Wall clock time and date at job start Tue Mar 31 2020 20:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47298 * 2 1 4 4 C 1.50703 * 109.47197 * 240.00526 * 2 1 3 5 5 H 1.08003 * 119.99919 * 240.00115 * 4 2 1 6 6 C 1.37880 * 119.99901 * 60.26846 * 4 2 1 7 7 N 1.31506 * 120.00171 * 359.73034 * 6 4 2 8 8 Si 1.86800 * 119.99496 * 179.72852 * 6 4 2 9 9 H 1.48498 * 109.47307 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47050 * 120.00580 * 8 6 4 11 11 H 1.48504 * 109.46820 * 239.99930 * 8 6 4 12 12 N 1.46505 * 109.47338 * 120.00238 * 2 1 3 13 13 C 1.46498 * 119.99875 * 59.99968 * 12 2 1 14 14 C 1.34772 * 119.99735 * 239.99947 * 12 2 1 15 15 O 1.21288 * 120.00467 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99871 * 180.02562 * 14 12 2 17 17 H 1.09003 * 109.49929 * 299.93743 * 16 14 12 18 18 C 1.53036 * 109.50086 * 179.83786 * 16 14 12 19 19 C 1.53040 * 109.54113 * 178.68125 * 18 16 14 20 20 C 1.53192 * 109.31047 * 61.36844 * 19 18 16 21 21 N 1.46928 * 108.77369 * 305.36265 * 20 19 18 22 22 C 1.34777 * 120.63164 * 233.58632 * 21 20 19 23 23 O 1.21592 * 119.99888 * 168.95939 * 22 21 20 24 24 N 1.34774 * 119.99909 * 348.96273 * 22 21 20 25 25 C 1.47017 * 125.64903 * 8.56592 * 24 22 21 26 26 C 1.54320 * 107.27619 * 180.97067 * 25 24 22 27 27 C 1.55154 * 102.86202 * 22.52449 * 26 25 24 28 28 C 1.47426 * 125.64583 * 188.87824 * 24 22 21 29 29 C 1.46927 * 118.73702 * 53.61420 * 21 20 19 30 30 H 1.08999 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46723 * 299.99314 * 1 2 3 32 32 H 1.08993 * 109.47260 * 59.99597 * 1 2 3 33 33 H 0.97002 * 120.00039 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46981 * 89.99915 * 13 12 2 35 35 H 1.08993 * 109.46894 * 210.00292 * 13 12 2 36 36 H 1.09002 * 109.46848 * 330.00083 * 13 12 2 37 37 H 1.08999 * 109.46280 * 298.70573 * 18 16 14 38 38 H 1.09002 * 109.46170 * 58.66305 * 18 16 14 39 39 H 1.08995 * 109.49815 * 301.41571 * 19 18 16 40 40 H 1.09006 * 109.52484 * 181.33304 * 19 18 16 41 41 H 1.08996 * 109.58496 * 185.58028 * 20 19 18 42 42 H 1.08996 * 109.59209 * 65.14958 * 20 19 18 43 43 H 1.09008 * 109.88116 * 300.51217 * 25 24 22 44 44 H 1.08995 * 109.88535 * 61.68143 * 25 24 22 45 45 H 1.08991 * 110.92281 * 264.10955 * 26 25 24 46 46 H 1.09000 * 110.74218 * 140.85344 * 26 25 24 47 47 H 1.09000 * 111.00601 * 206.22506 * 27 26 25 48 48 H 1.09004 * 111.03693 * 82.39505 * 27 26 25 49 49 H 1.09005 * 110.36425 * 274.66976 * 28 24 22 50 50 H 1.08996 * 110.36822 * 36.99100 * 28 24 22 51 51 H 1.09004 * 109.58887 * 186.60614 * 29 21 20 52 52 H 1.08997 * 109.70555 * 66.24572 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.7039 -0.2359 -2.4828 7 7 0.9478 0.8333 -2.6034 8 14 2.3329 -1.1120 -4.0080 9 1 3.1564 -2.2798 -3.6038 10 1 1.1812 -1.5769 -4.8221 11 1 3.1605 -0.1759 -4.8105 12 7 2.0184 -0.6907 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1257 1.8916 16 6 3.2961 -0.7463 3.3134 17 1 2.4489 -1.0885 3.9078 18 6 4.1497 0.2139 4.1449 19 6 4.6338 -0.4969 5.4109 20 6 5.5004 -1.6974 5.0178 21 7 4.7352 -2.5529 4.1006 22 6 4.5758 -3.8661 4.3584 23 8 3.7821 -4.5209 3.7105 24 7 5.2961 -4.4535 5.3343 25 6 6.1522 -3.7565 6.3053 26 6 6.7922 -4.8326 7.2074 27 6 6.7114 -6.1105 6.3313 28 6 5.3613 -5.9020 5.6009 29 6 4.1476 -1.9496 2.8966 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 0.7170 1.1673 -3.4844 34 1 2.4158 -2.7377 0.9715 35 1 1.6239 -2.2853 2.5000 36 1 0.6905 -2.3002 0.9845 37 1 5.0098 0.5364 3.5581 38 1 3.5531 1.0830 4.4222 39 1 3.7743 -0.8413 5.9859 40 1 5.2220 0.1944 6.0145 41 1 5.7659 -2.2641 5.9102 42 1 6.4058 -1.3478 4.5217 43 1 6.9290 -3.1992 5.7817 44 1 5.5504 -3.0784 6.9104 45 1 6.2215 -4.9590 8.1274 46 1 7.8295 -4.5826 7.4300 47 1 6.6865 -7.0076 6.9500 48 1 7.5375 -6.1511 5.6213 49 1 4.5330 -6.2077 6.2402 50 1 5.3458 -6.4610 4.6653 51 1 3.5204 -2.6828 2.3893 52 1 4.9411 -1.6209 2.2255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:12 Heat of formation + Delta-G solvation = -15.593754 kcal Electronic energy + Delta-G solvation = -31283.194138 eV Core-core repulsion = 27284.585824 eV Total energy + Delta-G solvation = -3998.608314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05234 -39.48467 -37.85191 -36.99584 -35.32323 -33.37312 -32.77917 -31.73914 -31.17001 -29.67942 -28.81143 -26.22006 -25.89029 -25.18297 -24.10745 -23.10360 -21.68375 -21.60084 -20.41074 -19.67241 -18.34200 -17.13927 -16.97352 -16.58538 -16.20523 -16.05192 -15.41074 -15.19934 -14.95427 -14.52561 -14.34759 -14.11664 -13.90293 -13.62145 -13.45041 -13.26534 -13.08144 -12.98013 -12.79874 -12.52314 -12.43535 -12.13746 -11.81180 -11.61884 -11.52664 -11.40114 -11.35341 -11.16980 -11.02621 -10.82107 -10.76563 -10.66033 -10.42486 -10.39562 -10.18707 -10.09394 -9.96009 -9.10968 -9.05554 -8.87436 -8.44695 -8.37355 -7.52605 -6.02826 -4.10224 2.35450 3.04998 3.29610 3.35923 3.38254 3.42844 3.56157 3.98690 4.06500 4.21225 4.42319 4.44295 4.69121 4.79229 4.80635 4.88444 4.91181 5.03488 5.11047 5.21426 5.27975 5.29163 5.30522 5.39616 5.44041 5.48514 5.49866 5.61380 5.68949 5.73514 5.78851 5.83287 5.89720 5.96506 6.03710 6.15070 6.25595 6.40400 6.43103 6.47565 6.82089 6.87552 6.87748 7.11144 7.48455 7.57218 7.76877 7.78134 8.06357 8.24562 8.46584 8.58616 8.88463 9.09630 9.56303 11.02577 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.002970 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.184249 B = 9426.751191 C =10360.826299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.590 5.590 13 C 0.084 3.916 14 C 0.510 3.490 15 O -0.551 6.551 16 C -0.120 4.120 17 H 0.093 0.907 18 C -0.098 4.098 19 C -0.133 4.133 20 C 0.045 3.955 21 N -0.620 5.620 22 C 0.726 3.274 23 O -0.581 6.581 24 N -0.640 5.640 25 C 0.094 3.906 26 C -0.136 4.136 27 C -0.134 4.134 28 C 0.126 3.874 29 C 0.129 3.871 30 H 0.030 0.970 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.262 0.738 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.130 0.870 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.111 0.889 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.644 -10.917 22.638 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.321 5.321 13 C -0.060 4.060 14 C 0.295 3.705 15 O -0.430 6.430 16 C -0.142 4.142 17 H 0.111 0.889 18 C -0.136 4.136 19 C -0.171 4.171 20 C -0.076 4.076 21 N -0.357 5.357 22 C 0.429 3.571 23 O -0.458 6.458 24 N -0.379 5.379 25 C -0.028 4.028 26 C -0.174 4.174 27 C -0.173 4.173 28 C 0.003 3.997 29 C 0.006 3.994 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.147 0.853 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.129 0.871 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.188 -10.518 21.910 26.756 hybrid contribution 0.238 -0.338 -0.918 1.007 sum 11.426 -10.856 20.992 26.250 Atomic orbital electron populations 1.22094 0.98278 0.99410 1.00786 1.18953 0.90865 0.94484 0.80030 0.91900 1.21373 1.31669 1.12808 0.90265 0.92191 1.24890 0.95003 0.94975 0.98957 1.69891 1.36615 1.22657 1.23572 0.86451 0.78638 0.79604 0.82789 1.19761 1.20958 1.20963 1.48266 1.48709 1.11665 1.23448 1.21710 1.01615 0.82992 0.99637 1.20152 0.79285 0.87009 0.84028 1.90641 1.58652 1.17075 1.76651 1.21674 0.99440 0.96560 0.96573 0.88929 1.21296 0.99953 0.97336 0.94991 1.21941 0.99993 0.97035 0.98148 1.23375 0.94587 0.93436 0.96222 1.47157 1.56513 1.06341 1.25672 1.15397 0.80459 0.81583 0.79651 1.90941 1.38212 1.63527 1.53123 1.47528 1.49391 1.07847 1.33173 1.22416 0.94003 0.95310 0.91102 1.22739 1.01654 0.94787 0.98209 1.22809 0.97351 0.98168 0.98935 1.22058 0.96975 0.80184 1.00523 1.21770 0.97356 0.94941 0.85334 0.95049 0.97017 0.88822 0.92808 0.92850 0.92602 0.90875 0.91054 0.90920 0.91772 0.90599 0.85348 0.91732 0.90520 0.90350 0.90377 0.89857 0.89681 0.90504 0.91639 0.90379 0.87093 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.95 37.16 0.33 -3.30 16 2 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.52 8.37 -34.44 -0.29 -14.81 16 5 H 0.06 1.66 7.65 -52.48 -0.40 1.26 16 6 C 0.06 1.78 5.31 -17.82 -0.09 1.69 16 7 N -0.89 -25.66 11.33 55.43 0.63 -25.03 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.59 -13.10 2.75 -175.26 -0.48 -13.59 16 13 C 0.08 1.58 8.04 59.85 0.48 2.06 16 14 C 0.51 10.79 7.08 -10.99 -0.08 10.71 16 15 O -0.55 -13.67 15.31 5.55 0.08 -13.59 16 16 C -0.12 -1.91 1.87 -91.65 -0.17 -2.09 16 17 H 0.09 1.42 7.41 -51.93 -0.38 1.03 16 18 C -0.10 -1.34 4.46 -26.69 -0.12 -1.46 16 19 C -0.13 -1.29 6.08 -26.61 -0.16 -1.46 16 20 C 0.05 0.43 5.25 -3.71 -0.02 0.41 16 21 N -0.62 -8.12 2.97 -178.50 -0.53 -8.65 16 22 C 0.73 10.33 8.33 -86.92 -0.72 9.61 16 23 O -0.58 -10.53 16.13 5.29 0.09 -10.45 16 24 N -0.64 -6.57 3.33 -218.89 -0.73 -7.30 16 25 C 0.09 0.59 4.87 -3.07 -0.01 0.57 16 26 C -0.14 -0.56 6.95 -24.90 -0.17 -0.73 16 27 C -0.13 -0.67 7.08 -24.58 -0.17 -0.85 16 28 C 0.13 1.05 6.88 -2.53 -0.02 1.03 16 29 C 0.13 2.00 5.29 -3.71 -0.02 1.98 16 30 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 2.52 6.08 -51.93 -0.32 2.20 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.05 1.00 7.07 -51.93 -0.37 0.64 16 35 H 0.06 0.92 5.95 -51.93 -0.31 0.61 16 36 H 0.07 1.38 6.43 -51.93 -0.33 1.04 16 37 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 38 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.13 0.90 1.88 -102.38 -0.19 0.70 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.44 6.59 -51.92 -0.34 0.10 16 44 H 0.08 0.43 6.68 -51.93 -0.35 0.08 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.76 8.12 -51.93 -0.42 0.33 16 51 H 0.11 1.90 3.59 -51.93 -0.19 1.72 16 52 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 387.05 15.07 5.83 5.83 Total: -1.00 -34.62 387.05 -10.06 -44.68 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.51 Total: 1.54 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.42 Total: 9.95 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -1.11 Total: -54.56 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.62 -10.06 -44.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.088 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds