Wall clock time and date at job start Tue Mar 31 2020 20:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.64092 * 2 1 4 4 C 1.54324 * 110.72001 * 123.14135 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.65611 * 4 2 1 6 6 C 1.34780 * 125.64983 * 181.10309 * 5 4 2 7 7 O 1.21289 * 119.99816 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00483 * 179.97438 * 6 5 4 9 9 N 1.46500 * 109.47482 * 179.97438 * 8 6 5 10 10 C 1.34771 * 120.00222 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99773 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.52995 * 109.47062 * 300.00033 * 12 10 9 14 14 C 1.53008 * 109.47049 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47108 * 59.99824 * 14 13 12 16 16 C 1.52995 * 109.47309 * 300.00016 * 15 14 13 17 17 C 1.52999 * 109.47136 * 60.00118 * 16 15 14 18 18 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 19 19 C 1.54909 * 104.83995 * 335.74644 * 18 5 4 20 20 H 1.08989 * 111.04037 * 279.00643 * 19 18 5 21 21 N 1.46498 * 111.00162 * 155.16578 * 19 18 5 22 22 C 1.36942 * 120.00022 * 92.80865 * 21 19 18 23 23 H 1.08006 * 119.99757 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00359 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00105 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99999 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47510 * 89.99780 * 26 24 22 28 28 H 1.48502 * 109.47233 * 210.00069 * 26 24 22 29 29 H 1.48508 * 109.46948 * 329.99638 * 26 24 22 30 30 H 1.08998 * 109.46692 * 298.31216 * 1 2 3 31 31 H 1.08997 * 109.47070 * 58.30879 * 1 2 3 32 32 H 1.09002 * 109.47183 * 178.31263 * 1 2 3 33 33 H 1.09002 * 109.88322 * 260.15141 * 4 2 1 34 34 H 1.09000 * 109.88025 * 21.16306 * 4 2 1 35 35 H 1.09004 * 109.46826 * 300.00015 * 8 6 5 36 36 H 1.08999 * 109.47133 * 59.99882 * 8 6 5 37 37 H 0.97006 * 119.99672 * 0.02562 * 9 8 6 38 38 H 1.09000 * 109.47567 * 60.00263 * 12 10 9 39 39 H 1.09003 * 109.47655 * 299.99989 * 13 12 10 40 40 H 1.09002 * 109.47379 * 60.00225 * 13 12 10 41 41 H 1.08999 * 109.46899 * 299.99874 * 14 13 12 42 42 H 1.09004 * 109.46985 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.46729 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.46925 * 60.00663 * 15 14 13 45 45 H 1.08999 * 109.47167 * 300.00238 * 16 15 14 46 46 H 1.08998 * 109.46892 * 179.97438 * 16 15 14 47 47 H 1.08995 * 109.47587 * 179.97438 * 17 16 15 48 48 H 1.08999 * 109.46995 * 60.00014 * 17 16 15 49 49 H 1.09003 * 110.29227 * 216.94505 * 18 5 4 50 50 H 1.08996 * 110.53057 * 94.67717 * 18 5 4 51 51 H 0.96998 * 120.00750 * 272.81024 * 21 19 18 52 52 H 0.96998 * 120.00300 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2464 -1.5488 0.7453 6 6 3.9920 -2.3804 1.4996 7 8 3.7156 -2.5511 2.6682 8 6 5.1692 -3.0982 0.8912 9 7 5.8104 -3.9345 1.9088 10 6 6.8914 -4.6736 1.5903 11 8 7.3337 -4.6460 0.4613 12 6 7.5507 -5.5344 2.6370 13 6 8.0320 -4.6541 3.7920 14 6 8.7019 -5.5280 4.8544 15 6 9.8968 -6.2566 4.2361 16 6 9.4154 -7.1369 3.0811 17 6 8.7456 -6.2631 2.0187 18 6 3.4674 -1.2455 -0.6837 19 6 2.0828 -0.7949 -1.2124 20 1 1.4512 -1.6542 -1.4370 21 7 2.2251 0.0698 -2.3864 22 6 2.1937 -0.4719 -3.6437 23 1 2.0636 -1.5367 -3.7698 24 6 2.3280 0.3474 -4.7561 25 7 2.2973 -0.1732 -5.9645 26 14 2.5522 2.1890 -4.5380 27 1 4.0002 2.5034 -4.4406 28 1 1.9687 2.9003 -5.7038 29 1 1.8658 2.6277 -3.2963 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 2.3712 -0.0991 1.9991 34 1 1.3131 -1.4734 1.5798 35 1 4.8265 -3.7253 0.0681 36 1 5.8864 -2.3676 0.5172 37 1 5.4564 -3.9569 2.8117 38 1 6.8334 -6.2648 3.0113 39 1 8.7494 -3.9237 3.4178 40 1 7.1808 -4.1347 4.2322 41 1 7.9849 -6.2586 5.2288 42 1 9.0445 -4.9008 5.6775 43 1 10.3737 -6.8795 4.9929 44 1 10.6138 -5.5259 3.8618 45 1 8.6984 -7.8675 3.4555 46 1 10.2668 -7.6556 2.6404 47 1 8.4030 -6.8901 1.1956 48 1 9.4626 -5.5325 1.6444 49 1 3.8032 -2.1378 -1.2120 50 1 4.1960 -0.4426 -0.7958 51 1 2.3416 1.0261 -2.2732 52 1 2.3914 0.3993 -6.7419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755121309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:10 Heat of formation + Delta-G solvation = -102.494846 kcal Electronic energy + Delta-G solvation = -29481.140983 eV Core-core repulsion = 25478.764355 eV Total energy + Delta-G solvation = -4002.376628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.63745 -40.92676 -39.19917 -38.47189 -36.03524 -35.62669 -34.07514 -32.93918 -32.26652 -31.62894 -29.60344 -29.37845 -26.86257 -25.62390 -24.37309 -23.43721 -22.92716 -21.61842 -21.53645 -20.79201 -20.42528 -19.54580 -18.68799 -17.85906 -17.63195 -17.01129 -16.82205 -16.44323 -16.19512 -15.91641 -15.56461 -15.12323 -15.02085 -14.86650 -14.81376 -14.71612 -14.54225 -14.40730 -14.09033 -13.76342 -13.52659 -13.42055 -13.22630 -13.16456 -13.08806 -12.96920 -12.93958 -12.25252 -12.22640 -12.14416 -12.04270 -11.92736 -11.81977 -11.58321 -11.46075 -11.36000 -11.22691 -11.01602 -10.96827 -10.77535 -10.32250 -9.81350 -9.34706 -8.01369 -5.37197 1.33984 1.40455 1.43640 1.50507 1.53242 1.57991 2.24336 2.49599 3.13627 3.28119 3.54095 3.61741 3.67554 3.73702 3.77930 3.82816 4.04991 4.16195 4.17917 4.26890 4.29418 4.31764 4.35595 4.37614 4.44689 4.55210 4.55639 4.59456 4.67325 4.70603 4.84476 4.87596 4.96729 5.02243 5.06342 5.11144 5.12040 5.15725 5.20255 5.24989 5.26028 5.30508 5.36392 5.40460 5.44850 5.56110 5.77786 6.21548 6.30581 6.40695 6.85517 7.07166 7.11836 7.80304 7.99422 9.19462 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.002246 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.288638 B =12465.345743 C =13715.797412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.090 0.910 4 C 0.119 3.881 5 N -0.607 5.607 6 C 0.529 3.471 7 O -0.567 6.567 8 C 0.105 3.895 9 N -0.711 5.711 10 C 0.515 3.485 11 O -0.581 6.581 12 C -0.097 4.097 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.099 4.099 18 C 0.077 3.923 19 C 0.173 3.827 20 H 0.066 0.934 21 N -0.734 5.734 22 C -0.231 4.231 23 H 0.060 0.940 24 C -0.060 4.060 25 N -0.982 5.982 26 Si 0.951 3.049 27 H -0.281 1.281 28 H -0.301 1.301 29 H -0.245 1.245 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.370 0.630 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.953 -8.194 25.831 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.109 0.891 4 C -0.003 4.003 5 N -0.339 5.339 6 C 0.318 3.682 7 O -0.447 6.447 8 C -0.022 4.022 9 N -0.366 5.366 10 C 0.303 3.697 11 O -0.460 6.460 12 C -0.118 4.118 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.137 4.137 18 C -0.048 4.048 19 C 0.063 3.937 20 H 0.084 0.916 21 N -0.376 5.376 22 C -0.362 4.362 23 H 0.078 0.922 24 C -0.252 4.252 25 N -0.632 5.632 26 Si 0.779 3.221 27 H -0.207 1.207 28 H -0.228 1.228 29 H -0.169 1.169 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.256 0.744 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.204 0.796 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.108 -8.446 25.512 28.375 hybrid contribution -0.039 1.137 -0.748 1.362 sum 9.069 -7.309 24.764 27.366 Atomic orbital electron populations 1.21653 0.92574 1.02331 1.02428 1.22493 0.97611 0.99568 0.92881 0.89121 1.22063 0.86945 0.94604 0.96712 1.48451 1.29917 1.43596 1.11960 1.20165 0.83578 0.78856 0.85649 1.90654 1.71767 1.65334 1.16962 1.20972 0.93527 0.95527 0.92196 1.45751 1.30511 1.45492 1.14867 1.21382 0.79184 0.79556 0.89593 1.90716 1.64706 1.66596 1.23975 1.21388 0.98658 0.97494 0.94232 1.21553 1.01041 0.97553 0.94570 1.21526 0.97647 0.98906 0.97080 1.21584 0.97764 0.98900 0.97740 1.21541 1.00539 0.97708 0.95458 1.21336 0.95780 0.98611 0.98019 1.23325 1.01197 1.01376 0.78911 1.21484 0.92867 0.93567 0.85779 0.91577 1.42530 1.88082 1.05658 1.01306 1.18989 1.40690 0.93341 0.83168 0.92216 1.25486 1.02479 1.02560 0.94693 1.69881 1.58893 1.36324 0.98067 0.85472 0.78106 0.80798 0.77760 1.20694 1.22802 1.16915 0.90394 0.92995 0.92462 0.90390 0.90622 0.88508 0.88308 0.74354 0.86409 0.92426 0.90578 0.90582 0.90687 0.90589 0.92561 0.90790 0.91279 0.92556 0.92914 0.90894 0.90644 0.79624 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.14 71.98 0.66 -2.33 16 2 C -0.11 -2.63 3.19 -9.60 -0.03 -2.66 16 3 H 0.09 2.17 8.00 -2.39 -0.02 2.15 16 4 C 0.12 2.78 6.45 86.73 0.56 3.34 16 5 N -0.61 -15.93 3.34 -810.97 -2.71 -18.63 16 6 C 0.53 14.06 7.92 87.66 0.69 14.75 16 7 O -0.57 -16.81 15.99 -3.06 -0.05 -16.86 16 8 C 0.11 2.61 5.17 85.63 0.44 3.05 16 9 N -0.71 -15.80 5.42 -466.80 -2.53 -18.33 16 10 C 0.51 12.30 7.15 87.66 0.63 12.93 16 11 O -0.58 -18.91 15.98 -3.04 -0.05 -18.96 16 12 C -0.10 -1.57 2.53 -11.54 -0.03 -1.60 16 13 C -0.11 -1.43 5.10 30.60 0.16 -1.27 16 14 C -0.11 -1.08 5.92 30.60 0.18 -0.90 16 15 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 16 C -0.11 -1.34 5.92 30.59 0.18 -1.16 16 17 C -0.10 -1.72 4.49 30.60 0.14 -1.58 16 18 C 0.08 2.28 6.41 86.79 0.56 2.83 16 19 C 0.17 5.67 3.17 46.38 0.15 5.81 16 20 H 0.07 2.34 7.99 -2.39 -0.02 2.32 16 21 N -0.73 -30.33 5.05 -316.38 -1.60 -31.93 16 22 C -0.23 -12.20 10.44 84.03 0.88 -11.32 16 23 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 24 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 25 N -0.98 -61.06 13.97 21.65 0.30 -60.75 16 26 Si 0.95 43.03 27.74 68.60 1.90 44.93 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 29 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.71 7.82 -2.39 -0.02 1.70 16 35 H 0.10 2.50 7.86 -2.38 -0.02 2.48 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.42 8.15 6.86 -92.70 -0.64 7.51 16 38 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.90 7.56 -2.39 -0.02 0.88 16 41 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 48 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 49 H 0.07 2.22 7.50 -2.39 -0.02 2.21 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.37 14.60 5.62 -92.71 -0.52 14.08 16 52 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -69.71 408.42 0.77 -68.94 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.31 Total: 35.68 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 5.81 Total: 15.92 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -6.53 Total: -129.64 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.10 Total: -35.82 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.90 Total: 44.93 kcal Total: -69.71 0.77 -68.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755121309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.554 kcal (2) G-P(sol) polarization free energy of solvation -69.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds