Wall clock time and date at job start Tue Mar 31 2020 20:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47289 * 2 1 4 4 C 1.52996 * 109.47044 * 120.00649 * 2 1 3 5 5 C 1.50701 * 109.47114 * 185.00086 * 4 2 1 6 6 O 1.21281 * 119.99997 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00220 * 179.97438 * 5 4 2 8 8 C 1.46970 * 120.59234 * 359.71705 * 7 5 4 9 9 C 1.53812 * 108.39856 * 124.75694 * 8 7 5 10 10 N 1.46976 * 108.57595 * 49.63566 * 9 8 7 11 11 C 1.36938 * 120.58634 * 124.62767 * 10 9 8 12 12 H 1.08003 * 119.99593 * 208.17230 * 11 10 9 13 13 C 1.38805 * 120.00688 * 28.17512 * 11 10 9 14 14 N 1.31619 * 119.99910 * 17.57060 * 13 11 10 15 15 Si 1.86801 * 120.00132 * 197.57019 * 13 11 10 16 16 H 1.48499 * 109.47307 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47350 * 120.00160 * 15 13 11 18 18 H 1.48503 * 109.46959 * 240.00035 * 15 13 11 19 19 C 1.46958 * 118.81360 * 304.64628 * 10 9 8 20 20 C 1.46964 * 120.59692 * 179.97438 * 7 5 4 21 21 N 1.46502 * 109.47002 * 240.00034 * 2 1 3 22 22 C 1.34780 * 119.99997 * 84.72822 * 21 2 1 23 23 O 1.21283 * 119.99428 * 359.97438 * 22 21 2 24 24 C 1.50699 * 120.00000 * 180.02562 * 22 21 2 25 25 C 1.54261 * 110.03131 * 297.90495 * 24 22 21 26 26 C 1.54963 * 104.16080 * 217.14019 * 25 24 22 27 27 C 1.54886 * 102.77984 * 37.88471 * 26 25 24 28 28 C 1.53872 * 110.02946 * 180.68908 * 24 22 21 29 29 H 1.08997 * 109.47137 * 60.00244 * 1 2 3 30 30 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46963 * 299.99683 * 1 2 3 32 32 H 1.08999 * 109.47157 * 304.99582 * 4 2 1 33 33 H 1.09002 * 109.47571 * 64.99742 * 4 2 1 34 34 H 1.08998 * 109.60889 * 244.53964 * 8 7 5 35 35 H 1.09001 * 109.61154 * 5.05364 * 8 7 5 36 36 H 1.09003 * 109.74330 * 289.85455 * 9 8 7 37 37 H 1.08998 * 109.53749 * 169.29950 * 9 8 7 38 38 H 0.97001 * 120.00534 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.61038 * 295.47950 * 19 10 9 40 40 H 1.08998 * 109.75132 * 175.05385 * 19 10 9 41 41 H 1.09005 * 109.60961 * 354.94795 * 20 7 5 42 42 H 1.08998 * 109.60904 * 115.28663 * 20 7 5 43 43 H 0.96997 * 120.00291 * 265.00060 * 21 2 1 44 44 H 1.09002 * 110.01660 * 59.29835 * 24 22 21 45 45 H 1.09003 * 110.48920 * 335.77983 * 25 24 22 46 46 H 1.08996 * 110.48947 * 98.42864 * 25 24 22 47 47 H 1.09002 * 110.71927 * 279.57243 * 26 25 24 48 48 H 1.09001 * 110.92623 * 156.29488 * 26 25 24 49 49 H 1.09004 * 110.49242 * 203.40841 * 27 26 25 50 50 H 1.09002 * 110.60112 * 80.81881 * 27 26 25 51 51 H 1.09006 * 110.03072 * 238.56969 * 28 24 22 52 52 H 1.08999 * 110.03586 * 359.94890 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6150 1.3127 6 8 4.1450 -0.0212 0.4441 7 7 4.2149 -1.1799 2.3347 8 6 3.4967 -1.8972 3.3975 9 6 4.0759 -3.3184 3.5010 10 7 5.5407 -3.2226 3.5758 11 6 6.2243 -3.7958 4.6148 12 1 7.1688 -3.3806 4.9341 13 6 5.7034 -4.9104 5.2575 14 7 4.7596 -5.6225 4.6791 15 14 6.3419 -5.3998 6.9434 16 1 7.3945 -4.4435 7.3709 17 1 5.2249 -5.3770 7.9216 18 1 6.9145 -6.7685 6.8777 19 6 6.2583 -2.5005 2.5160 20 6 5.6795 -1.0846 2.4093 21 7 2.0183 -0.6906 -1.1962 22 6 2.1418 -0.0196 -2.3585 23 8 1.8482 1.1559 -2.4142 24 6 2.6436 -0.7301 -3.5891 25 6 4.0807 -1.2399 -3.3559 26 6 4.7809 -1.0387 -4.7236 27 6 4.1864 0.3030 -5.2189 28 6 2.7105 0.2502 -4.7733 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.6293 -1.3753 4.3452 35 1 2.4362 -1.9499 3.1512 36 1 3.7916 -3.8968 2.6220 37 1 3.6947 -3.8028 4.3999 38 1 4.3953 -6.4012 5.1283 39 1 6.1294 -3.0208 1.5669 40 1 7.3189 -2.4447 2.7614 41 1 6.0609 -0.6005 1.5102 42 1 5.9641 -0.5035 3.2864 43 1 2.2490 -1.6318 -1.1527 44 1 1.9861 -1.5649 -3.8321 45 1 4.5746 -0.6491 -2.5843 46 1 4.0717 -2.2950 -3.0826 47 1 4.5296 -1.8487 -5.4084 48 1 5.8611 -0.9605 -4.6002 49 1 4.2549 0.3732 -6.3045 50 1 4.6964 1.1447 -4.7502 51 1 2.0861 -0.1093 -5.5913 52 1 2.3792 1.2396 -4.4581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152777044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:07 Heat of formation + Delta-G solvation = -63.724805 kcal Electronic energy + Delta-G solvation = -30747.528882 eV Core-core repulsion = 26746.833449 eV Total energy + Delta-G solvation = -4000.695433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.37087 -39.54086 -37.43986 -36.80038 -35.50290 -33.90914 -32.04553 -31.32475 -30.25685 -29.06791 -28.68486 -28.22573 -26.64045 -23.76938 -23.13953 -22.58457 -21.18877 -20.77809 -20.32725 -19.59034 -18.60258 -17.43323 -17.21157 -16.37902 -16.08917 -15.82091 -15.50663 -14.99123 -14.85193 -14.76190 -14.20780 -13.87294 -13.75178 -13.67408 -13.45494 -13.37973 -13.30927 -12.90233 -12.72270 -12.42328 -12.05545 -11.86558 -11.78222 -11.64832 -11.42718 -11.40185 -11.22086 -11.18947 -11.02424 -10.88843 -10.84627 -10.78794 -10.61981 -10.53655 -10.30715 -10.08103 -9.90123 -9.62410 -9.39954 -8.98570 -8.66540 -8.28077 -6.78455 -5.92861 -3.36817 2.75854 2.94481 3.23847 3.28627 3.36534 3.38067 3.40696 4.37165 4.38569 4.48815 4.60157 4.68414 4.70946 5.08419 5.11520 5.19738 5.22681 5.25600 5.32416 5.34599 5.39889 5.41364 5.51071 5.52866 5.55567 5.59816 5.72818 5.76169 5.80649 5.82478 5.88929 5.92935 6.00208 6.05685 6.07979 6.12073 6.17106 6.22827 6.24380 6.27490 6.37685 6.57644 6.71612 6.86917 7.13073 7.37366 7.57487 7.66518 7.87733 8.28745 8.33630 8.53158 9.05195 9.67656 10.24286 11.14905 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.002694 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.614727 B =10389.274326 C =11213.908305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.094 0.906 4 C -0.151 4.151 5 C 0.506 3.494 6 O -0.548 6.548 7 N -0.597 5.597 8 C 0.078 3.922 9 C 0.158 3.842 10 N -0.591 5.591 11 C -0.255 4.255 12 H 0.068 0.932 13 C 0.003 3.997 14 N -0.902 5.902 15 Si 0.903 3.097 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.290 1.290 19 C 0.133 3.867 20 C 0.096 3.904 21 N -0.712 5.712 22 C 0.527 3.473 23 O -0.545 6.545 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.100 0.900 38 H 0.255 0.745 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.398 0.602 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.064 0.936 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 7.813 -13.081 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.112 0.888 4 C -0.191 4.191 5 C 0.293 3.707 6 O -0.427 6.427 7 N -0.330 5.330 8 C -0.046 4.046 9 C 0.032 3.968 10 N -0.314 5.314 11 C -0.384 4.384 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.547 5.547 15 Si 0.733 3.267 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.217 1.217 19 C 0.006 3.994 20 C -0.028 4.028 21 N -0.362 5.362 22 C 0.314 3.686 23 O -0.423 6.423 24 C -0.135 4.135 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.161 4.161 28 C -0.155 4.155 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.231 0.769 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.082 0.918 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.531 8.812 -13.474 17.774 hybrid contribution 0.327 -1.057 1.173 1.612 sum -7.204 7.755 -12.301 16.228 Atomic orbital electron populations 1.22190 0.95020 1.02217 1.02676 1.20641 0.93122 0.97988 0.82826 0.88844 1.22060 0.93872 1.03406 0.99782 1.20476 0.89636 0.78953 0.81604 1.90679 1.70062 1.43283 1.38660 1.48088 1.07762 1.53241 1.23907 1.22786 0.95238 0.96960 0.89608 1.21253 0.83980 0.89590 1.02018 1.43991 1.01231 1.62349 1.23829 1.19247 1.05312 1.06775 1.07077 0.91442 1.25057 0.99463 0.95305 0.99715 1.70018 1.30663 1.17276 1.36694 0.86209 0.78280 0.78084 0.84118 1.20196 1.21449 1.21656 1.21270 0.95959 0.90067 0.92113 1.22165 0.79363 0.99717 1.01529 1.45848 1.67199 1.13751 1.09367 1.20432 0.76495 0.87108 0.84565 1.90628 1.50468 1.16186 1.85012 1.21935 0.98583 0.99142 0.93791 1.22374 0.93127 1.01365 0.98481 1.22498 0.99897 0.97432 0.96248 1.22354 0.95634 0.97835 1.00310 1.22145 0.96958 1.00791 0.95650 0.91887 0.92328 0.91520 0.87688 0.88386 0.91807 0.91034 0.95895 0.88231 0.93529 0.95981 0.91628 0.90092 0.92134 0.76875 0.88813 0.90295 0.91059 0.91482 0.91345 0.91747 0.91527 0.91755 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.16 1.91 2.13 -67.93 -0.14 1.77 16 3 H 0.09 1.40 7.40 -51.93 -0.38 1.02 16 4 C -0.15 -1.74 3.58 -27.88 -0.10 -1.84 16 5 C 0.51 7.95 7.56 -10.98 -0.08 7.87 16 6 O -0.55 -10.16 14.76 5.56 0.08 -10.07 16 7 N -0.60 -10.03 2.94 -172.23 -0.51 -10.53 16 8 C 0.08 1.29 6.54 -3.36 -0.02 1.27 16 9 C 0.16 3.38 5.53 -3.36 -0.02 3.36 16 10 N -0.59 -13.85 2.97 -171.79 -0.51 -14.36 16 11 C -0.25 -6.59 9.58 -15.06 -0.14 -6.73 16 12 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 13 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 14 N -0.90 -24.56 11.20 55.49 0.62 -23.94 16 15 Si 0.90 20.60 29.59 -169.99 -5.03 15.57 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.13 2.68 6.67 -3.62 -0.02 2.66 16 20 C 0.10 1.71 6.59 -3.62 -0.02 1.69 16 21 N -0.71 -8.60 4.15 -53.81 -0.22 -8.83 16 22 C 0.53 7.13 6.96 -10.98 -0.08 7.05 16 23 O -0.55 -9.22 14.88 5.55 0.08 -9.13 16 24 C -0.11 -1.21 3.29 -90.66 -0.30 -1.51 16 25 C -0.12 -1.24 6.30 -25.04 -0.16 -1.39 16 26 C -0.12 -1.15 6.91 -24.70 -0.17 -1.32 16 27 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 28 C -0.12 -1.23 6.40 -25.61 -0.16 -1.40 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 33 H 0.10 1.00 7.73 -51.93 -0.40 0.60 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.94 5.91 -51.93 -0.31 0.63 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 2.37 5.99 -51.93 -0.31 2.06 16 38 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 41 H 0.08 1.42 6.99 -51.93 -0.36 1.06 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.40 4.24 8.59 -40.82 -0.35 3.89 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 51 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.09 1.13 6.39 -51.93 -0.33 0.80 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -31.45 403.94 -9.88 -41.33 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -9.15 Total: 4.99 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.33 Total: 8.89 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.62 Total: -57.66 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.16 Total: -19.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.45 -9.88 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152777044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.397 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds