Wall clock time and date at job start Tue Mar 31 2020 20:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47247 * 2 1 4 4 C 1.50704 * 109.46941 * 119.99870 * 2 1 3 5 5 H 1.08000 * 120.00406 * 120.00153 * 4 2 1 6 6 C 1.37884 * 119.99768 * 300.00137 * 4 2 1 7 7 N 1.31516 * 119.99998 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99938 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46633 * 89.99738 * 8 6 4 10 10 H 1.48493 * 109.47291 * 209.99770 * 8 6 4 11 11 H 1.48498 * 109.47126 * 329.99968 * 8 6 4 12 12 N 1.46499 * 109.47150 * 239.99312 * 2 1 3 13 13 C 1.34776 * 119.99764 * 85.00598 * 12 2 1 14 14 O 1.21280 * 119.99835 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00260 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.49450 * 299.93477 * 15 13 12 17 17 C 1.53037 * 109.52496 * 179.84990 * 15 13 12 18 18 C 1.53044 * 109.53688 * 178.66575 * 17 15 13 19 19 C 1.52761 * 109.38174 * 61.24446 * 18 17 15 20 20 N 1.46923 * 109.00474 * 305.58430 * 19 18 17 21 21 C 1.34778 * 120.63278 * 233.58362 * 20 19 18 22 22 O 1.21580 * 120.00319 * 184.74724 * 21 20 19 23 23 N 1.34784 * 119.99829 * 4.74666 * 21 20 19 24 24 C 1.46498 * 120.00143 * 174.92171 * 23 21 20 25 25 C 1.54264 * 110.03052 * 272.91031 * 24 23 21 26 26 C 1.54967 * 104.15736 * 217.13262 * 25 24 23 27 27 C 1.54884 * 102.77515 * 37.89104 * 26 25 24 28 28 C 1.53869 * 110.03163 * 155.69057 * 24 23 21 29 29 C 1.46928 * 118.73867 * 53.31612 * 20 19 18 30 30 H 1.08999 * 109.47484 * 300.00075 * 1 2 3 31 31 H 1.09003 * 109.46775 * 60.00695 * 1 2 3 32 32 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00088 * 180.02562 * 7 6 4 34 34 H 0.96996 * 120.00576 * 264.99849 * 12 2 1 35 35 H 1.08998 * 109.46189 * 298.68884 * 17 15 13 36 36 H 1.09004 * 109.45678 * 58.65009 * 17 15 13 37 37 H 1.09002 * 109.49736 * 181.32020 * 18 17 15 38 38 H 1.08995 * 109.49807 * 301.38293 * 18 17 15 39 39 H 1.09004 * 109.50630 * 185.70815 * 19 18 17 40 40 H 1.08996 * 109.43101 * 65.42037 * 19 18 17 41 41 H 0.97005 * 119.99531 * 354.92429 * 23 21 20 42 42 H 1.09006 * 110.01225 * 34.30022 * 24 23 21 43 43 H 1.08997 * 110.48874 * 335.78490 * 25 24 23 44 44 H 1.09004 * 110.48788 * 98.42467 * 25 24 23 45 45 H 1.08992 * 110.72264 * 279.57534 * 26 25 24 46 46 H 1.09005 * 110.76077 * 156.22525 * 26 25 24 47 47 H 1.08998 * 110.48575 * 203.40413 * 27 26 25 48 48 H 1.08998 * 110.60251 * 80.81710 * 27 26 25 49 49 H 1.09003 * 110.02971 * 238.56394 * 28 24 23 50 50 H 1.08997 * 110.03803 * 359.95233 * 28 24 23 51 51 H 1.08999 * 109.58803 * 66.42840 * 29 20 19 52 52 H 1.09006 * 109.58532 * 186.70983 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9426 0.8297 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.6303 -0.5438 4.4119 10 1 1.3443 -0.9488 5.1124 11 1 2.4879 -2.5652 3.7125 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8584 1.1582 -2.4117 15 6 2.6500 -0.7287 -3.5873 16 1 3.6499 -1.1198 -3.3985 17 6 2.6984 0.2526 -4.7606 18 6 3.2405 -0.4600 -6.0019 19 6 2.3083 -1.6119 -6.3728 20 7 2.1362 -2.4839 -5.2028 21 6 2.3741 -3.8075 -5.2919 22 8 2.1458 -4.5315 -4.3423 23 7 2.8651 -4.3286 -6.4339 24 6 3.2283 -5.7465 -6.4954 25 6 4.6824 -5.9406 -6.0182 26 6 5.2383 -7.0552 -6.9402 27 6 4.5947 -6.7204 -8.3086 28 6 3.1722 -6.2423 -7.9509 29 6 1.7057 -1.8846 -3.9323 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7085 1.1614 3.4843 34 1 2.2491 -1.6319 -1.1525 35 1 1.6944 0.6244 -4.9648 36 1 3.3507 1.0886 -4.5081 37 1 3.2968 0.2455 -6.8309 38 1 4.2349 -0.8530 -5.7905 39 1 2.7435 -2.1827 -7.1931 40 1 1.3407 -1.2121 -6.6759 41 1 2.9780 -3.7646 -7.2151 42 1 2.5503 -6.3325 -5.8748 43 1 5.2521 -5.0202 -6.1464 44 1 4.7026 -6.2608 -4.9764 45 1 4.9188 -8.0378 -6.5932 46 1 6.3253 -7.0003 -7.0007 47 1 4.5513 -7.6096 -8.9376 48 1 5.1492 -5.9268 -8.8094 49 1 2.4677 -7.0697 -8.0366 50 1 2.8740 -5.4283 -8.6115 51 1 0.6879 -1.5075 -4.0325 52 1 1.7410 -2.6360 -3.1434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073172812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:21 Heat of formation + Delta-G solvation = -104.140716 kcal Electronic energy + Delta-G solvation = -30204.350515 eV Core-core repulsion = 26201.902517 eV Total energy + Delta-G solvation = -4002.447998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.77607 -40.73546 -39.10338 -37.98227 -36.71939 -35.00037 -34.36182 -33.54537 -32.48725 -30.53193 -29.61456 -28.55155 -27.36603 -26.17370 -25.28371 -23.27269 -22.20626 -21.54667 -21.35558 -21.09433 -20.58917 -19.35100 -18.65946 -17.63320 -17.44332 -17.19729 -16.65670 -16.38635 -16.21044 -16.06290 -15.87621 -15.33550 -15.07035 -14.83561 -14.75049 -14.40589 -14.30747 -14.21396 -14.07946 -13.84925 -13.50997 -13.02225 -12.98723 -12.88352 -12.77652 -12.49371 -12.44453 -12.28827 -12.16056 -12.01701 -11.98766 -11.96873 -11.91103 -11.70152 -11.62356 -11.44736 -11.21856 -11.13112 -10.72514 -10.58089 -10.18400 -9.78253 -9.54076 -8.19768 -6.37050 1.42417 1.42990 1.46924 1.54151 1.81515 2.11308 2.33501 2.59288 2.90378 3.10185 3.62067 3.67629 3.73891 3.74958 3.83525 4.01948 4.04309 4.11505 4.27173 4.46011 4.49815 4.52257 4.57712 4.60660 4.67305 4.71926 4.73436 4.76444 4.81241 4.89682 4.90526 4.93936 5.02048 5.07499 5.08567 5.17809 5.20078 5.26056 5.31881 5.39364 5.39642 5.44637 5.49067 5.58683 5.66621 5.67726 5.87312 5.92677 6.08155 6.70122 6.91465 6.95887 7.29483 7.49556 7.54244 8.86464 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.002572 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.940797 B =10884.395032 C =12285.110470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.068 0.932 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.264 1.264 12 N -0.706 5.706 13 C 0.505 3.495 14 O -0.592 6.592 15 C -0.107 4.107 16 H 0.104 0.896 17 C -0.096 4.096 18 C -0.123 4.123 19 C 0.106 3.894 20 N -0.623 5.623 21 C 0.701 3.299 22 O -0.634 6.634 23 N -0.724 5.724 24 C 0.152 3.848 25 C -0.136 4.136 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.123 4.123 29 C 0.148 3.852 30 H 0.068 0.932 31 H 0.014 0.986 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.409 0.591 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.067 0.933 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 -13.208 -28.125 32.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.188 1.188 12 N -0.354 5.354 13 C 0.292 3.708 14 O -0.474 6.474 15 C -0.129 4.129 16 H 0.122 0.878 17 C -0.135 4.135 18 C -0.161 4.161 19 C -0.015 4.015 20 N -0.360 5.360 21 C 0.403 3.597 22 O -0.515 6.515 23 N -0.383 5.383 24 C 0.047 3.953 25 C -0.175 4.175 26 C -0.160 4.160 27 C -0.155 4.155 28 C -0.161 4.161 29 C 0.024 3.976 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.249 0.751 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.105 0.895 51 H 0.085 0.915 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.248 -12.793 -27.349 31.051 hybrid contribution 0.106 -0.039 1.363 1.368 sum 7.354 -12.833 -25.986 29.900 Atomic orbital electron populations 1.21885 0.98202 0.99332 0.99708 1.18351 0.91197 0.91898 0.81886 0.98104 1.21536 1.32650 1.13501 0.91027 0.91363 1.25784 0.94842 0.95614 1.02234 1.70041 1.36821 1.23855 1.24648 0.85355 0.77926 0.79043 0.78092 1.20160 1.20646 1.18791 1.46411 1.64891 1.14055 1.10080 1.21071 0.77428 0.87018 0.85317 1.90626 1.52796 1.18030 1.85899 1.21657 1.01192 0.97037 0.93053 0.87810 1.21311 1.02391 0.96659 0.93099 1.21844 0.99074 0.97537 0.97650 1.21892 1.01140 0.91796 0.86717 1.47235 1.71408 1.05378 1.11949 1.16082 0.77975 0.81916 0.83736 1.90908 1.60825 1.59964 1.39838 1.45363 1.68588 1.11544 1.12761 1.21585 0.95575 0.79906 0.98235 1.22797 0.95628 0.99922 0.99179 1.22487 1.00604 0.97811 0.95090 1.22343 0.94561 1.01919 0.96693 1.22404 0.98751 1.01912 0.93073 1.21124 0.96415 0.93729 0.86354 0.91366 0.96659 0.94404 0.92464 0.76478 0.91801 0.91949 0.87302 0.91015 0.87367 0.89909 0.75054 0.91830 0.91190 0.93551 0.91367 0.90620 0.90199 0.90469 0.90303 0.89499 0.91455 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.96 9.26 71.98 0.67 -6.30 16 2 C 0.27 14.57 2.56 44.25 0.11 14.68 16 3 H 0.00 0.07 7.58 -2.39 -0.02 0.05 16 4 C -0.55 -30.36 8.73 25.60 0.22 -30.14 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 0.86 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 8 Si 0.97 43.53 29.54 68.60 2.03 45.55 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 12 N -0.71 -31.09 4.97 -446.10 -2.22 -33.31 16 13 C 0.51 20.60 7.12 87.66 0.62 21.23 16 14 O -0.59 -28.96 15.65 -3.03 -0.05 -29.00 16 15 C -0.11 -3.08 2.67 -11.46 -0.03 -3.11 16 16 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 17 C -0.10 -2.27 4.46 30.62 0.14 -2.14 16 18 C -0.12 -1.67 6.06 30.53 0.19 -1.49 16 19 C 0.11 1.34 6.40 86.22 0.55 1.89 16 20 N -0.62 -13.50 2.98 -837.74 -2.49 -16.00 16 21 C 0.70 17.57 8.29 179.05 1.48 19.06 16 22 O -0.63 -22.37 15.41 -3.97 -0.06 -22.43 16 23 N -0.72 -11.71 4.96 -454.35 -2.25 -13.96 16 24 C 0.15 2.44 3.27 45.71 0.15 2.58 16 25 C -0.14 -2.17 6.54 31.70 0.21 -1.97 16 26 C -0.12 -1.29 6.91 31.91 0.22 -1.07 16 27 C -0.12 -0.83 6.83 31.67 0.22 -0.61 16 28 C -0.12 -1.08 6.57 31.32 0.21 -0.87 16 29 C 0.15 4.10 5.56 86.36 0.48 4.58 16 30 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 31 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.40 15.85 8.08 -92.71 -0.75 15.10 16 35 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 36 H 0.06 1.64 8.07 -2.39 -0.02 1.62 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.63 5.57 -2.39 -0.01 0.62 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.41 3.73 5.77 -92.70 -0.53 3.19 16 42 H 0.06 1.41 7.52 -2.38 -0.02 1.39 16 43 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 44 H 0.05 0.96 8.14 -2.38 -0.02 0.95 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.09 0.49 7.61 -2.39 -0.02 0.47 16 51 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.08 2.55 6.63 -2.38 -0.02 2.54 16 Total: -1.00 -76.45 403.65 0.71 -75.74 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: -0.36 Total: 29.18 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 5.88 Total: 17.63 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -6.72 Total: -116.67 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.11 Total: -51.44 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -76.45 0.71 -75.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073172812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.403 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds