Wall clock time and date at job start Tue Mar 31 2020 20:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64092 * 2 1 4 4 C 1.54324 * 110.72001 * 123.14135 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.65611 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21289 * 119.99816 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00483 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47482 * 179.97438 * 8 6 5 10 10 C 1.34771 * 120.00222 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99773 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.52995 * 109.47062 * 300.00033 * 12 10 9 14 14 C 1.53008 * 109.47049 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47108 * 59.99824 * 14 13 12 16 16 C 1.52995 * 109.47309 * 300.00016 * 15 14 13 17 17 C 1.52999 * 109.47136 * 60.00118 * 16 15 14 18 18 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 19 19 C 1.54909 * 104.83995 * 335.74644 * 18 5 4 20 20 H 1.08989 * 111.04037 * 279.00643 * 19 18 5 21 21 N 1.46498 * 111.00162 * 155.16578 * 19 18 5 22 22 C 1.36942 * 120.00022 * 92.80865 * 21 19 18 23 23 H 1.08006 * 119.99757 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00359 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00105 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99999 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47510 * 89.99780 * 26 24 22 28 28 H 1.48502 * 109.47233 * 210.00069 * 26 24 22 29 29 H 1.48508 * 109.46948 * 329.99638 * 26 24 22 30 30 H 1.08998 * 109.46692 * 298.31216 * 1 2 3 31 31 H 1.08997 * 109.47070 * 58.30879 * 1 2 3 32 32 H 1.09002 * 109.47183 * 178.31263 * 1 2 3 33 33 H 1.09002 * 109.88322 * 260.15141 * 4 2 1 34 34 H 1.09000 * 109.88025 * 21.16306 * 4 2 1 35 35 H 1.09004 * 109.46826 * 300.00015 * 8 6 5 36 36 H 1.08999 * 109.47133 * 59.99882 * 8 6 5 37 37 H 0.97006 * 119.99672 * 0.02562 * 9 8 6 38 38 H 1.09000 * 109.47567 * 60.00263 * 12 10 9 39 39 H 1.09003 * 109.47655 * 299.99989 * 13 12 10 40 40 H 1.09002 * 109.47379 * 60.00225 * 13 12 10 41 41 H 1.08999 * 109.46899 * 299.99874 * 14 13 12 42 42 H 1.09004 * 109.46985 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.46729 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46925 * 60.00663 * 15 14 13 45 45 H 1.08999 * 109.47167 * 300.00238 * 16 15 14 46 46 H 1.08998 * 109.46892 * 179.97438 * 16 15 14 47 47 H 1.08995 * 109.47587 * 179.97438 * 17 16 15 48 48 H 1.08999 * 109.46995 * 60.00014 * 17 16 15 49 49 H 1.09003 * 110.29227 * 216.94505 * 18 5 4 50 50 H 1.08996 * 110.53057 * 94.67717 * 18 5 4 51 51 H 0.96998 * 120.00750 * 272.81024 * 21 19 18 52 52 H 0.96998 * 120.00300 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2464 -1.5488 0.7453 6 6 3.9920 -2.3804 1.4996 7 8 3.7156 -2.5511 2.6682 8 6 5.1692 -3.0982 0.8912 9 7 5.8104 -3.9345 1.9088 10 6 6.8914 -4.6736 1.5903 11 8 7.3337 -4.6460 0.4613 12 6 7.5507 -5.5344 2.6370 13 6 8.0320 -4.6541 3.7920 14 6 8.7019 -5.5280 4.8544 15 6 9.8968 -6.2566 4.2361 16 6 9.4154 -7.1369 3.0811 17 6 8.7456 -6.2631 2.0187 18 6 3.4674 -1.2455 -0.6837 19 6 2.0828 -0.7949 -1.2124 20 1 1.4512 -1.6542 -1.4370 21 7 2.2251 0.0698 -2.3864 22 6 2.1937 -0.4719 -3.6437 23 1 2.0636 -1.5367 -3.7698 24 6 2.3280 0.3474 -4.7561 25 7 2.2973 -0.1732 -5.9645 26 14 2.5522 2.1890 -4.5380 27 1 4.0002 2.5034 -4.4406 28 1 1.9687 2.9003 -5.7038 29 1 1.8658 2.6277 -3.2963 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 2.3712 -0.0991 1.9991 34 1 1.3131 -1.4734 1.5798 35 1 4.8265 -3.7253 0.0681 36 1 5.8864 -2.3676 0.5172 37 1 5.4564 -3.9569 2.8117 38 1 6.8334 -6.2648 3.0113 39 1 8.7494 -3.9237 3.4178 40 1 7.1808 -4.1347 4.2322 41 1 7.9849 -6.2586 5.2288 42 1 9.0445 -4.9008 5.6775 43 1 10.3737 -6.8795 4.9929 44 1 10.6138 -5.5259 3.8618 45 1 8.6984 -7.8675 3.4555 46 1 10.2668 -7.6556 2.6404 47 1 8.4030 -6.8901 1.1956 48 1 9.4626 -5.5325 1.6444 49 1 3.8032 -2.1378 -1.2120 50 1 4.1960 -0.4426 -0.7958 51 1 2.3416 1.0261 -2.2732 52 1 2.3914 0.3993 -6.7419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755121309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:12 Heat of formation + Delta-G solvation = -81.971850 kcal Electronic energy + Delta-G solvation = -29480.251039 eV Core-core repulsion = 25478.764355 eV Total energy + Delta-G solvation = -4001.486684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60322 -39.86788 -38.08925 -37.59961 -34.61254 -34.29893 -32.71935 -31.60737 -31.12731 -31.04481 -28.48536 -28.00820 -25.83445 -23.94638 -23.54411 -22.84636 -21.50439 -20.70365 -20.26212 -20.03430 -19.38497 -17.71336 -17.67427 -16.72305 -16.41936 -15.94907 -15.85747 -15.28209 -15.04828 -14.65447 -14.43949 -14.37002 -14.18109 -13.92478 -13.46750 -13.37585 -13.29992 -13.05806 -12.90988 -12.71078 -12.67371 -12.51767 -12.36213 -12.08556 -11.88486 -11.60897 -11.48201 -11.47144 -11.21518 -10.98145 -10.86171 -10.76952 -10.73925 -10.45349 -10.42554 -10.11872 -10.02688 -9.85635 -9.70199 -9.29308 -9.11563 -8.59446 -7.46290 -5.89284 -3.28220 2.45726 2.53485 2.64337 3.26179 3.28974 3.31551 3.38392 4.28754 4.31675 4.35709 4.38499 4.47510 4.79397 4.83106 4.84851 4.90357 4.91211 5.00576 5.04910 5.11831 5.16505 5.23536 5.26720 5.32121 5.33016 5.45480 5.49166 5.57902 5.63545 5.67485 5.69078 5.71505 5.75228 5.75828 5.82890 5.88906 5.98417 6.00120 6.02701 6.08134 6.13558 6.20874 6.25276 6.29985 6.42209 6.64703 7.33455 7.49711 7.83579 8.00293 8.08582 8.28846 9.04783 9.76779 9.94086 11.28116 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.002246 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.288638 B =12465.345743 C =13715.797412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.523 3.477 7 O -0.553 6.553 8 C 0.103 3.897 9 N -0.718 5.718 10 C 0.517 3.483 11 O -0.537 6.537 12 C -0.103 4.103 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.122 4.122 16 C -0.120 4.120 17 C -0.100 4.100 18 C 0.067 3.933 19 C 0.183 3.817 20 H 0.079 0.921 21 N -0.733 5.733 22 C -0.255 4.255 23 H 0.093 0.907 24 C 0.011 3.989 25 N -0.927 5.927 26 Si 0.883 3.117 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.410 0.590 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.364 0.636 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.922 -8.870 22.369 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.100 0.900 4 C -0.006 4.006 5 N -0.341 5.341 6 C 0.311 3.689 7 O -0.433 6.433 8 C -0.024 4.024 9 N -0.374 5.374 10 C 0.303 3.697 11 O -0.413 6.413 12 C -0.124 4.124 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.160 4.160 16 C -0.157 4.157 17 C -0.138 4.138 18 C -0.059 4.059 19 C 0.071 3.929 20 H 0.097 0.903 21 N -0.374 5.374 22 C -0.385 4.385 23 H 0.111 0.889 24 C -0.186 4.186 25 N -0.573 5.573 26 Si 0.713 3.287 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.248 0.752 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.198 0.802 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.095 -9.118 21.944 25.444 hybrid contribution -0.003 1.462 0.277 1.488 sum 9.092 -7.655 22.221 25.200 Atomic orbital electron populations 1.21664 0.93612 1.02140 1.01816 1.22573 0.96810 0.99686 0.94758 0.89958 1.21992 0.87261 0.94430 0.96869 1.48489 1.29513 1.43428 1.12652 1.20095 0.83597 0.79202 0.85962 1.90660 1.71299 1.64882 1.16419 1.21037 0.93882 0.95495 0.91988 1.45771 1.30789 1.45996 1.14828 1.20718 0.79608 0.79848 0.89515 1.90735 1.63521 1.65111 1.21960 1.21338 0.98625 0.97565 0.94909 1.21555 1.00955 0.97718 0.94803 1.21526 0.97640 0.98831 0.97506 1.21573 0.97734 0.98951 0.97735 1.21562 1.00342 0.97870 0.95958 1.21357 0.95953 0.98893 0.97581 1.23650 1.02531 1.01551 0.78162 1.21324 0.91908 0.93807 0.85845 0.90323 1.42639 1.87869 1.05006 1.01859 1.19057 1.43569 0.94733 0.81125 0.88948 1.24686 1.01315 0.97500 0.95063 1.69694 1.55962 1.34608 0.97056 0.86586 0.78073 0.86932 0.77104 1.20934 1.21608 1.20223 0.93073 0.91438 0.92497 0.91783 0.91269 0.88120 0.88301 0.75205 0.88414 0.91264 0.91256 0.91692 0.91612 0.91983 0.91854 0.91906 0.91624 0.91095 0.91090 0.90347 0.90848 0.80205 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.14 37.16 0.34 -1.36 16 2 C -0.12 -1.63 3.19 -88.78 -0.28 -1.91 16 3 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 4 C 0.12 1.54 6.45 -3.06 -0.02 1.52 16 5 N -0.61 -8.53 3.34 -170.26 -0.57 -9.10 16 6 C 0.52 7.36 7.92 -10.99 -0.09 7.28 16 7 O -0.55 -8.79 15.99 5.55 0.09 -8.70 16 8 C 0.10 1.31 5.17 -5.20 -0.03 1.28 16 9 N -0.72 -8.28 5.42 -61.47 -0.33 -8.61 16 10 C 0.52 6.23 7.15 -10.99 -0.08 6.15 16 11 O -0.54 -8.52 15.98 5.55 0.09 -8.43 16 12 C -0.10 -0.89 2.53 -91.77 -0.23 -1.12 16 13 C -0.11 -0.82 5.10 -26.73 -0.14 -0.96 16 14 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 15 C -0.12 -0.74 5.92 -26.74 -0.16 -0.90 16 16 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 17 C -0.10 -0.87 4.49 -26.73 -0.12 -0.99 16 18 C 0.07 1.01 6.41 -2.35 -0.02 1.00 16 19 C 0.18 3.09 3.17 -65.78 -0.21 2.88 16 20 H 0.08 1.40 7.99 -51.94 -0.42 0.98 16 21 N -0.73 -15.49 5.05 -51.35 -0.26 -15.75 16 22 C -0.26 -6.64 10.44 -15.06 -0.16 -6.80 16 23 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 24 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 25 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 26 Si 0.88 20.87 27.74 -169.99 -4.71 16.16 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.05 6.52 56.52 0.37 -5.69 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 35 H 0.10 1.29 7.86 -51.93 -0.41 0.89 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.41 4.32 6.86 -40.82 -0.28 4.04 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 48 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 49 H 0.08 1.20 7.50 -51.93 -0.39 0.81 16 50 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.36 7.61 5.62 -40.82 -0.23 7.38 16 52 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -31.63 408.42 -9.65 -41.28 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -9.29 Total: 9.64 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.60 Total: 4.47 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.39 Total: -60.58 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.18 Total: -17.13 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.71 Total: 16.16 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.63 -9.65 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755121309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.692 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds