Wall clock time and date at job start Tue Mar 31 2020 20:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47252 * 2 1 4 4 C 1.50702 * 109.47217 * 240.00374 * 2 1 3 5 5 O 1.21279 * 120.00154 * 240.00543 * 4 2 1 6 6 N 1.34777 * 120.00169 * 60.00104 * 4 2 1 7 7 C 1.46494 * 120.00131 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.57787 * 59.84312 * 7 6 4 9 9 C 1.53124 * 109.52420 * 179.97438 * 7 6 4 10 10 C 1.53037 * 109.28010 * 62.24813 * 9 7 6 11 11 N 1.46852 * 109.52196 * 59.17734 * 10 9 7 12 12 C 1.46894 * 110.99840 * 174.16000 * 11 10 9 13 13 C 1.50697 * 109.47436 * 293.61408 * 12 11 10 14 14 O 1.21291 * 119.99911 * 353.73505 * 13 12 11 15 15 N 1.34778 * 119.99898 * 173.45699 * 13 12 11 16 16 C 1.37106 * 119.99830 * 180.27229 * 15 13 12 17 17 H 1.07995 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.38947 * 119.99786 * 179.97438 * 16 15 13 19 19 N 1.31410 * 119.99665 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00066 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47335 * 90.00122 * 20 18 16 22 22 H 1.48503 * 109.46919 * 209.99482 * 20 18 16 23 23 H 1.48500 * 109.47353 * 329.99505 * 20 18 16 24 24 C 1.46847 * 111.19943 * 298.26095 * 11 10 9 25 25 C 1.53032 * 109.52231 * 61.74221 * 24 11 10 26 26 C 1.52996 * 109.47111 * 120.00243 * 2 1 3 27 27 C 1.52992 * 117.50333 * 248.74722 * 26 2 1 28 28 C 1.52996 * 117.50178 * 180.08327 * 26 2 1 29 29 H 1.08999 * 109.47369 * 300.00079 * 1 2 3 30 30 H 1.09006 * 109.46876 * 59.99366 * 1 2 3 31 31 H 1.08998 * 109.47169 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99602 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.47233 * 180.16323 * 8 7 6 34 34 H 1.09001 * 109.46814 * 300.15948 * 8 7 6 35 35 H 1.09002 * 109.47421 * 60.15404 * 8 7 6 36 36 H 1.09003 * 109.50310 * 302.30940 * 9 7 6 37 37 H 1.08995 * 109.53699 * 182.20964 * 9 7 6 38 38 H 1.09008 * 109.45955 * 299.16781 * 10 9 7 39 39 H 1.08993 * 109.46697 * 179.19931 * 10 9 7 40 40 H 1.09006 * 109.47265 * 173.61143 * 12 11 10 41 41 H 1.09005 * 109.47135 * 53.61382 * 12 11 10 42 42 H 0.97001 * 120.00195 * 0.27492 * 15 13 12 43 43 H 0.97003 * 120.00280 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.45875 * 181.75384 * 24 11 10 45 45 H 1.08996 * 109.45995 * 301.72651 * 24 11 10 46 46 H 1.09001 * 109.50686 * 180.87705 * 25 24 11 47 47 H 1.09002 * 109.54193 * 60.77869 * 25 24 11 48 48 H 1.09004 * 115.54958 * 34.42080 * 26 2 1 49 49 H 1.09005 * 117.49584 * 359.97438 * 27 26 2 50 50 H 1.08994 * 117.50384 * 145.01996 * 27 26 2 51 51 H 1.09004 * 117.50473 * 214.98143 * 28 26 2 52 52 H 1.09007 * 117.49872 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9406 -3.6508 8 6 1.6887 -2.3845 -3.6511 9 6 1.6846 -0.2200 -4.9018 10 6 2.2429 1.2047 -4.9273 11 7 3.7106 1.1565 -4.9325 12 6 4.2808 2.5003 -5.0962 13 6 3.9417 3.0263 -6.4671 14 8 3.3887 2.3077 -7.2727 15 7 4.2479 4.2970 -6.7961 16 6 3.9343 4.7772 -8.0414 17 1 3.4417 4.1375 -8.7586 18 6 4.2495 6.0874 -8.3803 19 7 3.9485 6.5478 -9.5738 20 14 5.1010 7.1941 -7.1396 21 1 6.5727 7.0641 -7.2884 22 1 4.7020 8.6044 -7.3787 23 1 4.7050 6.7938 -5.7655 24 6 4.2251 0.5109 -3.7180 25 6 3.7259 -0.9344 -3.6565 26 6 2.0400 -0.7213 1.2492 27 6 2.7392 0.1229 2.3165 28 6 3.5549 -0.8265 1.4353 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.1488 0.5386 -2.5435 33 1 2.0550 -2.8977 -4.5403 34 1 2.0519 -2.8970 -2.7603 35 1 0.5987 -2.3876 -3.6529 36 1 0.5953 -0.1836 -4.8821 37 1 2.0147 -0.7562 -5.7914 38 1 1.9004 1.7448 -4.0445 39 1 1.8931 1.7159 -5.8240 40 1 5.3639 2.4517 -4.9834 41 1 3.8661 3.1658 -4.3390 42 1 4.6901 4.8717 -6.1518 43 1 4.1688 7.4623 -9.8106 44 1 5.3148 0.5182 -3.7367 45 1 3.8733 1.0543 -2.8411 46 1 4.0951 -1.4086 -2.7472 47 1 4.0887 -1.4827 -4.5259 48 1 1.4318 -1.5596 1.5892 49 1 2.8364 1.1922 2.1285 50 1 2.5915 -0.1601 3.3586 51 1 3.9435 -1.7336 1.8981 52 1 4.1884 -0.3814 0.6679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754624954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:18 Heat of formation + Delta-G solvation = -65.278231 kcal Electronic energy + Delta-G solvation = -30709.080155 eV Core-core repulsion = 26708.317361 eV Total energy + Delta-G solvation = -4000.762795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77702 -40.49919 -39.40712 -37.82469 -36.28921 -35.73877 -34.03205 -33.72219 -31.98209 -31.85832 -30.28332 -27.74834 -25.77681 -25.55649 -24.31582 -23.39669 -23.11294 -22.37394 -21.23874 -20.75085 -20.19801 -20.02156 -18.15687 -17.75527 -16.97174 -16.82122 -16.59237 -16.46818 -16.06269 -15.80672 -15.48602 -15.37731 -15.17725 -15.00892 -14.94621 -14.58186 -14.36942 -14.11807 -13.75755 -13.49849 -13.41268 -13.27869 -13.20388 -12.99176 -12.85212 -12.66399 -12.61798 -12.40577 -12.35751 -12.26284 -12.15580 -11.97804 -11.91902 -11.62124 -11.51055 -11.39038 -11.20529 -10.92468 -10.37681 -10.24141 -10.19817 -9.96478 -9.14459 -8.39749 -6.00077 1.30202 1.36108 1.44513 1.78605 1.98263 2.19487 2.23735 2.62436 3.03619 3.16353 3.23841 3.62107 3.65882 3.80023 3.88618 3.94297 3.98461 4.11220 4.21298 4.24940 4.30153 4.34718 4.39115 4.39774 4.49532 4.52005 4.57810 4.62556 4.73672 4.82777 4.84478 4.86057 4.90465 4.96676 5.00835 5.06777 5.08892 5.10333 5.19533 5.22838 5.27504 5.29881 5.33532 5.39189 5.54722 5.69332 5.92770 6.06692 6.23883 6.62029 6.69357 6.90749 7.40019 7.42344 7.99793 8.77922 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.002630 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.533060 B =10641.814900 C =11529.780574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 H 0.106 0.894 4 C 0.517 3.483 5 O -0.557 6.557 6 N -0.714 5.714 7 C 0.183 3.817 8 C -0.154 4.154 9 C -0.107 4.107 10 C 0.059 3.941 11 N -0.534 5.534 12 C 0.055 3.945 13 C 0.453 3.547 14 O -0.602 6.602 15 N -0.594 5.594 16 C -0.324 4.324 17 H 0.056 0.944 18 C -0.016 4.016 19 N -0.936 5.936 20 Si 0.964 3.036 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.231 1.231 24 C 0.067 3.933 25 C -0.119 4.119 26 C -0.139 4.139 27 C -0.167 4.167 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.406 0.594 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.388 0.612 43 H 0.278 0.722 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -11.166 26.975 29.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.124 0.876 4 C 0.305 3.695 5 O -0.435 6.435 6 N -0.367 5.367 7 C 0.097 3.903 8 C -0.212 4.212 9 C -0.145 4.145 10 C -0.069 4.069 11 N -0.259 5.259 12 C -0.076 4.076 13 C 0.241 3.759 14 O -0.486 6.486 15 N -0.236 5.236 16 C -0.453 4.453 17 H 0.074 0.926 18 C -0.214 4.214 19 N -0.576 5.576 20 Si 0.784 3.216 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.155 1.155 24 C -0.060 4.060 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.204 4.204 28 C -0.208 4.208 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.242 0.758 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.106 0.894 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.308 -12.491 25.951 29.121 hybrid contribution 0.046 1.600 0.170 1.610 sum -4.263 -10.890 26.120 28.619 Atomic orbital electron populations 1.21734 0.91200 1.02694 1.03830 1.20937 0.98519 0.99990 0.90456 0.87559 1.20953 0.79382 0.84302 0.84871 1.90629 1.38604 1.27310 1.86993 1.46159 1.53548 1.32068 1.04907 1.20228 0.93469 0.92456 0.84155 1.22096 1.01198 0.95115 1.02778 1.21785 1.00851 0.94815 0.97039 1.22067 0.87004 0.97439 1.00392 1.61431 1.07629 1.18295 1.38570 1.21800 1.02395 0.90734 0.92703 1.20840 0.82597 0.81632 0.90841 1.90533 1.46415 1.57949 1.53681 1.42062 1.55803 1.11979 1.13757 1.18983 1.38174 0.97333 0.90847 0.92605 1.26088 0.98127 0.98224 0.98983 1.69805 1.48106 1.17836 1.21900 0.85381 0.79158 0.77823 0.79257 1.18359 1.20092 1.15457 1.22027 0.99952 0.94710 0.89333 1.21908 0.94950 0.96047 1.02815 1.21966 0.95498 1.01848 0.96428 1.23162 1.03139 0.97682 0.96424 1.22728 0.93878 1.01624 1.02600 0.90010 0.91107 0.92705 0.75781 0.91722 0.91815 0.91979 0.89386 0.90981 0.93845 0.92414 0.86684 0.90642 0.77644 0.91224 0.90400 0.94292 0.90068 0.91424 0.87980 0.88008 0.87752 0.89413 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.07 71.98 0.65 -0.62 16 2 C -0.08 -1.00 2.88 -11.54 -0.03 -1.03 16 3 H 0.11 1.13 7.90 -2.39 -0.02 1.11 16 4 C 0.52 9.44 6.45 87.66 0.57 10.01 16 5 O -0.56 -13.78 11.30 -3.03 -0.03 -13.81 16 6 N -0.71 -11.89 4.05 -422.56 -1.71 -13.60 16 7 C 0.18 3.75 0.66 3.69 0.00 3.75 16 8 C -0.15 -3.12 8.42 71.98 0.61 -2.52 16 9 C -0.11 -2.47 4.93 30.65 0.15 -2.32 16 10 C 0.06 1.64 4.96 86.32 0.43 2.07 16 11 N -0.53 -15.76 4.35 -900.94 -3.92 -19.68 16 12 C 0.05 1.68 5.45 85.56 0.47 2.14 16 13 C 0.45 20.13 7.31 87.66 0.64 20.77 16 14 O -0.60 -32.68 14.29 -3.07 -0.04 -32.72 16 15 N -0.59 -27.64 5.09 -306.99 -1.56 -29.20 16 16 C -0.32 -18.80 10.16 84.04 0.85 -17.95 16 17 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 18 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 19 N -0.94 -56.19 13.96 21.66 0.30 -55.89 16 20 Si 0.96 38.45 27.74 68.60 1.90 40.35 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 24 C 0.07 1.57 5.31 86.32 0.46 2.02 16 25 C -0.12 -2.76 4.72 30.65 0.14 -2.61 16 26 C -0.14 -1.99 4.72 -10.80 -0.05 -2.04 16 27 C -0.17 -1.96 10.18 30.62 0.31 -1.64 16 28 C -0.17 -2.82 8.98 30.62 0.27 -2.55 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.53 7.56 -2.38 -0.02 0.51 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.41 5.33 6.89 -92.71 -0.64 4.69 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.50 6.16 -2.39 -0.01 1.49 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.04 0.99 7.02 -2.38 -0.02 0.97 16 39 H 0.06 2.14 6.06 -2.39 -0.01 2.12 16 40 H 0.12 3.00 7.98 -2.38 -0.02 2.98 16 41 H 0.08 1.89 8.12 -2.38 -0.02 1.88 16 42 H 0.39 14.97 5.76 -92.71 -0.53 14.44 16 43 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.08 1.74 8.01 -2.39 -0.02 1.72 16 45 H 0.04 0.82 7.69 -2.39 -0.02 0.81 16 46 H 0.08 2.03 6.14 -2.39 -0.01 2.01 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.10 1.52 8.11 -2.38 -0.02 1.50 16 49 H 0.10 1.01 8.05 -2.38 -0.02 0.99 16 50 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 52 H 0.08 1.50 8.10 -2.38 -0.02 1.48 16 Total: -1.00 -76.18 399.71 0.57 -75.61 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.31 Total: 41.87 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.94 Total: 7.07 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -6.89 Total: -118.37 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.08 Total: -46.54 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -76.18 0.57 -75.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754624954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.336 kcal (2) G-P(sol) polarization free energy of solvation -76.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds