Wall clock time and date at job start Tue Mar 31 2020 20:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47289 * 2 1 4 4 C 1.52996 * 109.47044 * 120.00649 * 2 1 3 5 5 C 1.50701 * 109.47114 * 185.00086 * 4 2 1 6 6 O 1.21281 * 119.99997 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00220 * 179.97438 * 5 4 2 8 8 C 1.46970 * 120.59234 * 359.71705 * 7 5 4 9 9 C 1.53812 * 108.39856 * 124.75694 * 8 7 5 10 10 N 1.46976 * 108.57595 * 49.63566 * 9 8 7 11 11 C 1.36938 * 120.58634 * 124.62767 * 10 9 8 12 12 H 1.08003 * 119.99593 * 208.17230 * 11 10 9 13 13 C 1.38805 * 120.00688 * 28.17512 * 11 10 9 14 14 N 1.31619 * 119.99910 * 17.57060 * 13 11 10 15 15 Si 1.86801 * 120.00132 * 197.57019 * 13 11 10 16 16 H 1.48499 * 109.47307 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47350 * 120.00160 * 15 13 11 18 18 H 1.48503 * 109.46959 * 240.00035 * 15 13 11 19 19 C 1.46958 * 118.81360 * 304.64628 * 10 9 8 20 20 C 1.46964 * 120.59692 * 179.97438 * 7 5 4 21 21 N 1.46502 * 109.47002 * 240.00034 * 2 1 3 22 22 C 1.34780 * 119.99997 * 84.72822 * 21 2 1 23 23 O 1.21283 * 119.99428 * 359.97438 * 22 21 2 24 24 C 1.50699 * 120.00000 * 180.02562 * 22 21 2 25 25 C 1.54261 * 110.03131 * 297.90495 * 24 22 21 26 26 C 1.54963 * 104.16080 * 217.14019 * 25 24 22 27 27 C 1.54886 * 102.77984 * 37.88471 * 26 25 24 28 28 C 1.53872 * 110.02946 * 180.68908 * 24 22 21 29 29 H 1.08997 * 109.47137 * 60.00244 * 1 2 3 30 30 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46963 * 299.99683 * 1 2 3 32 32 H 1.08999 * 109.47157 * 304.99582 * 4 2 1 33 33 H 1.09002 * 109.47571 * 64.99742 * 4 2 1 34 34 H 1.08998 * 109.60889 * 244.53964 * 8 7 5 35 35 H 1.09001 * 109.61154 * 5.05364 * 8 7 5 36 36 H 1.09003 * 109.74330 * 289.85455 * 9 8 7 37 37 H 1.08998 * 109.53749 * 169.29950 * 9 8 7 38 38 H 0.97001 * 120.00534 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.61038 * 295.47950 * 19 10 9 40 40 H 1.08998 * 109.75132 * 175.05385 * 19 10 9 41 41 H 1.09005 * 109.60961 * 354.94795 * 20 7 5 42 42 H 1.08998 * 109.60904 * 115.28663 * 20 7 5 43 43 H 0.96997 * 120.00291 * 265.00060 * 21 2 1 44 44 H 1.09002 * 110.01660 * 59.29835 * 24 22 21 45 45 H 1.09003 * 110.48920 * 335.77983 * 25 24 22 46 46 H 1.08996 * 110.48947 * 98.42864 * 25 24 22 47 47 H 1.09002 * 110.71927 * 279.57243 * 26 25 24 48 48 H 1.09001 * 110.92623 * 156.29488 * 26 25 24 49 49 H 1.09004 * 110.49242 * 203.40841 * 27 26 25 50 50 H 1.09002 * 110.60112 * 80.81881 * 27 26 25 51 51 H 1.09006 * 110.03072 * 238.56969 * 28 24 22 52 52 H 1.08999 * 110.03586 * 359.94890 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5419 -0.6150 1.3127 6 8 4.1450 -0.0212 0.4441 7 7 4.2149 -1.1799 2.3347 8 6 3.4967 -1.8972 3.3975 9 6 4.0759 -3.3184 3.5010 10 7 5.5407 -3.2226 3.5758 11 6 6.2243 -3.7958 4.6148 12 1 7.1688 -3.3806 4.9341 13 6 5.7034 -4.9104 5.2575 14 7 4.7596 -5.6225 4.6791 15 14 6.3419 -5.3998 6.9434 16 1 7.3945 -4.4435 7.3709 17 1 5.2249 -5.3770 7.9216 18 1 6.9145 -6.7685 6.8777 19 6 6.2583 -2.5005 2.5160 20 6 5.6795 -1.0846 2.4093 21 7 2.0183 -0.6906 -1.1962 22 6 2.1418 -0.0196 -2.3585 23 8 1.8482 1.1559 -2.4142 24 6 2.6436 -0.7301 -3.5891 25 6 4.0807 -1.2399 -3.3559 26 6 4.7809 -1.0387 -4.7236 27 6 4.1864 0.3030 -5.2189 28 6 2.7105 0.2502 -4.7733 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.6293 -1.3753 4.3452 35 1 2.4362 -1.9499 3.1512 36 1 3.7916 -3.8968 2.6220 37 1 3.6947 -3.8028 4.3999 38 1 4.3953 -6.4012 5.1283 39 1 6.1294 -3.0208 1.5669 40 1 7.3189 -2.4447 2.7614 41 1 6.0609 -0.6005 1.5102 42 1 5.9641 -0.5035 3.2864 43 1 2.2490 -1.6318 -1.1527 44 1 1.9861 -1.5649 -3.8321 45 1 4.5746 -0.6491 -2.5843 46 1 4.0717 -2.2950 -3.0826 47 1 4.5296 -1.8487 -5.4084 48 1 5.8611 -0.9605 -4.6002 49 1 4.2549 0.3732 -6.3045 50 1 4.6964 1.1447 -4.7502 51 1 2.0861 -0.1093 -5.5913 52 1 2.3792 1.2396 -4.4581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152777044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:06 Heat of formation + Delta-G solvation = -82.565067 kcal Electronic energy + Delta-G solvation = -30748.345857 eV Core-core repulsion = 26746.833449 eV Total energy + Delta-G solvation = -4001.512408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.47307 -40.76615 -38.63165 -38.03379 -36.60664 -35.56510 -33.43813 -32.70094 -31.82800 -29.96936 -29.54591 -29.32270 -28.16055 -25.43773 -24.51843 -23.76038 -22.42004 -21.70763 -21.48250 -20.58838 -20.01053 -18.76564 -18.37967 -17.68693 -17.39790 -16.98796 -16.63219 -16.51512 -16.15429 -15.85991 -15.45905 -15.32208 -15.24055 -15.04427 -14.79968 -14.56173 -14.26756 -14.12685 -13.89985 -13.41755 -13.30695 -13.19005 -12.95434 -12.84053 -12.70164 -12.64254 -12.46123 -12.24528 -12.20770 -12.04200 -12.02371 -12.00117 -11.96145 -11.76932 -11.67624 -11.64142 -11.42076 -10.76011 -10.68202 -10.57240 -10.01212 -9.77485 -8.64010 -7.88642 -5.35785 1.47422 1.51335 1.60359 1.68832 1.73755 2.07715 2.30230 2.51651 3.25988 3.51716 3.55550 3.60783 3.64549 3.70721 3.83236 4.17956 4.24885 4.26413 4.26970 4.39733 4.41805 4.45751 4.52979 4.55509 4.59003 4.60857 4.67294 4.69064 4.70423 4.76436 4.78063 4.82953 4.84391 4.96373 5.05434 5.07459 5.08699 5.21642 5.24321 5.25328 5.31951 5.37675 5.45061 5.57158 5.62109 5.62763 5.69124 6.36521 6.53798 6.62437 7.12420 7.24647 7.33551 7.79778 8.32465 9.16152 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016847 B = 0.002694 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.614727 B =10389.274326 C =11213.908305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.058 0.942 4 C -0.141 4.141 5 C 0.504 3.496 6 O -0.579 6.579 7 N -0.603 5.603 8 C 0.094 3.906 9 C 0.162 3.838 10 N -0.609 5.609 11 C -0.265 4.265 12 H 0.064 0.936 13 C -0.042 4.042 14 N -0.929 5.929 15 Si 0.964 3.036 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.295 1.295 19 C 0.135 3.865 20 C 0.107 3.893 21 N -0.707 5.707 22 C 0.519 3.481 23 O -0.587 6.587 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.005 0.995 37 H 0.074 0.926 38 H 0.252 0.748 39 H 0.011 0.989 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.406 0.594 44 H 0.122 0.878 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.084 0.916 50 H 0.047 0.953 51 H 0.086 0.914 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 7.313 -13.166 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.054 3.946 3 H 0.076 0.924 4 C -0.181 4.181 5 C 0.294 3.706 6 O -0.459 6.459 7 N -0.335 5.335 8 C -0.029 4.029 9 C 0.036 3.964 10 N -0.333 5.333 11 C -0.395 4.395 12 H 0.082 0.918 13 C -0.238 4.238 14 N -0.575 5.575 15 Si 0.793 3.207 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.222 1.222 19 C 0.009 3.991 20 C -0.017 4.017 21 N -0.357 5.357 22 C 0.307 3.693 23 O -0.468 6.468 24 C -0.131 4.131 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.161 4.161 28 C -0.156 4.156 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.023 0.977 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.241 0.759 44 H 0.140 0.860 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.107 0.893 48 H 0.086 0.914 49 H 0.103 0.897 50 H 0.065 0.935 51 H 0.105 0.895 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.775 8.313 -13.555 18.161 hybrid contribution 0.773 -0.883 1.154 1.646 sum -8.003 7.430 -12.400 16.523 Atomic orbital electron populations 1.22102 0.92780 1.03457 1.02756 1.20632 0.94715 0.96202 0.83045 0.92362 1.22111 0.90317 1.05052 1.00625 1.21204 0.91334 0.77705 0.80354 1.90684 1.71189 1.44461 1.39605 1.48150 1.07282 1.53599 1.24465 1.22597 0.97011 0.93470 0.89864 1.21130 0.83098 0.92275 0.99874 1.44257 1.02328 1.62520 1.24150 1.19496 1.05427 1.06804 1.07752 0.91781 1.25708 1.00068 0.95482 1.02590 1.70143 1.31853 1.17658 1.37806 0.85261 0.77765 0.77266 0.80413 1.19539 1.21241 1.22239 1.21293 0.96122 0.91021 0.90686 1.21908 0.80455 0.97763 1.01622 1.45881 1.66520 1.14082 1.09173 1.20980 0.75867 0.86770 0.85664 1.90608 1.52407 1.18021 1.85758 1.22011 0.98854 0.99708 0.92489 1.22320 0.92984 1.01368 0.98398 1.22509 0.99681 0.97795 0.95640 1.22356 0.94903 0.97445 1.01407 1.22145 0.97796 0.99388 0.96245 0.93626 0.90398 0.89689 0.84805 0.86000 0.91589 0.86805 0.97702 0.90793 0.93854 0.97149 0.91538 0.90094 0.91820 0.75911 0.85997 0.93800 0.89760 0.89305 0.91438 0.89743 0.93453 0.89549 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.48 71.98 0.68 -1.93 16 2 C 0.16 3.61 2.13 44.99 0.10 3.70 16 3 H 0.06 1.76 7.40 -2.39 -0.02 1.74 16 4 C -0.14 -2.83 3.58 29.85 0.11 -2.72 16 5 C 0.50 15.05 7.56 87.66 0.66 15.71 16 6 O -0.58 -21.35 14.76 -3.03 -0.04 -21.40 16 7 N -0.60 -19.25 2.94 -817.21 -2.40 -21.66 16 8 C 0.09 2.89 6.54 86.56 0.57 3.46 16 9 C 0.16 6.84 5.53 86.56 0.48 7.32 16 10 N -0.61 -28.53 2.97 -697.41 -2.07 -30.60 16 11 C -0.26 -13.72 9.58 84.03 0.80 -12.92 16 12 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 13 C -0.04 -2.22 4.90 84.86 0.42 -1.80 16 14 N -0.93 -50.91 11.20 21.65 0.24 -50.67 16 15 Si 0.96 42.35 29.59 68.60 2.03 44.38 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.30 -13.14 7.11 99.48 0.71 -12.44 16 19 C 0.14 5.47 6.67 86.40 0.58 6.05 16 20 C 0.11 3.74 6.59 86.40 0.57 4.31 16 21 N -0.71 -16.47 4.15 -442.53 -1.84 -18.31 16 22 C 0.52 14.08 6.96 87.66 0.61 14.69 16 23 O -0.59 -20.60 14.88 -3.04 -0.05 -20.65 16 24 C -0.11 -2.23 3.29 -10.82 -0.04 -2.27 16 25 C -0.11 -2.33 6.30 31.69 0.20 -2.13 16 26 C -0.12 -2.04 6.91 31.91 0.22 -1.82 16 27 C -0.12 -2.29 6.83 31.67 0.22 -2.07 16 28 C -0.12 -2.39 6.40 31.32 0.20 -2.19 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.13 2.00 7.90 -2.39 -0.02 1.98 16 33 H 0.12 1.96 7.73 -2.39 -0.02 1.94 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.11 2.53 5.91 -2.39 -0.01 2.51 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.07 3.52 5.99 -2.39 -0.01 3.50 16 38 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 2.62 7.94 -2.39 -0.02 2.60 16 41 H 0.08 2.84 6.99 -2.38 -0.02 2.82 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.41 8.00 8.59 -92.71 -0.80 7.20 16 44 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 1.21 7.85 -2.39 -0.02 1.20 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 52 H 0.06 1.61 6.39 -2.39 -0.02 1.59 16 Total: -1.00 -70.76 403.94 2.35 -68.42 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.11 Total: 25.12 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 6.37 Total: 25.38 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -6.07 Total: -121.25 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.09 Total: -42.04 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -70.76 2.35 -68.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152777044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.147 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds