Wall clock time and date at job start Tue Mar 31 2020 20:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47252 * 2 1 4 4 C 1.50702 * 109.47217 * 240.00374 * 2 1 3 5 5 O 1.21279 * 120.00154 * 240.00543 * 4 2 1 6 6 N 1.34777 * 120.00169 * 60.00104 * 4 2 1 7 7 C 1.46494 * 120.00131 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.57787 * 59.84312 * 7 6 4 9 9 C 1.53124 * 109.52420 * 179.97438 * 7 6 4 10 10 C 1.53037 * 109.28010 * 62.24813 * 9 7 6 11 11 N 1.46852 * 109.52196 * 59.17734 * 10 9 7 12 12 C 1.46894 * 110.99840 * 174.16000 * 11 10 9 13 13 C 1.50697 * 109.47436 * 293.61408 * 12 11 10 14 14 O 1.21291 * 119.99911 * 353.73505 * 13 12 11 15 15 N 1.34778 * 119.99898 * 173.45699 * 13 12 11 16 16 C 1.37106 * 119.99830 * 180.27229 * 15 13 12 17 17 H 1.07995 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.38947 * 119.99786 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99665 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00066 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47335 * 90.00122 * 20 18 16 22 22 H 1.48503 * 109.46919 * 209.99482 * 20 18 16 23 23 H 1.48500 * 109.47353 * 329.99505 * 20 18 16 24 24 C 1.46847 * 111.19943 * 298.26095 * 11 10 9 25 25 C 1.53032 * 109.52231 * 61.74221 * 24 11 10 26 26 C 1.52996 * 109.47111 * 120.00243 * 2 1 3 27 27 C 1.52992 * 117.50333 * 248.74722 * 26 2 1 28 28 C 1.52996 * 117.50178 * 180.08327 * 26 2 1 29 29 H 1.08999 * 109.47369 * 300.00079 * 1 2 3 30 30 H 1.09006 * 109.46876 * 59.99366 * 1 2 3 31 31 H 1.08998 * 109.47169 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99602 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.47233 * 180.16323 * 8 7 6 34 34 H 1.09001 * 109.46814 * 300.15948 * 8 7 6 35 35 H 1.09002 * 109.47421 * 60.15404 * 8 7 6 36 36 H 1.09003 * 109.50310 * 302.30940 * 9 7 6 37 37 H 1.08995 * 109.53699 * 182.20964 * 9 7 6 38 38 H 1.09008 * 109.45955 * 299.16781 * 10 9 7 39 39 H 1.08993 * 109.46697 * 179.19931 * 10 9 7 40 40 H 1.09006 * 109.47265 * 173.61143 * 12 11 10 41 41 H 1.09005 * 109.47135 * 53.61382 * 12 11 10 42 42 H 0.97001 * 120.00195 * 0.27492 * 15 13 12 43 43 H 0.97003 * 120.00280 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.45875 * 181.75384 * 24 11 10 45 45 H 1.08996 * 109.45995 * 301.72651 * 24 11 10 46 46 H 1.09001 * 109.50686 * 180.87705 * 25 24 11 47 47 H 1.09002 * 109.54193 * 60.77869 * 25 24 11 48 48 H 1.09004 * 115.54958 * 34.42080 * 26 2 1 49 49 H 1.09005 * 117.49584 * 359.97438 * 27 26 2 50 50 H 1.08994 * 117.50384 * 145.01996 * 27 26 2 51 51 H 1.09004 * 117.50473 * 214.98143 * 28 26 2 52 52 H 1.09007 * 117.49872 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9406 -3.6508 8 6 1.6887 -2.3845 -3.6511 9 6 1.6846 -0.2200 -4.9018 10 6 2.2429 1.2047 -4.9273 11 7 3.7106 1.1565 -4.9325 12 6 4.2808 2.5003 -5.0962 13 6 3.9417 3.0263 -6.4671 14 8 3.3887 2.3077 -7.2727 15 7 4.2479 4.2970 -6.7961 16 6 3.9343 4.7772 -8.0414 17 1 3.4417 4.1375 -8.7586 18 6 4.2495 6.0874 -8.3803 19 7 3.9485 6.5478 -9.5738 20 14 5.1010 7.1941 -7.1396 21 1 6.5727 7.0641 -7.2884 22 1 4.7020 8.6044 -7.3787 23 1 4.7050 6.7938 -5.7655 24 6 4.2251 0.5109 -3.7180 25 6 3.7259 -0.9344 -3.6565 26 6 2.0400 -0.7213 1.2492 27 6 2.7392 0.1229 2.3165 28 6 3.5549 -0.8265 1.4353 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.1488 0.5386 -2.5435 33 1 2.0550 -2.8977 -4.5403 34 1 2.0519 -2.8970 -2.7603 35 1 0.5987 -2.3876 -3.6529 36 1 0.5953 -0.1836 -4.8821 37 1 2.0147 -0.7562 -5.7914 38 1 1.9004 1.7448 -4.0445 39 1 1.8931 1.7159 -5.8240 40 1 5.3639 2.4517 -4.9834 41 1 3.8661 3.1658 -4.3390 42 1 4.6901 4.8717 -6.1518 43 1 4.1688 7.4623 -9.8106 44 1 5.3148 0.5182 -3.7367 45 1 3.8733 1.0543 -2.8411 46 1 4.0951 -1.4086 -2.7472 47 1 4.0887 -1.4827 -4.5259 48 1 1.4318 -1.5596 1.5892 49 1 2.8364 1.1922 2.1285 50 1 2.5915 -0.1601 3.3586 51 1 3.9435 -1.7336 1.8981 52 1 4.1884 -0.3814 0.6679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754624954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:19 Heat of formation + Delta-G solvation = -42.586558 kcal Electronic energy + Delta-G solvation = -30708.096170 eV Core-core repulsion = 26708.317361 eV Total energy + Delta-G solvation = -3999.778810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88849 -39.17431 -38.12561 -36.97701 -35.09168 -33.89393 -33.29436 -31.69040 -31.17383 -30.81008 -29.10658 -26.24526 -25.13690 -23.96729 -23.24993 -22.63257 -22.43143 -21.38636 -20.03880 -19.35192 -19.11907 -18.27585 -17.39452 -16.26439 -15.92175 -15.75597 -15.35271 -15.03025 -15.00030 -14.89213 -14.54138 -14.32675 -14.05367 -13.72600 -13.61731 -13.24153 -13.05686 -12.87334 -12.65077 -12.56734 -12.33422 -12.21796 -12.14109 -12.00480 -11.84509 -11.77458 -11.58721 -11.37299 -11.31553 -11.08852 -11.04457 -10.67203 -10.60926 -10.55710 -10.39158 -10.30786 -9.98350 -9.55267 -9.42886 -9.11554 -8.54106 -8.18131 -7.93016 -6.31763 -3.83019 2.54968 2.95586 3.01007 3.05897 3.13994 3.66245 3.74337 3.94707 4.09483 4.21995 4.44127 4.54704 4.64637 4.74876 4.78238 4.81814 4.91881 4.93280 4.96144 5.15582 5.19815 5.28764 5.35448 5.37083 5.40582 5.44815 5.49862 5.56717 5.62931 5.67058 5.67923 5.71360 5.72941 5.76592 5.81917 5.87313 5.92072 5.97111 5.98926 6.03019 6.18355 6.21356 6.24883 6.36017 6.57052 7.19908 7.35082 7.44422 7.58634 8.14176 8.15983 8.60157 8.95000 9.42254 9.83718 10.81425 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.002630 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.533060 B =10641.814900 C =11529.780574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 H 0.094 0.906 4 C 0.519 3.481 5 O -0.528 6.528 6 N -0.721 5.721 7 C 0.175 3.825 8 C -0.160 4.160 9 C -0.115 4.115 10 C 0.056 3.944 11 N -0.512 5.512 12 C 0.044 3.956 13 C 0.453 3.547 14 O -0.557 6.557 15 N -0.593 5.593 16 C -0.303 4.303 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.060 3.940 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.186 4.186 28 C -0.154 4.154 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.396 0.604 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.019 0.981 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -12.341 23.058 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.112 0.888 4 C 0.305 3.695 5 O -0.404 6.404 6 N -0.373 5.373 7 C 0.090 3.910 8 C -0.218 4.218 9 C -0.153 4.153 10 C -0.072 4.072 11 N -0.237 5.237 12 C -0.088 4.088 13 C 0.238 3.762 14 O -0.439 6.439 15 N -0.233 5.233 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.068 4.068 25 C -0.161 4.161 26 C -0.152 4.152 27 C -0.223 4.223 28 C -0.191 4.191 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.231 0.769 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.037 0.963 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.123 0.877 49 H 0.110 0.890 50 H 0.112 0.888 51 H 0.111 0.889 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.621 -13.655 22.005 26.306 hybrid contribution 0.200 2.109 1.476 2.582 sum -4.420 -11.546 23.481 26.537 Atomic orbital electron populations 1.21734 0.92603 1.02774 1.02677 1.20928 0.97484 0.99938 0.92142 0.88834 1.20498 0.80046 0.84676 0.84274 1.90630 1.37249 1.25894 1.86599 1.46261 1.53639 1.31933 1.05506 1.20420 0.94248 0.92274 0.84056 1.22171 1.00659 0.95531 1.03432 1.21881 0.99832 0.96349 0.97241 1.22170 0.87295 0.96250 1.01463 1.61494 1.07007 1.18571 1.36603 1.21877 1.00655 0.89788 0.96449 1.19665 0.84901 0.82582 0.89029 1.90544 1.44996 1.56834 1.51493 1.42240 1.55005 1.11071 1.14940 1.19419 1.37000 0.97197 0.89603 0.86279 1.25032 0.97853 0.96868 0.96432 1.69620 1.46605 1.16963 1.19023 0.86679 0.80502 0.81240 0.80988 1.19614 1.20220 1.19600 1.22042 0.99625 0.94848 0.90257 1.21976 0.94069 0.96440 1.03651 1.21902 0.96179 1.01392 0.95678 1.23105 1.05320 0.97582 0.96257 1.22775 0.93442 1.00994 1.01886 0.91338 0.92057 0.91990 0.76888 0.91748 0.90517 0.92948 0.91230 0.89067 0.96260 0.88192 0.89213 0.93769 0.79788 0.91639 0.91028 0.95597 0.89554 0.90329 0.87664 0.88960 0.88846 0.88908 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.07 37.16 0.34 -0.52 16 2 C -0.08 -0.65 2.88 -91.77 -0.26 -0.91 16 3 H 0.09 0.67 7.90 -51.93 -0.41 0.26 16 4 C 0.52 5.26 6.45 -10.98 -0.07 5.19 16 5 O -0.53 -6.80 11.30 5.56 0.06 -6.73 16 6 N -0.72 -6.86 4.05 -47.49 -0.19 -7.05 16 7 C 0.18 1.92 0.66 -131.70 -0.09 1.84 16 8 C -0.16 -1.70 8.42 37.16 0.31 -1.39 16 9 C -0.11 -1.38 4.93 -26.65 -0.13 -1.51 16 10 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 11 N -0.51 -7.98 4.35 -236.12 -1.03 -9.01 16 12 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 13 C 0.45 10.08 7.31 -10.99 -0.08 10.00 16 14 O -0.56 -14.53 14.29 5.55 0.08 -14.45 16 15 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 16 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 17 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 18 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 20 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 24 C 0.06 0.78 5.31 -3.84 -0.02 0.76 16 25 C -0.12 -1.50 4.72 -26.65 -0.13 -1.63 16 26 C -0.13 -1.08 4.72 -90.63 -0.43 -1.51 16 27 C -0.19 -1.32 10.18 -26.70 -0.27 -1.59 16 28 C -0.15 -1.36 8.98 -26.70 -0.24 -1.60 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 3.24 6.89 -40.82 -0.28 2.96 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.93 6.16 -51.93 -0.32 0.61 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.25 7.02 -51.92 -0.36 -0.12 16 39 H 0.10 1.82 6.06 -51.93 -0.31 1.51 16 40 H 0.09 1.34 7.98 -51.93 -0.41 0.93 16 41 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 42 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 44 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 45 H 0.03 0.32 7.69 -51.93 -0.40 -0.08 16 46 H 0.09 1.12 6.14 -51.93 -0.32 0.80 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 49 H 0.09 0.61 8.05 -51.93 -0.42 0.20 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.09 0.92 8.10 -51.92 -0.42 0.50 16 LS Contribution 399.71 15.07 6.02 6.02 Total: -1.00 -32.38 399.71 -9.32 -41.70 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -8.91 Total: 12.84 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.36 Total: 0.99 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.50 Total: -54.89 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: 0.14 Total: -21.18 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.38 -9.32 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754624954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.887 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds