Wall clock time and date at job start Tue Mar 31 2020 20:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47158 * 2 1 4 4 C 1.50703 * 109.47212 * 120.00064 * 2 1 3 5 5 H 1.08002 * 119.99866 * 120.00400 * 4 2 1 6 6 C 1.37871 * 119.99957 * 299.99720 * 4 2 1 7 7 N 1.31514 * 119.99914 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00000 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47453 * 90.00243 * 8 6 4 10 10 H 1.48500 * 109.46869 * 210.00055 * 8 6 4 11 11 H 1.48499 * 109.47066 * 330.00054 * 8 6 4 12 12 N 1.46500 * 109.47096 * 239.99734 * 2 1 3 13 13 C 1.46499 * 120.00405 * 304.30620 * 12 2 1 14 14 C 1.34782 * 119.99750 * 124.30526 * 12 2 1 15 15 O 1.21281 * 120.00071 * 174.11225 * 14 12 2 16 16 C 1.50701 * 119.99985 * 354.10599 * 14 12 2 17 17 C 1.53040 * 109.45827 * 198.50280 * 16 14 12 18 18 C 1.53192 * 109.31422 * 178.61703 * 17 16 14 19 19 N 1.46926 * 108.77842 * 54.62931 * 18 17 16 20 20 C 1.34775 * 120.63555 * 126.36794 * 19 18 17 21 21 O 1.21587 * 119.99318 * 11.17350 * 20 19 18 22 22 N 1.34770 * 120.00397 * 191.17074 * 20 19 18 23 23 C 1.47023 * 125.64831 * 354.19423 * 22 20 19 24 24 C 1.54319 * 107.26871 * 178.89327 * 23 22 20 25 25 C 1.55155 * 102.94645 * 337.80669 * 24 23 22 26 26 C 1.47422 * 125.64942 * 174.13833 * 22 20 19 27 27 C 1.46931 * 118.73821 * 306.64924 * 19 18 17 28 28 C 1.52763 * 109.00857 * 53.30444 * 27 19 18 29 29 H 1.09002 * 109.46790 * 299.99598 * 1 2 3 30 30 H 1.08996 * 109.47238 * 60.00350 * 1 2 3 31 31 H 1.09002 * 109.47059 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99672 * 179.97438 * 7 6 4 33 33 H 1.08989 * 109.46947 * 274.96044 * 13 12 2 34 34 H 1.09004 * 109.46786 * 34.95936 * 13 12 2 35 35 H 1.09005 * 109.47055 * 154.95750 * 13 12 2 36 36 H 1.08999 * 109.45882 * 318.47244 * 16 14 12 37 37 H 1.09002 * 109.50285 * 58.66482 * 17 16 14 38 38 H 1.09003 * 109.49873 * 298.56261 * 17 16 14 39 39 H 1.09004 * 109.58314 * 294.84544 * 18 17 16 40 40 H 1.08990 * 109.59012 * 174.42036 * 18 17 16 41 41 H 1.08999 * 109.88236 * 59.47578 * 23 22 20 42 42 H 1.08998 * 109.88272 * 298.31007 * 23 22 20 43 43 H 1.08994 * 110.72417 * 96.17234 * 24 23 22 44 44 H 1.09007 * 110.72050 * 219.44249 * 24 23 22 45 45 H 1.09003 * 111.00762 * 153.57971 * 25 24 23 46 46 H 1.09003 * 111.00728 * 277.43213 * 25 24 23 47 47 H 1.09001 * 110.36983 * 85.33588 * 26 22 20 48 48 H 1.09002 * 110.45969 * 323.06423 * 26 22 20 49 49 H 1.08992 * 109.58784 * 173.14149 * 27 19 18 50 50 H 1.09002 * 109.58675 * 293.56754 * 27 19 18 51 51 H 1.08994 * 109.56811 * 185.55096 * 28 27 19 52 52 H 1.09002 * 109.38747 * 65.51420 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6033 8 14 2.3226 -1.1195 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3446 -0.9489 5.1122 11 1 2.4881 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.5884 -2.0628 -1.4767 14 6 2.8632 -0.0637 -2.0386 15 8 3.3513 -0.6686 -2.9695 16 6 3.2013 1.3891 -1.8238 17 6 3.7752 1.9754 -3.1157 18 6 4.0854 3.4606 -2.9041 19 7 4.9657 3.5981 -1.7358 20 6 6.1317 4.2674 -1.8294 21 8 6.3724 4.9337 -2.8175 22 7 7.0308 4.1982 -0.8279 23 6 6.8219 3.5335 0.4668 24 6 8.1267 3.6867 1.2763 25 6 9.1912 3.9373 0.1757 26 6 8.3872 4.7754 -0.8494 27 6 4.5535 2.9867 -0.4649 28 6 4.2354 1.5116 -0.7024 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7083 1.1608 3.4844 33 1 2.2298 -2.7614 -0.9396 34 1 0.5562 -2.1937 -1.1516 35 1 1.6591 -2.2539 -2.5475 36 1 2.2992 1.9347 -1.5468 37 1 3.0470 1.8668 -3.9195 38 1 4.6910 1.4466 -3.3798 39 1 3.1581 4.0062 -2.7292 40 1 4.5852 3.8589 -3.7870 41 1 6.6046 2.4769 0.3102 42 1 5.9977 4.0087 0.9987 43 1 8.0632 4.5391 1.9526 44 1 8.3488 2.7722 1.8265 45 1 10.0341 4.5053 0.5694 46 1 9.5265 2.9983 -0.2647 47 1 8.3591 5.8217 -0.5452 48 1 8.8254 4.6817 -1.8430 49 1 5.3620 3.0725 0.2610 50 1 3.6652 3.4929 -0.0870 51 1 3.8349 1.0727 0.2113 52 1 5.1467 0.9865 -0.9891 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:02 Heat of formation + Delta-G solvation = -35.016894 kcal Electronic energy + Delta-G solvation = -31786.313182 eV Core-core repulsion = 27786.862617 eV Total energy + Delta-G solvation = -3999.450565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04485 -40.96533 -38.78369 -38.09272 -37.34307 -34.51868 -34.28464 -32.80625 -31.89545 -30.94898 -29.95333 -28.70392 -27.24570 -26.57085 -24.47096 -24.13953 -23.08881 -22.33151 -21.78890 -20.82667 -19.69706 -18.50012 -18.18529 -18.04818 -17.61134 -17.18210 -16.78578 -16.29287 -16.13320 -16.02686 -15.55916 -15.11436 -14.88443 -14.79269 -14.63322 -14.53658 -14.34680 -14.02343 -13.84093 -13.53217 -13.45372 -13.43341 -13.18931 -13.06447 -12.86783 -12.82015 -12.65485 -12.46768 -12.37438 -12.16168 -12.11320 -12.05791 -11.87132 -11.67266 -11.58515 -11.43063 -11.17122 -10.89458 -10.51696 -10.40124 -10.00601 -9.37530 -9.32629 -8.08826 -6.22644 1.45537 1.50602 1.51081 1.56972 1.73483 2.02036 2.34433 2.51468 2.70261 3.19427 3.53359 3.58996 3.68941 3.75226 3.86206 4.02887 4.08704 4.17666 4.26023 4.31205 4.36277 4.45047 4.47312 4.54150 4.63882 4.67085 4.72058 4.78432 4.79708 4.82329 4.85799 4.92611 4.95158 4.98109 4.99188 5.00036 5.04819 5.13702 5.16910 5.24441 5.28046 5.36665 5.43859 5.57614 5.61793 5.79288 5.95667 6.02562 6.25218 6.68276 6.82764 6.88352 7.32572 7.42594 7.50211 8.93551 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.004208 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.497621 B = 6652.791308 C = 8368.262700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.038 3.962 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.597 5.597 13 C 0.094 3.906 14 C 0.509 3.491 15 O -0.600 6.600 16 C -0.094 4.094 17 C -0.101 4.101 18 C 0.136 3.864 19 N -0.621 5.621 20 C 0.718 3.282 21 O -0.633 6.633 22 N -0.639 5.639 23 C 0.079 3.921 24 C -0.127 4.127 25 C -0.123 4.123 26 C 0.117 3.883 27 C 0.048 3.952 28 C -0.115 4.115 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.266 0.734 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.159 0.841 50 H 0.071 0.929 51 H 0.088 0.912 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.146 6.713 0.258 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.073 0.927 4 C -0.574 4.574 5 H 0.065 0.935 6 C -0.164 4.164 7 N -0.541 5.541 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.326 5.326 13 C -0.049 4.049 14 C 0.298 3.702 15 O -0.483 6.483 16 C -0.116 4.116 17 C -0.140 4.140 18 C 0.013 3.987 19 N -0.357 5.357 20 C 0.421 3.579 21 O -0.515 6.515 22 N -0.377 5.377 23 C -0.042 4.042 24 C -0.165 4.165 25 C -0.161 4.161 26 C -0.005 4.005 27 C -0.073 4.073 28 C -0.154 4.154 29 H 0.095 0.905 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.129 0.871 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.176 0.824 50 H 0.090 0.910 51 H 0.106 0.894 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.333 6.871 -0.641 12.425 hybrid contribution -0.349 -0.868 0.674 1.153 sum 9.984 6.003 0.033 11.650 Atomic orbital electron populations 1.22014 0.97816 0.99911 1.00665 1.18979 0.91596 0.93218 0.80548 0.92725 1.21413 1.31948 1.12971 0.91113 0.93549 1.25348 0.94879 0.95420 1.00726 1.69929 1.36449 1.23274 1.24445 0.85768 0.78433 0.78897 0.79790 1.19668 1.21144 1.20535 1.48315 1.44890 1.14896 1.24543 1.21429 1.00232 0.82933 1.00341 1.20984 0.78067 0.90027 0.81106 1.90568 1.54480 1.69051 1.34245 1.21198 1.00650 0.91822 0.97881 1.21647 1.01242 0.95000 0.96116 1.21477 0.93830 0.95231 0.88119 1.47242 1.19556 1.56312 1.12614 1.15618 0.80067 0.79990 0.82187 1.90845 1.79485 1.47352 1.33852 1.47661 1.15422 1.58935 1.15642 1.22574 1.00076 0.97701 0.83849 1.22758 0.91869 1.04600 0.97258 1.22791 0.97921 1.00454 0.94931 1.22256 0.79900 0.97799 1.00545 1.23528 1.04948 0.91796 0.87017 1.21732 0.97627 0.97483 0.98513 0.90458 0.95407 0.94652 0.92469 0.93947 0.90583 0.91819 0.88466 0.89982 0.92716 0.90096 0.89700 0.90478 0.89280 0.88806 0.88315 0.87125 0.90825 0.91012 0.92060 0.82441 0.91031 0.89405 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.10 8.84 71.98 0.64 -5.47 16 2 C 0.26 11.08 1.84 44.25 0.08 11.16 16 3 H 0.06 2.40 4.62 -2.39 -0.01 2.39 16 4 C -0.54 -25.32 7.97 25.60 0.20 -25.12 16 5 H 0.05 2.29 7.78 -2.91 -0.02 2.27 16 6 C 0.04 1.77 5.30 84.65 0.45 2.22 16 7 N -0.90 -43.70 11.32 21.45 0.24 -43.45 16 8 Si 0.94 38.35 29.54 68.60 2.03 40.38 16 9 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 10 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 12 N -0.60 -24.38 2.75 -826.79 -2.28 -26.66 16 13 C 0.09 3.51 9.91 127.77 1.27 4.78 16 14 C 0.51 20.58 6.85 87.66 0.60 21.18 16 15 O -0.60 -27.11 15.61 -3.03 -0.05 -27.16 16 16 C -0.09 -3.20 1.62 -11.51 -0.02 -3.21 16 17 C -0.10 -3.15 4.78 30.67 0.15 -3.00 16 18 C 0.14 3.91 6.40 86.36 0.55 4.47 16 19 N -0.62 -18.35 2.98 -837.75 -2.50 -20.85 16 20 C 0.72 22.91 8.33 179.06 1.49 24.41 16 21 O -0.63 -24.53 16.14 -3.99 -0.06 -24.59 16 22 N -0.64 -15.75 3.33 -993.88 -3.31 -19.05 16 23 C 0.08 1.47 4.85 86.73 0.42 1.89 16 24 C -0.13 -1.53 6.95 31.78 0.22 -1.31 16 25 C -0.12 -1.52 7.09 31.98 0.23 -1.29 16 26 C 0.12 2.29 6.89 86.85 0.60 2.88 16 27 C 0.05 1.28 5.57 86.22 0.48 1.76 16 28 C -0.11 -3.68 4.87 30.53 0.15 -3.53 16 29 H 0.08 3.56 6.07 -2.39 -0.01 3.55 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.03 1.43 6.59 -2.39 -0.02 1.42 16 32 H 0.27 12.39 8.31 -92.70 -0.77 11.62 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 2.65 6.25 -2.39 -0.01 2.64 16 35 H 0.06 2.31 7.36 -2.38 -0.02 2.29 16 36 H 0.10 3.24 6.94 -2.39 -0.02 3.23 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.91 7.96 -2.39 -0.02 1.89 16 39 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.08 2.57 7.10 -2.39 -0.02 2.55 16 41 H 0.08 1.55 6.58 -2.39 -0.02 1.54 16 42 H 0.09 1.55 6.78 -2.39 -0.02 1.54 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 0.98 8.14 -2.38 -0.02 0.97 16 45 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 49 H 0.16 3.63 1.50 -58.98 -0.09 3.54 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.09 3.21 6.07 -2.39 -0.01 3.20 16 52 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.98 388.62 2.42 -60.56 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.83 Total: 29.02 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 7.50 Total: 31.80 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -7.83 Total: -110.02 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.11 Total: -51.75 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -62.98 2.42 -60.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.542 kcal (2) G-P(sol) polarization free energy of solvation -62.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds