Wall clock time and date at job start Tue Mar 31 2020 20:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47247 * 2 1 4 4 C 1.50704 * 109.46941 * 119.99870 * 2 1 3 5 5 H 1.08000 * 120.00406 * 120.00153 * 4 2 1 6 6 C 1.37884 * 119.99768 * 300.00137 * 4 2 1 7 7 N 1.31516 * 119.99998 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99938 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46633 * 89.99738 * 8 6 4 10 10 H 1.48493 * 109.47291 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.47126 * 329.99968 * 8 6 4 12 12 N 1.46499 * 109.47150 * 239.99312 * 2 1 3 13 13 C 1.34776 * 119.99764 * 85.00598 * 12 2 1 14 14 O 1.21280 * 119.99835 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00260 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.49450 * 299.93477 * 15 13 12 17 17 C 1.53037 * 109.52496 * 179.84990 * 15 13 12 18 18 C 1.53044 * 109.53688 * 178.66575 * 17 15 13 19 19 C 1.52761 * 109.38174 * 61.24446 * 18 17 15 20 20 N 1.46923 * 109.00474 * 305.58430 * 19 18 17 21 21 C 1.34778 * 120.63278 * 233.58362 * 20 19 18 22 22 O 1.21580 * 120.00319 * 184.74724 * 21 20 19 23 23 N 1.34784 * 119.99829 * 4.74666 * 21 20 19 24 24 C 1.46498 * 120.00143 * 174.92171 * 23 21 20 25 25 C 1.54264 * 110.03052 * 272.91031 * 24 23 21 26 26 C 1.54967 * 104.15736 * 217.13262 * 25 24 23 27 27 C 1.54884 * 102.77515 * 37.89104 * 26 25 24 28 28 C 1.53869 * 110.03163 * 155.69057 * 24 23 21 29 29 C 1.46928 * 118.73867 * 53.31612 * 20 19 18 30 30 H 1.08999 * 109.47484 * 300.00075 * 1 2 3 31 31 H 1.09003 * 109.46775 * 60.00695 * 1 2 3 32 32 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00088 * 180.02562 * 7 6 4 34 34 H 0.96996 * 120.00576 * 264.99849 * 12 2 1 35 35 H 1.08998 * 109.46189 * 298.68884 * 17 15 13 36 36 H 1.09004 * 109.45678 * 58.65009 * 17 15 13 37 37 H 1.09002 * 109.49736 * 181.32020 * 18 17 15 38 38 H 1.08995 * 109.49807 * 301.38293 * 18 17 15 39 39 H 1.09004 * 109.50630 * 185.70815 * 19 18 17 40 40 H 1.08996 * 109.43101 * 65.42037 * 19 18 17 41 41 H 0.97005 * 119.99531 * 354.92429 * 23 21 20 42 42 H 1.09006 * 110.01225 * 34.30022 * 24 23 21 43 43 H 1.08997 * 110.48874 * 335.78490 * 25 24 23 44 44 H 1.09004 * 110.48788 * 98.42467 * 25 24 23 45 45 H 1.08992 * 110.72264 * 279.57534 * 26 25 24 46 46 H 1.09005 * 110.76077 * 156.22525 * 26 25 24 47 47 H 1.08998 * 110.48575 * 203.40413 * 27 26 25 48 48 H 1.08998 * 110.60251 * 80.81710 * 27 26 25 49 49 H 1.09003 * 110.02971 * 238.56394 * 28 24 23 50 50 H 1.08997 * 110.03803 * 359.95233 * 28 24 23 51 51 H 1.08999 * 109.58803 * 66.42840 * 29 20 19 52 52 H 1.09006 * 109.58532 * 186.70983 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.6303 -0.5438 4.4119 10 1 1.3443 -0.9488 5.1124 11 1 2.4879 -2.5652 3.7125 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8584 1.1582 -2.4117 15 6 2.6500 -0.7287 -3.5873 16 1 3.6499 -1.1198 -3.3985 17 6 2.6984 0.2526 -4.7606 18 6 3.2405 -0.4600 -6.0019 19 6 2.3083 -1.6119 -6.3728 20 7 2.1362 -2.4839 -5.2028 21 6 2.3741 -3.8075 -5.2919 22 8 2.1458 -4.5315 -4.3423 23 7 2.8651 -4.3286 -6.4339 24 6 3.2283 -5.7465 -6.4954 25 6 4.6824 -5.9406 -6.0182 26 6 5.2383 -7.0552 -6.9402 27 6 4.5947 -6.7204 -8.3086 28 6 3.1722 -6.2423 -7.9509 29 6 1.7057 -1.8846 -3.9323 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7085 1.1614 3.4843 34 1 2.2491 -1.6319 -1.1525 35 1 1.6944 0.6244 -4.9648 36 1 3.3507 1.0886 -4.5081 37 1 3.2968 0.2455 -6.8309 38 1 4.2349 -0.8530 -5.7905 39 1 2.7435 -2.1827 -7.1931 40 1 1.3407 -1.2121 -6.6759 41 1 2.9780 -3.7646 -7.2151 42 1 2.5503 -6.3325 -5.8748 43 1 5.2521 -5.0202 -6.1464 44 1 4.7026 -6.2608 -4.9764 45 1 4.9188 -8.0378 -6.5932 46 1 6.3253 -7.0003 -7.0007 47 1 4.5513 -7.6096 -8.9376 48 1 5.1492 -5.9268 -8.8094 49 1 2.4677 -7.0697 -8.0366 50 1 2.8740 -5.4283 -8.6115 51 1 0.6879 -1.5075 -4.0325 52 1 1.7410 -2.6360 -3.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073172812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:22 Heat of formation + Delta-G solvation = -82.348769 kcal Electronic energy + Delta-G solvation = -30203.405546 eV Core-core repulsion = 26201.902517 eV Total energy + Delta-G solvation = -4001.503029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76217 -39.34015 -38.23819 -36.91596 -34.78490 -34.05730 -32.58941 -32.45169 -31.30395 -29.09087 -28.68520 -27.85844 -25.30474 -25.15324 -24.08668 -21.98440 -21.08818 -20.84534 -20.48002 -19.82928 -19.19878 -18.32749 -17.00373 -16.80049 -15.81127 -15.72704 -15.52708 -15.37922 -15.15265 -14.87007 -14.56143 -14.34580 -13.96265 -13.73411 -13.52519 -13.34577 -13.27118 -13.01190 -12.66917 -12.34893 -12.28047 -11.84601 -11.64287 -11.54857 -11.50140 -11.41329 -11.21082 -11.06599 -11.00318 -10.97699 -10.93888 -10.93189 -10.69885 -10.58837 -10.27249 -10.19304 -10.15866 -9.28534 -9.03141 -8.99205 -8.62257 -8.50334 -7.87590 -6.08618 -4.17428 2.44465 3.09035 3.27977 3.34384 3.37002 3.40627 3.64179 4.08770 4.18730 4.28094 4.40173 4.50718 4.62935 4.72081 4.77516 5.03191 5.03590 5.10173 5.16421 5.17205 5.19789 5.23492 5.25637 5.29776 5.41141 5.43605 5.53329 5.60899 5.63689 5.69199 5.74009 5.77793 5.84026 5.89623 5.93719 5.98777 6.19354 6.30459 6.37276 6.41433 6.79098 6.86853 7.00498 7.19155 7.49020 7.60051 7.73732 7.78581 7.95324 8.18895 8.48881 8.70272 8.81739 9.14869 9.49956 10.97350 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002572 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.940797 B =10884.395032 C =12285.110470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.707 5.707 13 C 0.508 3.492 14 O -0.553 6.553 15 C -0.124 4.124 16 H 0.094 0.906 17 C -0.097 4.097 18 C -0.135 4.135 19 C 0.111 3.889 20 N -0.626 5.626 21 C 0.707 3.293 22 O -0.584 6.584 23 N -0.743 5.743 24 C 0.156 3.844 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.131 4.131 29 C 0.141 3.859 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.390 0.610 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.393 0.607 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.071 0.929 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -11.782 -25.300 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.354 5.354 13 C 0.292 3.708 14 O -0.432 6.432 15 C -0.147 4.147 16 H 0.112 0.888 17 C -0.135 4.135 18 C -0.173 4.173 19 C -0.012 4.012 20 N -0.364 5.364 21 C 0.409 3.591 22 O -0.462 6.462 23 N -0.401 5.401 24 C 0.051 3.949 25 C -0.175 4.175 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.169 4.169 29 C 0.018 3.982 30 H 0.108 0.892 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.222 0.778 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.230 0.770 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.915 -11.358 -24.439 27.591 hybrid contribution 0.521 -0.529 0.505 0.898 sum 6.436 -11.886 -23.934 27.487 Atomic orbital electron populations 1.22071 0.98429 0.99168 1.00844 1.18744 0.91061 0.93916 0.80076 0.93417 1.21238 1.32327 1.13175 0.90347 0.92061 1.24888 0.94813 0.94979 0.99050 1.69904 1.35916 1.22546 1.23820 0.86450 0.78551 0.79945 0.82188 1.20604 1.21088 1.19784 1.46596 1.64600 1.13614 1.10587 1.20159 0.78777 0.87400 0.84498 1.90650 1.51309 1.16071 1.85196 1.21750 1.01136 0.96759 0.95027 0.88783 1.21285 1.02770 0.97235 0.92246 1.21885 0.99246 0.97247 0.98935 1.21572 1.00176 0.92054 0.87400 1.47276 1.71887 1.05340 1.11861 1.15855 0.78021 0.81858 0.83409 1.90938 1.58767 1.58638 1.37816 1.45509 1.69975 1.11136 1.13476 1.21508 0.96234 0.80631 0.96513 1.22841 0.95516 0.99070 1.00096 1.22492 1.00108 0.98813 0.94848 1.22350 0.95346 1.01008 0.97441 1.22438 0.97957 1.01289 0.95234 1.21412 0.96806 0.94684 0.85344 0.89168 0.96695 0.95405 0.92629 0.77773 0.90944 0.90678 0.90376 0.91479 0.90850 0.91054 0.77011 0.88958 0.91234 0.90926 0.91215 0.91378 0.91456 0.91548 0.90665 0.91230 0.91035 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.66 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 5 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.71 -15.06 4.97 -54.93 -0.27 -15.33 16 13 C 0.51 10.06 7.12 -10.99 -0.08 9.98 16 14 O -0.55 -13.02 15.65 5.56 0.09 -12.93 16 15 C -0.12 -1.80 2.67 -91.65 -0.25 -2.05 16 16 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.10 -1.21 4.46 -26.69 -0.12 -1.33 16 18 C -0.13 -1.15 6.06 -26.83 -0.16 -1.31 16 19 C 0.11 0.90 6.40 -3.93 -0.03 0.87 16 20 N -0.63 -7.28 2.98 -178.76 -0.53 -7.82 16 21 C 0.71 9.19 8.29 -86.91 -0.72 8.47 16 22 O -0.58 -10.08 15.41 5.30 0.08 -10.00 16 23 N -0.74 -6.78 4.96 -57.58 -0.29 -7.07 16 24 C 0.16 1.34 3.27 -66.82 -0.22 1.12 16 25 C -0.14 -1.14 6.54 -25.03 -0.16 -1.30 16 26 C -0.12 -0.77 6.91 -24.70 -0.17 -0.94 16 27 C -0.12 -0.64 6.83 -25.07 -0.17 -0.81 16 28 C -0.13 -0.76 6.57 -25.62 -0.17 -0.93 16 29 C 0.14 1.96 5.56 -3.71 -0.02 1.94 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.39 7.51 8.08 -40.82 -0.33 7.18 16 35 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 36 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.40 5.57 -51.93 -0.29 0.11 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.39 2.54 5.77 -40.82 -0.24 2.31 16 42 H 0.09 1.00 7.52 -51.93 -0.39 0.61 16 43 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.34 7.61 -51.93 -0.40 -0.05 16 51 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.10 1.56 6.63 -51.93 -0.34 1.21 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -33.30 403.65 -10.71 -44.02 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.99 Total: 7.63 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.49 Total: 3.97 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.46 Total: -54.87 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.17 Total: -22.94 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.30 -10.71 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073172812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.331 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds