Wall clock time and date at job start Tue Mar 31 2020 20:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.47543 * 2 1 4 4 C 1.50698 * 109.47354 * 239.99771 * 2 1 3 5 5 H 1.08008 * 120.00432 * 240.00206 * 4 2 1 6 6 C 1.37879 * 119.99914 * 59.99952 * 4 2 1 7 7 N 1.31510 * 120.00175 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99905 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46925 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.46816 * 120.00225 * 8 6 4 11 11 H 1.48499 * 109.47034 * 240.00363 * 8 6 4 12 12 N 1.46905 * 109.47213 * 119.99781 * 2 1 3 13 13 C 1.46907 * 110.99574 * 58.95251 * 12 2 1 14 14 C 1.46901 * 110.99804 * 295.00314 * 12 2 1 15 15 N 1.46467 * 109.46935 * 204.99671 * 14 12 2 16 16 C 1.33835 * 124.28075 * 90.02596 * 15 14 12 17 17 O 1.21498 * 123.90421 * 359.96700 * 16 15 14 18 18 N 1.35131 * 112.57345 * 180.08160 * 16 15 14 19 19 C 1.46637 * 105.79406 * 1.29471 * 18 16 15 20 20 C 1.53512 * 108.35572 * 239.21215 * 19 18 16 21 21 C 1.53317 * 109.05541 * 282.70659 * 20 19 18 22 22 C 1.51832 * 110.88157 * 68.22070 * 21 20 19 23 23 C 1.51660 * 115.34311 * 254.41187 * 22 21 20 24 24 C 1.51787 * 115.40872 * 0.80855 * 23 22 21 25 25 C 1.52836 * 111.55153 * 82.54897 * 24 23 22 26 26 C 1.51835 * 112.32883 * 119.49548 * 19 18 16 27 27 C 1.35092 * 124.15579 * 269.83018 * 15 14 12 28 28 O 1.21270 * 127.04086 * 358.48642 * 27 15 14 29 29 H 1.09000 * 109.47429 * 300.00443 * 1 2 3 30 30 H 1.09001 * 109.47190 * 60.00278 * 1 2 3 31 31 H 1.09004 * 109.47543 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00032 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47045 * 296.04844 * 13 12 2 34 34 H 1.08996 * 109.46851 * 56.04898 * 13 12 2 35 35 H 1.09000 * 109.46682 * 176.04940 * 13 12 2 36 36 H 1.09002 * 109.47401 * 84.99563 * 14 12 2 37 37 H 1.09001 * 109.46874 * 324.99576 * 14 12 2 38 38 H 0.96430 * 125.60403 * 181.26362 * 18 16 15 39 39 H 1.08769 * 109.22316 * 42.59640 * 20 19 18 40 40 H 1.08807 * 109.10731 * 162.99568 * 20 19 18 41 41 H 1.07838 * 111.16753 * 302.44129 * 21 20 19 42 42 H 1.10573 * 107.30930 * 186.07113 * 21 20 19 43 43 H 1.10468 * 108.19395 * 132.85519 * 22 21 20 44 44 H 1.09874 * 109.13647 * 18.22053 * 22 21 20 45 45 H 1.10492 * 108.37062 * 239.29005 * 23 22 21 46 46 H 1.09879 * 109.57280 * 124.44386 * 23 22 21 47 47 H 1.08606 * 111.44771 * 318.54903 * 24 23 22 48 48 H 1.10315 * 108.47942 * 201.21508 * 24 23 22 49 49 H 1.09512 * 108.90731 * 149.95907 * 25 24 23 50 50 H 1.08825 * 109.84924 * 31.28942 * 25 24 23 51 51 H 1.08696 * 111.15735 * 132.67312 * 26 19 18 52 52 H 1.10344 * 108.33665 * 249.72049 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3226 -1.1197 -4.0079 9 1 3.1475 -2.2865 -3.6036 10 1 1.1679 -1.5867 -4.8164 11 1 3.1474 -0.1859 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6486 0.0392 2.4181 15 7 2.5921 -0.2871 3.4898 16 6 3.7217 0.3888 3.7313 17 8 4.0880 1.3498 3.0844 18 7 4.4153 -0.1162 4.7753 19 6 3.6475 -1.2755 5.2411 20 6 3.2627 -1.0423 6.7088 21 6 4.4841 -1.3117 7.5955 22 6 5.5562 -0.2597 7.3739 23 6 6.7594 -0.7178 6.5723 24 6 6.7114 -2.1561 6.0899 25 6 5.8971 -2.2899 4.8035 26 6 4.4418 -2.5665 5.1533 27 6 2.4278 -1.3068 4.3606 28 8 1.4932 -2.0776 4.4148 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1612 -3.4845 33 1 0.4418 -2.0730 1.3347 34 1 1.8166 -2.5950 0.3319 35 1 1.9615 -2.5868 2.1059 36 1 0.6413 -0.2467 2.7212 37 1 1.6783 1.1110 2.2216 38 1 5.2440 0.2349 5.1212 39 1 2.9382 -0.0118 6.8346 40 1 2.4581 -1.7234 6.9786 41 1 4.8562 -2.3136 7.4518 42 1 4.1487 -1.2442 8.6469 43 1 5.9073 0.0884 8.3618 44 1 5.1052 0.6182 6.8911 45 1 7.6622 -0.5926 7.1970 46 1 6.9014 -0.0530 5.7090 47 1 6.3218 -2.8194 6.8567 48 1 7.7413 -2.4873 5.8744 49 1 6.2955 -3.1242 4.2165 50 1 5.9860 -1.3798 4.2135 51 1 4.3650 -3.1378 6.0748 52 1 4.0045 -3.1895 4.3545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103461061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:45 Heat of formation + Delta-G solvation = -43.363048 kcal Electronic energy + Delta-G solvation = -32200.782034 eV Core-core repulsion = 28200.969553 eV Total energy + Delta-G solvation = -3999.812481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.83260 -39.97635 -39.73044 -38.73446 -36.90240 -35.41595 -34.30300 -34.00142 -32.90166 -30.66482 -28.76118 -27.56634 -27.21916 -27.19703 -25.57504 -24.39511 -23.08417 -22.29678 -21.63119 -21.01654 -19.93987 -19.06356 -18.34545 -18.05865 -17.45705 -17.05510 -16.73482 -16.69809 -16.39515 -16.05620 -15.72129 -15.41514 -15.26186 -15.18352 -14.97160 -14.83051 -14.46864 -14.39469 -13.88352 -13.60490 -13.50825 -13.06493 -13.00366 -12.80892 -12.75473 -12.66696 -12.51067 -12.46718 -12.41823 -12.09792 -12.05701 -11.99880 -11.86442 -11.64390 -11.33519 -11.24503 -11.15960 -11.06875 -10.86238 -10.82510 -10.53138 -10.27142 -9.14133 -8.13804 -6.24904 0.54236 1.16255 1.40465 1.42268 1.54027 1.95784 2.16864 2.41489 2.91129 3.15563 3.28719 3.41126 3.58521 3.78419 3.88636 4.00473 4.07522 4.10911 4.17478 4.24533 4.33650 4.34663 4.47125 4.53366 4.63938 4.65962 4.70195 4.72710 4.80752 4.83630 4.85609 4.93211 4.98224 5.03076 5.06258 5.08823 5.15859 5.25894 5.28826 5.36789 5.40143 5.43763 5.50010 5.64433 5.68928 5.69917 5.81693 6.02319 6.13163 6.31958 6.38055 6.53429 6.85113 7.12024 7.43687 8.92903 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019047 B = 0.003207 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.656862 B = 8729.080032 C = 9068.081675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.224 3.776 3 H 0.007 0.993 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.556 5.556 13 C 0.049 3.951 14 C 0.287 3.713 15 N -0.570 5.570 16 C 0.694 3.306 17 O -0.580 6.580 18 N -0.696 5.696 19 C 0.133 3.867 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.112 4.112 27 C 0.530 3.470 28 O -0.486 6.486 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.446 0.554 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.123 0.877 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -6.981 25.258 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.117 3.883 3 H 0.025 0.975 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.208 1.208 12 N -0.281 5.281 13 C -0.099 4.099 14 C 0.075 3.925 15 N -0.316 5.316 16 C 0.395 3.605 17 O -0.456 6.456 18 N -0.366 5.366 19 C 0.043 3.957 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.164 4.164 23 C -0.161 4.161 24 C -0.151 4.151 25 C -0.161 4.161 26 C -0.150 4.150 27 C 0.319 3.681 28 O -0.357 6.357 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.298 0.702 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.141 0.859 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.362 -6.764 24.742 27.305 hybrid contribution -0.536 0.352 -1.436 1.572 sum 8.826 -6.412 23.306 25.733 Atomic orbital electron populations 1.22238 0.99343 0.99672 1.00513 1.19051 0.90519 0.92775 0.85981 0.97504 1.21320 1.30901 1.12536 0.90703 0.92587 1.25679 0.95305 0.95777 1.01797 1.70007 1.37689 1.23989 1.24115 0.85449 0.78117 0.78533 0.79164 1.19353 1.20313 1.20795 1.61847 1.60900 1.03242 1.02088 1.22155 0.97256 0.89338 1.01158 1.21837 0.88944 0.98739 0.82949 1.46760 1.23144 1.30976 1.30713 1.16393 0.80374 0.82218 0.81526 1.90967 1.71503 1.29448 1.53695 1.46087 1.27167 1.30425 1.32962 1.21063 0.88573 0.89546 0.96561 1.22214 1.00515 1.03447 0.88685 1.21578 0.93394 1.00885 0.99599 1.21447 0.95548 0.98173 1.01264 1.21410 0.98691 0.96284 0.99728 1.21454 1.00429 0.96698 0.96469 1.21567 0.93319 1.02519 0.98714 1.21774 0.95386 0.92771 1.05049 1.21137 0.87862 0.78501 0.80613 1.90765 1.34382 1.39809 1.70776 0.95384 0.91454 0.94439 0.92822 0.95662 0.91844 0.92814 0.90629 0.89556 0.70229 0.90819 0.88832 0.88468 0.90124 0.90773 0.92991 0.90855 0.93495 0.89171 0.91747 0.91263 0.92469 0.85855 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.34 71.98 0.60 -7.16 16 2 C 0.22 11.77 2.27 44.16 0.10 11.87 16 3 H 0.01 0.42 7.93 -2.38 -0.02 0.40 16 4 C -0.52 -29.16 7.88 25.60 0.20 -28.96 16 5 H 0.06 3.18 6.77 -2.91 -0.02 3.16 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.50 11.32 21.45 0.24 -53.26 16 8 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.56 -25.37 4.84 -913.88 -4.42 -29.79 16 13 C 0.05 2.04 8.64 127.69 1.10 3.14 16 14 C 0.29 11.42 4.56 170.82 0.78 12.20 16 15 N -0.57 -19.61 2.83 -783.96 -2.22 -21.82 16 16 C 0.69 23.69 8.62 179.24 1.55 25.23 16 17 O -0.58 -25.00 17.50 -3.71 -0.06 -25.07 16 18 N -0.70 -16.08 3.17 -442.86 -1.40 -17.48 16 19 C 0.13 2.68 0.93 2.55 0.00 2.68 16 20 C -0.11 -1.50 4.72 30.87 0.15 -1.36 16 21 C -0.12 -0.95 4.95 30.32 0.15 -0.80 16 22 C -0.13 -1.14 4.87 29.77 0.15 -1.00 16 23 C -0.12 -1.18 4.92 29.76 0.15 -1.04 16 24 C -0.11 -1.08 5.11 30.14 0.15 -0.93 16 25 C -0.12 -1.89 5.43 30.28 0.16 -1.73 16 26 C -0.11 -1.82 4.76 29.95 0.14 -1.68 16 27 C 0.53 15.45 5.93 87.54 0.52 15.97 16 28 O -0.49 -15.77 16.73 -3.00 -0.05 -15.82 16 29 H 0.03 1.20 7.13 -2.39 -0.02 1.19 16 30 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 31 H 0.04 1.76 6.47 -2.38 -0.02 1.74 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.02 1.02 6.43 -2.39 -0.02 1.01 16 34 H 0.06 2.80 6.41 -2.39 -0.02 2.79 16 35 H 0.05 2.06 6.26 -2.39 -0.01 2.05 16 36 H 0.08 2.84 7.36 -2.39 -0.02 2.82 16 37 H 0.09 3.65 7.45 -2.39 -0.02 3.64 16 38 H 0.45 8.64 3.83 -93.13 -0.36 8.29 16 39 H 0.07 1.08 7.96 -2.51 -0.02 1.06 16 40 H 0.09 1.21 8.10 -2.49 -0.02 1.19 16 41 H 0.10 0.59 3.58 -2.99 -0.01 0.58 16 42 H 0.08 0.44 8.27 -1.54 -0.01 0.43 16 43 H 0.07 0.51 8.26 -1.60 -0.01 0.49 16 44 H 0.05 0.61 6.09 -1.92 -0.01 0.60 16 45 H 0.07 0.55 8.27 -1.59 -0.01 0.54 16 46 H 0.05 0.57 6.42 -1.92 -0.01 0.56 16 47 H 0.09 0.57 5.82 -2.59 -0.02 0.55 16 48 H 0.06 0.58 8.25 -1.68 -0.01 0.56 16 49 H 0.07 1.07 8.18 -2.11 -0.02 1.05 16 50 H 0.06 1.15 5.63 -2.48 -0.01 1.14 16 51 H 0.12 1.27 5.55 -2.55 -0.01 1.26 16 52 H 0.05 1.04 7.73 -1.67 -0.01 1.02 16 Total: -1.00 -70.02 373.02 1.09 -68.94 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.63 Total: 20.01 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 6.35 Total: 27.65 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -7.80 Total: -122.35 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.12 Total: -40.89 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.02 1.09 -68.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103461061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.572 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds