Wall clock time and date at job start Tue Mar 31 2020 20:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47158 * 2 1 4 4 C 1.50703 * 109.47212 * 120.00064 * 2 1 3 5 5 H 1.08002 * 119.99866 * 120.00400 * 4 2 1 6 6 C 1.37871 * 119.99957 * 299.99720 * 4 2 1 7 7 N 1.31514 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00000 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47453 * 90.00243 * 8 6 4 10 10 H 1.48500 * 109.46869 * 210.00055 * 8 6 4 11 11 H 1.48499 * 109.47066 * 330.00054 * 8 6 4 12 12 N 1.46500 * 109.47096 * 239.99734 * 2 1 3 13 13 C 1.46499 * 120.00405 * 304.30620 * 12 2 1 14 14 C 1.34782 * 119.99750 * 124.30526 * 12 2 1 15 15 O 1.21281 * 120.00071 * 174.11225 * 14 12 2 16 16 C 1.50701 * 119.99985 * 354.10599 * 14 12 2 17 17 C 1.53040 * 109.45827 * 198.50280 * 16 14 12 18 18 C 1.53192 * 109.31422 * 178.61703 * 17 16 14 19 19 N 1.46926 * 108.77842 * 54.62931 * 18 17 16 20 20 C 1.34775 * 120.63555 * 126.36794 * 19 18 17 21 21 O 1.21587 * 119.99318 * 11.17350 * 20 19 18 22 22 N 1.34770 * 120.00397 * 191.17074 * 20 19 18 23 23 C 1.47023 * 125.64831 * 354.19423 * 22 20 19 24 24 C 1.54319 * 107.26871 * 178.89327 * 23 22 20 25 25 C 1.55155 * 102.94645 * 337.80669 * 24 23 22 26 26 C 1.47422 * 125.64942 * 174.13833 * 22 20 19 27 27 C 1.46931 * 118.73821 * 306.64924 * 19 18 17 28 28 C 1.52763 * 109.00857 * 53.30444 * 27 19 18 29 29 H 1.09002 * 109.46790 * 299.99598 * 1 2 3 30 30 H 1.08996 * 109.47238 * 60.00350 * 1 2 3 31 31 H 1.09002 * 109.47059 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99672 * 179.97438 * 7 6 4 33 33 H 1.08989 * 109.46947 * 274.96044 * 13 12 2 34 34 H 1.09004 * 109.46786 * 34.95936 * 13 12 2 35 35 H 1.09005 * 109.47055 * 154.95750 * 13 12 2 36 36 H 1.08999 * 109.45882 * 318.47244 * 16 14 12 37 37 H 1.09002 * 109.50285 * 58.66482 * 17 16 14 38 38 H 1.09003 * 109.49873 * 298.56261 * 17 16 14 39 39 H 1.09004 * 109.58314 * 294.84544 * 18 17 16 40 40 H 1.08990 * 109.59012 * 174.42036 * 18 17 16 41 41 H 1.08999 * 109.88236 * 59.47578 * 23 22 20 42 42 H 1.08998 * 109.88272 * 298.31007 * 23 22 20 43 43 H 1.08994 * 110.72417 * 96.17234 * 24 23 22 44 44 H 1.09007 * 110.72050 * 219.44249 * 24 23 22 45 45 H 1.09003 * 111.00762 * 153.57971 * 25 24 23 46 46 H 1.09003 * 111.00728 * 277.43213 * 25 24 23 47 47 H 1.09001 * 110.36983 * 85.33588 * 26 22 20 48 48 H 1.09002 * 110.45969 * 323.06423 * 26 22 20 49 49 H 1.08992 * 109.58784 * 173.14149 * 27 19 18 50 50 H 1.09002 * 109.58675 * 293.56754 * 27 19 18 51 51 H 1.08994 * 109.56811 * 185.55096 * 28 27 19 52 52 H 1.09002 * 109.38747 * 65.51420 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6033 8 14 2.3226 -1.1195 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3446 -0.9489 5.1122 11 1 2.4881 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.5884 -2.0628 -1.4767 14 6 2.8632 -0.0637 -2.0386 15 8 3.3513 -0.6686 -2.9695 16 6 3.2013 1.3891 -1.8238 17 6 3.7752 1.9754 -3.1157 18 6 4.0854 3.4606 -2.9041 19 7 4.9657 3.5981 -1.7358 20 6 6.1317 4.2674 -1.8294 21 8 6.3724 4.9337 -2.8175 22 7 7.0308 4.1982 -0.8279 23 6 6.8219 3.5335 0.4668 24 6 8.1267 3.6867 1.2763 25 6 9.1912 3.9373 0.1757 26 6 8.3872 4.7754 -0.8494 27 6 4.5535 2.9867 -0.4649 28 6 4.2354 1.5116 -0.7024 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7083 1.1608 3.4844 33 1 2.2298 -2.7614 -0.9396 34 1 0.5562 -2.1937 -1.1516 35 1 1.6591 -2.2539 -2.5475 36 1 2.2992 1.9347 -1.5468 37 1 3.0470 1.8668 -3.9195 38 1 4.6910 1.4466 -3.3798 39 1 3.1581 4.0062 -2.7292 40 1 4.5852 3.8589 -3.7870 41 1 6.6046 2.4769 0.3102 42 1 5.9977 4.0087 0.9987 43 1 8.0632 4.5391 1.9526 44 1 8.3488 2.7722 1.8265 45 1 10.0341 4.5053 0.5694 46 1 9.5265 2.9983 -0.2647 47 1 8.3591 5.8217 -0.5452 48 1 8.8254 4.6817 -1.8430 49 1 5.3620 3.0725 0.2610 50 1 3.6652 3.4929 -0.0870 51 1 3.8349 1.0727 0.2113 52 1 5.1467 0.9865 -0.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:03 Heat of formation + Delta-G solvation = -18.725096 kcal Electronic energy + Delta-G solvation = -31785.606716 eV Core-core repulsion = 27786.862617 eV Total energy + Delta-G solvation = -3998.744099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87210 -39.46995 -37.75456 -36.77275 -35.61905 -33.04913 -32.70613 -31.68877 -30.86379 -29.20084 -29.06475 -27.26413 -25.48106 -25.21816 -23.27472 -23.00558 -21.52137 -21.44185 -20.63129 -19.63084 -18.11738 -17.26956 -16.67683 -16.53045 -16.44303 -15.93813 -15.14142 -15.06512 -14.64449 -14.51187 -14.36960 -13.96264 -13.79233 -13.54656 -13.31590 -13.28187 -12.86628 -12.81699 -12.69047 -12.46451 -12.31511 -11.87128 -11.76991 -11.58503 -11.42173 -11.38420 -11.20522 -11.14509 -10.99515 -10.94960 -10.77113 -10.72910 -10.33528 -10.31499 -10.22654 -10.12488 -9.71040 -9.38263 -8.98171 -8.81859 -8.60661 -8.23752 -7.65920 -6.24999 -4.33759 2.58162 3.14561 3.23094 3.23559 3.26102 3.36575 3.75026 3.94958 4.25715 4.30071 4.42310 4.68582 4.94483 5.01813 5.04330 5.07737 5.14309 5.17259 5.31503 5.32950 5.47912 5.52609 5.55257 5.61594 5.64889 5.71430 5.74935 5.89977 5.93024 5.95306 5.98162 6.08516 6.14262 6.14966 6.22800 6.30484 6.39700 6.47148 6.53473 6.62330 6.68056 6.76090 6.88246 7.07419 7.15312 7.35870 7.60548 7.81131 7.96690 8.05159 8.40256 8.62963 8.70492 8.99214 9.35066 10.78878 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.004208 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.497621 B = 6652.791308 C = 8368.262700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.251 3.749 3 H 0.058 0.942 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.069 3.931 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.095 3.905 14 C 0.514 3.486 15 O -0.575 6.575 16 C -0.099 4.099 17 C -0.113 4.113 18 C 0.133 3.867 19 N -0.620 5.620 20 C 0.727 3.273 21 O -0.595 6.595 22 N -0.638 5.638 23 C 0.090 3.910 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.126 3.874 27 C 0.042 3.958 28 C -0.126 4.126 29 H 0.095 0.905 30 H 0.012 0.988 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.138 0.862 50 H 0.070 0.930 51 H 0.107 0.893 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 6.223 -1.209 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.151 3.849 3 H 0.076 0.924 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.049 4.049 14 C 0.302 3.698 15 O -0.457 6.457 16 C -0.120 4.120 17 C -0.152 4.152 18 C 0.010 3.990 19 N -0.356 5.356 20 C 0.431 3.569 21 O -0.474 6.474 22 N -0.377 5.377 23 C -0.032 4.032 24 C -0.174 4.174 25 C -0.172 4.172 26 C 0.003 3.997 27 C -0.079 4.079 28 C -0.165 4.165 29 H 0.113 0.887 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.155 0.845 50 H 0.088 0.912 51 H 0.125 0.875 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.552 6.392 -2.141 11.691 hybrid contribution -0.111 -0.678 1.142 1.333 sum 9.441 5.714 -0.999 11.081 Atomic orbital electron populations 1.22143 0.98213 0.99955 1.00907 1.19133 0.91451 0.93531 0.80819 0.92410 1.21338 1.31929 1.13268 0.90031 0.92130 1.24859 0.94747 0.94929 0.98878 1.69856 1.36007 1.22624 1.23979 0.86539 0.78640 0.80188 0.82370 1.20511 1.21116 1.19904 1.48249 1.44879 1.14322 1.24794 1.21365 0.99761 0.83674 1.00061 1.20470 0.78729 0.88921 0.81713 1.90585 1.53668 1.68162 1.33265 1.21184 1.00167 0.93812 0.96822 1.21762 1.02132 0.94601 0.96702 1.21504 0.93257 0.96091 0.88145 1.47203 1.19583 1.56507 1.12331 1.15390 0.79598 0.80060 0.81887 1.90883 1.78703 1.45682 1.32150 1.47519 1.15227 1.59410 1.15530 1.22422 0.97877 0.98315 0.84604 1.22751 0.93897 1.03199 0.97540 1.22806 0.97616 1.00808 0.96000 1.22027 0.80701 0.96731 1.00221 1.23438 1.03959 0.93623 0.86918 1.21879 0.98543 0.96079 0.99993 0.88656 0.96848 0.94731 0.92550 0.93546 0.91626 0.92291 0.88855 0.90639 0.90847 0.91682 0.89149 0.89857 0.90033 0.90382 0.89673 0.89776 0.90509 0.91816 0.90559 0.84548 0.91214 0.87455 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.84 37.16 0.33 -2.96 16 2 C 0.25 5.46 1.84 -69.08 -0.13 5.34 16 3 H 0.06 1.28 4.62 -51.93 -0.24 1.04 16 4 C -0.53 -12.56 7.97 -34.44 -0.27 -12.84 16 5 H 0.06 1.50 7.78 -52.49 -0.41 1.09 16 6 C 0.07 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -21.84 11.32 55.43 0.63 -21.21 16 8 Si 0.89 19.10 29.54 -169.99 -5.02 14.08 16 9 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 10 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.59 -12.20 2.75 -175.26 -0.48 -12.68 16 13 C 0.09 1.80 9.91 59.85 0.59 2.39 16 14 C 0.51 10.41 6.85 -10.98 -0.08 10.34 16 15 O -0.58 -12.96 15.61 5.56 0.09 -12.88 16 16 C -0.10 -1.68 1.62 -91.73 -0.15 -1.83 16 17 C -0.11 -1.77 4.78 -26.61 -0.13 -1.90 16 18 C 0.13 1.94 6.40 -3.71 -0.02 1.91 16 19 N -0.62 -9.31 2.98 -178.76 -0.53 -9.84 16 20 C 0.73 11.69 8.33 -86.93 -0.72 10.97 16 21 O -0.60 -11.40 16.14 5.29 0.09 -11.32 16 22 N -0.64 -8.18 3.33 -228.11 -0.76 -8.94 16 23 C 0.09 0.92 4.85 -3.07 -0.01 0.90 16 24 C -0.14 -1.03 6.95 -24.90 -0.17 -1.20 16 25 C -0.13 -1.01 7.09 -24.59 -0.17 -1.18 16 26 C 0.13 1.31 6.89 -2.53 -0.02 1.29 16 27 C 0.04 0.58 5.57 -3.93 -0.02 0.56 16 28 C -0.13 -2.04 4.87 -26.83 -0.13 -2.18 16 29 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.03 0.72 6.59 -51.93 -0.34 0.37 16 32 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.17 6.25 -51.93 -0.32 0.85 16 35 H 0.06 1.08 7.36 -51.93 -0.38 0.70 16 36 H 0.09 1.59 6.94 -51.93 -0.36 1.23 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.27 7.96 -51.93 -0.41 0.85 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.36 7.10 -51.93 -0.37 0.99 16 41 H 0.08 0.90 6.58 -51.93 -0.34 0.56 16 42 H 0.08 0.80 6.78 -51.93 -0.35 0.45 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 49 H 0.14 1.67 1.50 -112.18 -0.17 1.50 16 50 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.11 1.97 6.07 -51.93 -0.32 1.66 16 52 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -29.72 388.62 -9.88 -39.60 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.54 Total: 6.17 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: -1.21 Total: 11.16 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -1.15 Total: -52.67 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.17 Total: -24.19 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.72 -9.88 -39.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.879 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds