Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46996 * 2 1 4 4 C 1.50694 * 109.46958 * 240.00128 * 2 1 3 5 5 O 1.21282 * 119.99795 * 239.99453 * 4 2 1 6 6 N 1.34781 * 120.00240 * 60.00006 * 4 2 1 7 7 C 1.46496 * 120.00064 * 174.85912 * 6 4 2 8 8 C 1.53005 * 110.43621 * 300.44512 * 7 6 4 9 9 N 1.46903 * 109.46857 * 305.38452 * 8 7 6 10 10 C 1.46899 * 110.99773 * 175.75264 * 9 8 7 11 11 C 1.50707 * 109.46877 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99800 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99589 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99667 * 180.02562 * 13 11 10 15 15 H 1.07994 * 119.99969 * 0.02562 * 14 13 11 16 16 C 1.38945 * 120.00021 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00114 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00138 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46743 * 60.00311 * 18 16 14 20 20 H 1.48497 * 109.46978 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47281 * 300.00606 * 18 16 14 22 22 C 1.54891 * 110.48847 * 177.75932 * 7 6 4 23 23 C 1.54889 * 102.74773 * 279.26810 * 22 7 6 24 24 C 1.54275 * 104.19304 * 322.05172 * 23 22 7 25 25 C 1.53870 * 106.59636 * 23.61409 * 24 23 22 26 26 C 1.53000 * 109.47006 * 119.99946 * 2 1 3 27 27 C 1.53003 * 117.49783 * 248.74358 * 26 2 1 28 28 C 1.53005 * 117.49623 * 180.08955 * 26 2 1 29 29 H 1.09002 * 109.47145 * 59.99754 * 1 2 3 30 30 H 1.08997 * 109.47108 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47065 * 299.99899 * 1 2 3 32 32 H 0.96998 * 119.99788 * 354.58530 * 6 4 2 33 33 H 1.08995 * 109.46984 * 65.38313 * 8 7 6 34 34 H 1.08999 * 109.47081 * 185.38753 * 8 7 6 35 35 H 1.00902 * 110.99608 * 51.80098 * 9 8 7 36 36 H 1.08994 * 109.47381 * 300.00283 * 10 9 8 37 37 H 1.08998 * 109.47040 * 60.00321 * 10 9 8 38 38 H 0.97000 * 120.00510 * 0.02562 * 13 11 10 39 39 H 0.97000 * 119.99954 * 179.97438 * 17 16 14 40 40 H 1.09002 * 110.75421 * 37.58073 * 22 7 6 41 41 H 1.08998 * 110.75720 * 160.94824 * 22 7 6 42 42 H 1.08998 * 110.48581 * 203.38108 * 23 22 7 43 43 H 1.08993 * 110.49304 * 80.73247 * 23 22 7 44 44 H 1.08996 * 110.03409 * 264.32909 * 24 23 22 45 45 H 1.08999 * 110.02663 * 142.89903 * 24 23 22 46 46 H 1.08994 * 110.03281 * 240.71039 * 25 24 23 47 47 H 1.09004 * 110.03253 * 119.28078 * 25 24 23 48 48 H 1.08995 * 115.55299 * 34.41595 * 26 2 1 49 49 H 1.08997 * 117.49846 * 0.02562 * 27 26 2 50 50 H 1.08997 * 117.49363 * 145.02071 * 27 26 2 51 51 H 1.09000 * 117.49742 * 214.98326 * 28 26 2 52 52 H 1.09002 * 117.49888 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.2851 -0.8711 -3.6486 8 6 3.8115 -0.7692 -3.6176 9 7 4.2050 0.6357 -3.4455 10 6 5.6623 0.7613 -3.3103 11 6 6.0274 2.2131 -3.1365 12 8 5.1589 3.0597 -3.1259 13 7 7.3189 2.5707 -2.9930 14 6 7.6509 3.8913 -2.8344 15 1 6.8776 4.6451 -2.8241 16 6 8.9824 4.2601 -2.6869 17 7 9.9235 3.3428 -2.6989 18 14 9.4350 6.0596 -2.4716 19 1 8.7778 6.5926 -1.2511 20 1 10.9083 6.1868 -2.3367 21 1 8.9784 6.8301 -3.6561 22 6 1.7208 -0.2105 -4.9309 23 6 0.3485 -0.9087 -5.0995 24 6 0.6133 -2.3695 -4.6799 25 6 1.8446 -2.3455 -3.7574 26 6 2.0400 -0.7212 1.2493 27 6 2.7393 0.1231 2.3165 28 6 3.5550 -0.8262 1.4353 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.0863 0.4902 -2.5451 33 1 4.1982 -1.3592 -2.7868 34 1 4.2200 -1.1488 -4.5541 35 1 3.7316 1.0497 -2.6565 36 1 5.9967 0.1956 -2.4407 37 1 6.1454 0.3703 -4.2057 38 1 8.0135 1.8936 -3.0018 39 1 10.8530 3.6003 -2.5964 40 1 1.5932 0.8627 -4.7884 41 1 2.3654 -0.4138 -5.7859 42 1 0.0227 -0.8635 -6.1387 43 1 -0.3946 -0.4527 -4.4455 44 1 0.8178 -2.9795 -5.5597 45 1 -0.2483 -2.7655 -4.1425 46 1 2.6466 -2.9439 -4.1895 47 1 1.5806 -2.7299 -2.7722 48 1 1.4319 -1.5594 1.5894 49 1 2.8357 1.1925 2.1287 50 1 2.5915 -0.1598 3.3586 51 1 3.9436 -1.7334 1.8982 52 1 4.1884 -0.3818 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753500686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = -62.963816 kcal Electronic energy + Delta-G solvation = -30731.558035 eV Core-core repulsion = 26730.895601 eV Total energy + Delta-G solvation = -4000.662434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.70532 -38.61864 -38.09221 -36.71868 -34.99845 -33.84360 -33.64138 -32.11057 -31.18603 -29.30535 -28.85757 -26.53338 -24.94642 -24.36668 -22.75976 -22.36245 -22.08462 -20.68847 -19.95718 -19.45299 -19.02419 -17.85008 -17.23553 -16.48004 -15.93982 -15.63710 -15.47050 -15.15063 -14.88345 -14.70380 -14.40702 -14.28972 -14.09139 -13.91384 -13.50352 -13.30333 -13.21984 -12.79498 -12.50861 -12.47348 -11.97647 -11.77914 -11.60676 -11.58810 -11.56730 -11.50896 -11.32883 -11.29563 -11.14665 -11.12411 -11.02271 -10.78025 -10.59110 -10.43096 -10.41382 -10.19368 -10.11749 -9.47917 -9.44615 -9.05557 -8.37159 -7.96541 -7.90294 -6.39107 -3.80041 2.66694 3.06644 3.21271 3.26773 3.31068 3.86563 3.94586 4.10417 4.26918 4.41766 4.51803 4.55460 4.69604 4.76256 4.77230 4.99458 5.10965 5.12003 5.14359 5.21918 5.28093 5.31913 5.36750 5.41904 5.49008 5.52585 5.56170 5.64584 5.68655 5.73305 5.77894 5.80254 5.82274 5.88554 5.94582 5.96059 5.98079 6.04745 6.07945 6.11253 6.16913 6.21608 6.26161 6.31771 6.64327 7.28703 7.52788 7.56937 7.74545 8.08752 8.27053 8.64202 9.20114 9.57421 10.08953 10.78634 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.003151 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.484170 B = 8883.727905 C =10528.870390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.099 0.901 4 C 0.518 3.482 5 O -0.527 6.527 6 N -0.717 5.717 7 C 0.179 3.821 8 C 0.051 3.949 9 N -0.662 5.662 10 C 0.050 3.950 11 C 0.443 3.557 12 O -0.585 6.585 13 N -0.564 5.564 14 C -0.300 4.300 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.184 4.184 28 C -0.154 4.154 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.344 0.656 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.213 -11.924 2.129 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.117 0.883 4 C 0.304 3.696 5 O -0.402 6.402 6 N -0.369 5.369 7 C 0.093 3.907 8 C -0.080 4.080 9 N -0.294 5.294 10 C -0.083 4.083 11 C 0.228 3.772 12 O -0.469 6.469 13 N -0.200 5.200 14 C -0.429 4.429 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.150 4.150 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.164 4.164 26 C -0.153 4.153 27 C -0.221 4.221 28 C -0.191 4.191 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.110 0.890 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.043 -11.906 1.557 22.513 hybrid contribution 0.713 0.455 0.941 1.265 sum -18.331 -11.451 2.498 21.758 Atomic orbital electron populations 1.21723 0.92728 1.02509 1.02662 1.20951 0.97359 1.00354 0.91976 0.88280 1.20577 0.80152 0.84503 0.84354 1.90675 1.37452 1.25414 1.86702 1.46070 1.48416 1.37253 1.05197 1.21132 0.92279 0.92543 0.84741 1.22342 0.93628 0.90280 1.01738 1.60127 1.05632 1.14481 1.49160 1.21668 0.89419 0.96296 1.00888 1.19814 0.83606 0.89518 0.84253 1.90498 1.48407 1.51992 1.56015 1.41858 1.05773 1.09011 1.63384 1.19642 0.92733 0.83951 1.46599 0.88028 1.25257 0.95337 0.99921 0.97404 1.69610 1.00944 1.33538 1.50233 0.85927 0.77123 0.82143 0.79068 1.19936 1.20982 1.19896 1.22666 0.95770 1.00335 0.96260 1.22419 0.97498 0.95441 1.01103 1.22129 0.97859 0.96951 0.99094 1.22462 0.97659 0.95578 1.00710 1.21888 0.96222 1.01378 0.95790 1.23108 1.05081 0.97846 0.96064 1.22775 0.93280 1.00963 1.02052 0.92100 0.92189 0.91324 0.76562 0.93435 0.90562 0.83622 0.94116 0.89725 0.77469 0.91836 0.90173 0.89772 0.91594 0.91903 0.91935 0.92292 0.91125 0.90480 0.87821 0.88725 0.88907 0.88988 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.07 37.16 0.34 -0.69 16 2 C -0.09 -0.85 2.89 -91.77 -0.27 -1.11 16 3 H 0.10 1.01 7.90 -51.93 -0.41 0.60 16 4 C 0.52 6.20 6.15 -10.99 -0.07 6.13 16 5 O -0.53 -7.87 11.98 5.56 0.07 -7.80 16 6 N -0.72 -7.54 4.11 -46.07 -0.19 -7.73 16 7 C 0.18 2.01 0.53 -130.16 -0.07 1.94 16 8 C 0.05 0.70 4.29 -3.82 -0.02 0.68 16 9 N -0.66 -11.08 6.00 -115.06 -0.69 -11.77 16 10 C 0.05 0.94 6.16 -4.97 -0.03 0.91 16 11 C 0.44 10.71 7.82 -10.98 -0.09 10.62 16 12 O -0.58 -15.95 15.78 5.55 0.09 -15.87 16 13 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 14 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 15 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 16 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 18 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C -0.11 -1.14 5.70 -24.74 -0.14 -1.28 16 23 C -0.13 -1.04 6.79 -25.07 -0.17 -1.21 16 24 C -0.12 -1.05 6.80 -25.61 -0.17 -1.22 16 25 C -0.13 -1.32 5.66 -25.62 -0.14 -1.47 16 26 C -0.13 -1.43 4.72 -90.62 -0.43 -1.85 16 27 C -0.18 -1.89 10.18 -26.69 -0.27 -2.16 16 28 C -0.15 -1.89 8.98 -26.69 -0.24 -2.13 16 29 H 0.06 0.38 7.45 -51.93 -0.39 -0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.40 3.52 7.76 -40.82 -0.32 3.20 16 33 H 0.05 0.75 6.55 -51.93 -0.34 0.40 16 34 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 35 H 0.34 6.06 7.39 -39.29 -0.29 5.77 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 39 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 47 H 0.08 0.94 6.41 -51.93 -0.33 0.61 16 48 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 49 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 LS Contribution 412.51 15.07 6.22 6.22 Total: -1.00 -31.94 412.51 -9.93 -41.88 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -9.06 Total: 18.63 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.01 Total: -0.94 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.21 Total: -58.36 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: 0.15 Total: -23.67 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.94 -9.93 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753500686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.089 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds