22 0.50 2.13 16 29 C -0.12 -2.65 4.70 30.53 0.14 -2.50 16 30 H 0.06 1.63 6.60 -2.39 -0.02 1.62 16 31 H 0.05 1.64 6.38 -2.39 -0.02 1.62 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.38 17.93 6.35 -92.71 -0.59 17.34 16 34 H 0.25 14.06 8.31 -92.71 -0.77 13.28 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.50 6.64 -2.39 -0.02 1.49 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.83 7.04 -2.39 -0.02 1.81 16 40 H 0.10 0.91 7.22 -2.39 -0.02 0.90 16 41 H 0.06 0.89 8.05 -2.39 -0.02 0.87 16 42 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.11 0.19 6.73 -2.39 -0.02 0.17 16 44 H 0.40 4.60 8.91 -92.71 -0.83 3.77 16 45 H 0.10 1.29 8.13 -2.38 -0.02 1.27 16 46 H 0.13 0.67 6.77 -2.39 -0.02 0.65 16 47 H 0.05 1.02 7.77 -2.39 -0.02 1.00 16 48 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 49 H 0.12 1.02 5.04 -2.39 -0.01 1.00 16 50 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.07 1.78 6.74 -2.39 -0.02 1.76 16 52 H 0.07 1.53 6.32 -2.38 -0.02 1.51 16 Total: -1.00 -75.84 389.60 0.79 -75.05 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.47 Total: 26.46 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.57 Total: 2.32 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -6.23 Total: -115.13 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.10 Total: -35.28 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -75.84 0.79 -75.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753277869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.199 kcal (2) G-P(sol) polarization free energy of solvation -75.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds