Wall clock time and date at job start Tue Mar 31 2020 20:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47148 * 120.00747 * 2 1 3 5 5 H 1.08002 * 120.00647 * 120.00035 * 4 2 1 6 6 C 1.37887 * 119.99747 * 299.99442 * 4 2 1 7 7 N 1.31512 * 119.99982 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00104 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47102 * 60.00308 * 8 6 4 10 10 H 1.48496 * 109.47083 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47336 * 300.00521 * 8 6 4 12 12 N 1.46503 * 109.46926 * 240.00231 * 2 1 3 13 13 C 1.46507 * 120.00297 * 304.69772 * 12 2 1 14 14 C 1.34772 * 120.00031 * 124.69919 * 12 2 1 15 15 O 1.21285 * 120.00090 * 174.32360 * 14 12 2 16 16 C 1.50698 * 120.00249 * 354.31705 * 14 12 2 17 17 H 1.09002 * 109.52210 * 315.29159 * 16 14 12 18 18 C 1.53038 * 109.50462 * 195.20435 * 16 14 12 19 19 C 1.53035 * 109.54174 * 178.68464 * 18 16 14 20 20 C 1.52766 * 109.38199 * 61.23797 * 19 18 16 21 21 N 1.46920 * 109.01033 * 305.58925 * 20 19 18 22 22 C 1.34776 * 120.63245 * 233.58020 * 21 20 19 23 23 O 1.21591 * 120.00457 * 197.03009 * 22 21 20 24 24 N 1.34781 * 119.99637 * 17.03090 * 22 21 20 25 25 C 1.47025 * 125.64595 * 185.58360 * 24 22 21 26 26 C 1.54320 * 107.26962 * 181.09864 * 25 24 22 27 27 C 1.55156 * 103.10334 * 22.10696 * 26 25 24 28 28 C 1.47418 * 125.65089 * 5.63365 * 24 22 21 29 29 C 1.46926 * 118.73737 * 53.31187 * 21 20 19 30 30 H 1.09001 * 109.47212 * 59.99576 * 1 2 3 31 31 H 1.09002 * 109.47413 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47308 * 299.99924 * 1 2 3 33 33 H 0.97000 * 119.99955 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46809 * 274.98176 * 13 12 2 35 35 H 1.08999 * 109.46643 * 34.97457 * 13 12 2 36 36 H 1.08997 * 109.47468 * 154.97835 * 13 12 2 37 37 H 1.09004 * 109.45723 * 298.70762 * 18 16 14 38 38 H 1.09000 * 109.45641 * 58.66423 * 18 16 14 39 39 H 1.08994 * 109.50041 * 181.31316 * 19 18 16 40 40 H 1.08997 * 109.49905 * 301.38492 * 19 18 16 41 41 H 1.09001 * 109.50578 * 185.70463 * 20 19 18 42 42 H 1.09002 * 109.43043 * 65.42838 * 20 19 18 43 43 H 1.08995 * 109.87976 * 61.68035 * 25 24 22 44 44 H 1.09000 * 109.88330 * 300.51604 * 25 24 22 45 45 H 1.08999 * 110.72251 * 140.55806 * 26 25 24 46 46 H 1.08998 * 110.71879 * 263.65354 * 26 25 24 47 47 H 1.08995 * 111.00707 * 82.66012 * 27 26 25 48 48 H 1.09004 * 111.00559 * 206.51437 * 27 26 25 49 49 H 1.09001 * 110.36551 * 274.67337 * 28 24 22 50 50 H 1.09000 * 110.36754 * 36.99150 * 28 24 22 51 51 H 1.09000 * 109.58937 * 66.42820 * 29 21 20 52 52 H 1.09008 * 109.58758 * 186.71558 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3225 -1.1198 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8269 -0.4202 5.2203 11 1 1.8280 -2.5200 4.0080 12 7 2.0183 -0.6906 -1.1962 13 6 1.5815 -2.0597 -1.4814 14 6 2.8693 -0.0665 -2.0344 15 8 3.3540 -0.6710 -2.9675 16 6 3.2186 1.3826 -1.8124 17 1 2.3124 1.9457 -1.5895 18 6 3.8747 1.9490 -3.0737 19 6 4.2001 3.4292 -2.8608 20 6 5.1822 3.5704 -1.6993 21 7 4.6254 2.8985 -0.5173 22 6 4.5066 3.5553 0.6536 23 8 4.3450 2.9334 1.6859 24 7 4.5670 4.9015 0.6803 25 6 4.5688 5.7352 1.8913 26 6 4.6210 7.2080 1.4334 27 6 4.0775 7.1445 -0.0184 28 6 4.6411 5.7818 -0.4998 29 6 4.1949 1.4989 -0.6376 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7089 1.1611 3.4845 34 1 2.2171 -2.7632 -0.9436 35 1 0.5475 -2.1854 -1.1602 36 1 1.6549 -2.2489 -2.5523 37 1 4.7940 1.4014 -3.2820 38 1 3.1914 1.8450 -3.9164 39 1 4.6460 3.8377 -3.7675 40 1 3.2845 3.9731 -2.6285 41 1 5.3372 4.6268 -1.4800 42 1 6.1317 3.1080 -1.9690 43 1 5.4439 5.5046 2.4988 44 1 3.6593 5.5575 2.4651 45 1 3.9796 7.8292 2.0585 46 1 5.6457 7.5795 1.4457 47 1 2.9876 7.1404 -0.0278 48 1 4.4688 7.9662 -0.6184 49 1 5.6756 5.8954 -0.8239 50 1 4.0306 5.3826 -1.3098 51 1 5.0622 0.8641 -0.8190 52 1 3.7007 1.1882 0.2830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171550556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:08 Heat of formation + Delta-G solvation = -45.280981 kcal Electronic energy + Delta-G solvation = -32352.887478 eV Core-core repulsion = 28352.991829 eV Total energy + Delta-G solvation = -3999.895649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00190 -40.93201 -38.68937 -38.11130 -37.38118 -34.56573 -34.20183 -32.75037 -31.98880 -31.01073 -30.00343 -28.08447 -27.28716 -26.77727 -24.86929 -23.80274 -23.13241 -22.38491 -21.76980 -20.43930 -19.90121 -18.56510 -18.33375 -17.85127 -17.54950 -17.20495 -16.83834 -16.47657 -16.20313 -15.85276 -15.47607 -15.25320 -14.91583 -14.81500 -14.60046 -14.54436 -14.23657 -13.98178 -13.89955 -13.76080 -13.52491 -13.38236 -13.12241 -13.04689 -12.89920 -12.70899 -12.62443 -12.44219 -12.30239 -12.20372 -12.16728 -12.08636 -11.85083 -11.66423 -11.54983 -11.37300 -11.24099 -10.97672 -10.65546 -10.48363 -9.92426 -9.43294 -9.31724 -8.15175 -6.27461 1.34340 1.37153 1.40142 1.43918 1.73609 2.10136 2.29174 2.45304 2.81227 3.16108 3.53985 3.65095 3.71206 3.77493 3.85502 4.04775 4.10106 4.12588 4.17527 4.29299 4.44519 4.47477 4.51167 4.57367 4.63950 4.67425 4.68453 4.78566 4.86072 4.89453 4.90972 4.91795 4.95238 4.97215 5.00465 5.02157 5.06546 5.14676 5.17466 5.32139 5.35467 5.39499 5.43139 5.54138 5.57416 5.71777 5.96950 5.99445 6.18505 6.60987 6.80774 6.93245 7.25087 7.44620 7.53092 8.87239 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.005227 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.362812 B = 5355.302415 C = 7375.892024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.262 3.738 3 H 0.039 0.961 4 C -0.538 4.538 5 H 0.046 0.954 6 C 0.035 3.965 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.288 1.288 10 H -0.283 1.283 11 H -0.264 1.264 12 N -0.598 5.598 13 C 0.093 3.907 14 C 0.511 3.489 15 O -0.588 6.588 16 C -0.106 4.106 17 H 0.084 0.916 18 C -0.092 4.092 19 C -0.124 4.124 20 C 0.057 3.943 21 N -0.623 5.623 22 C 0.711 3.289 23 O -0.629 6.629 24 N -0.637 5.637 25 C 0.115 3.885 26 C -0.117 4.117 27 C -0.125 4.125 28 C 0.080 3.920 29 C 0.148 3.852 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.145 0.855 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.038 0.962 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.121 0.879 49 H 0.102 0.898 50 H 0.090 0.910 51 H 0.054 0.946 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 16.618 -10.336 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.160 3.840 3 H 0.056 0.944 4 C -0.577 4.577 5 H 0.065 0.935 6 C -0.166 4.166 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.214 1.214 10 H -0.209 1.209 11 H -0.188 1.188 12 N -0.327 5.327 13 C -0.049 4.049 14 C 0.299 3.701 15 O -0.471 6.471 16 C -0.128 4.128 17 H 0.102 0.898 18 C -0.130 4.130 19 C -0.162 4.162 20 C -0.063 4.063 21 N -0.360 5.360 22 C 0.414 3.586 23 O -0.508 6.508 24 N -0.376 5.376 25 C -0.008 4.008 26 C -0.155 4.155 27 C -0.163 4.163 28 C -0.041 4.041 29 C 0.023 3.977 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.162 0.838 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.088 0.912 48 H 0.139 0.861 49 H 0.119 0.881 50 H 0.108 0.892 51 H 0.072 0.928 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.668 15.985 -10.077 20.038 hybrid contribution 0.004 -1.281 1.574 2.029 sum 6.672 14.704 -8.502 18.249 Atomic orbital electron populations 1.21961 0.97273 1.00181 1.00502 1.18859 0.91946 0.92452 0.80715 0.94350 1.21343 1.32078 1.13024 0.91215 0.93523 1.25380 0.94824 0.95370 1.01041 1.69905 1.36644 1.23047 1.24040 0.85849 0.78184 0.79232 0.79783 1.21413 1.20864 1.18849 1.48332 1.44603 1.15443 1.24323 1.21479 1.00271 0.82496 1.00688 1.20744 0.78376 0.89519 0.81433 1.90558 1.54480 1.68457 1.33559 1.21559 1.00088 0.92598 0.98565 0.89756 1.21327 1.00839 0.96654 0.94182 1.21881 1.00031 0.94883 0.99394 1.23135 0.96830 1.02165 0.84174 1.47057 1.66657 1.12023 1.10216 1.15783 0.77906 0.81365 0.83566 1.90984 1.58334 1.67428 1.34103 1.47635 1.77512 1.02432 1.09998 1.21926 1.00415 0.91637 0.86838 1.22634 1.03743 0.91836 0.97308 1.22908 1.01176 0.96220 0.96014 1.23040 1.02282 0.90475 0.88266 1.21174 0.96466 0.81628 0.98388 0.95176 0.93990 0.90973 0.92983 0.93905 0.90497 0.91059 0.91555 0.90987 0.86382 0.91236 0.83828 0.91075 0.92832 0.94327 0.88763 0.88459 0.91230 0.86091 0.88071 0.89159 0.92795 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 8.83 71.98 0.64 -5.95 16 2 C 0.26 13.00 1.87 44.24 0.08 13.08 16 3 H 0.04 2.08 4.44 -2.39 -0.01 2.07 16 4 C -0.54 -29.83 7.93 25.60 0.20 -29.63 16 5 H 0.05 2.64 7.79 -2.91 -0.02 2.62 16 6 C 0.04 2.01 5.30 84.66 0.45 2.46 16 7 N -0.90 -52.31 11.32 21.45 0.24 -52.07 16 8 Si 0.94 46.54 29.54 68.60 2.03 48.56 16 9 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.60 -26.70 2.75 -826.80 -2.28 -28.97 16 13 C 0.09 3.69 9.92 127.77 1.27 4.96 16 14 C 0.51 21.88 6.90 87.66 0.60 22.48 16 15 O -0.59 -26.48 15.59 -3.04 -0.05 -26.53 16 16 C -0.11 -3.92 1.80 -11.46 -0.02 -3.94 16 17 H 0.08 3.27 7.12 -2.39 -0.02 3.26 16 18 C -0.09 -2.55 4.55 30.62 0.14 -2.41 16 19 C -0.12 -2.35 5.69 30.53 0.17 -2.17 16 20 C 0.06 1.23 5.54 86.22 0.48 1.71 16 21 N -0.62 -21.43 2.98 -837.71 -2.49 -23.93 16 22 C 0.71 28.22 8.21 179.05 1.47 29.69 16 23 O -0.63 -33.30 16.27 -4.00 -0.07 -33.37 16 24 N -0.64 -18.13 3.32 -909.43 -3.02 -21.15 16 25 C 0.12 2.93 6.88 86.73 0.60 3.52 16 26 C -0.12 -1.55 6.94 31.78 0.22 -1.33 16 27 C -0.13 -1.38 7.11 32.06 0.23 -1.15 16 28 C 0.08 1.26 4.83 86.93 0.42 1.68 16 29 C 0.15 6.10 5.29 86.37 0.46 6.55 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.85 6.58 -2.39 -0.02 1.84 16 32 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.84 6.24 -2.39 -0.01 2.82 16 36 H 0.07 2.63 7.36 -2.39 -0.02 2.61 16 37 H 0.07 1.93 7.98 -2.38 -0.02 1.91 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.32 7.42 -2.39 -0.02 1.30 16 41 H 0.14 2.25 2.46 -31.70 -0.08 2.17 16 42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.10 1.04 7.04 -2.39 -0.02 1.03 16 50 H 0.09 1.37 5.30 -2.39 -0.01 1.36 16 51 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.08 3.98 4.79 -2.38 -0.01 3.97 16 Total: -1.00 -78.66 387.28 2.62 -76.05 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.85 Total: 21.85 kcal Atomic # 6 Polarization: 32.15 SS G_CDS: 7.41 Total: 39.56 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -7.55 Total: -126.13 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -0.11 Total: -59.90 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -78.66 2.62 -76.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.766 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds