Wall clock time and date at job start Tue Mar 31 2020 20:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47298 * 2 1 4 4 C 1.50703 * 109.47197 * 240.00526 * 2 1 3 5 5 H 1.08003 * 119.99919 * 240.00115 * 4 2 1 6 6 C 1.37880 * 119.99901 * 60.26846 * 4 2 1 7 7 N 1.31506 * 120.00171 * 359.73034 * 6 4 2 8 8 Si 1.86800 * 119.99496 * 179.72852 * 6 4 2 9 9 H 1.48498 * 109.47307 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47050 * 120.00580 * 8 6 4 11 11 H 1.48504 * 109.46820 * 239.99930 * 8 6 4 12 12 N 1.46505 * 109.47338 * 120.00238 * 2 1 3 13 13 C 1.46498 * 119.99875 * 59.99968 * 12 2 1 14 14 C 1.34772 * 119.99735 * 239.99947 * 12 2 1 15 15 O 1.21288 * 120.00467 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99871 * 180.02562 * 14 12 2 17 17 H 1.09003 * 109.49929 * 299.93743 * 16 14 12 18 18 C 1.53036 * 109.50086 * 179.83786 * 16 14 12 19 19 C 1.53040 * 109.54113 * 178.68125 * 18 16 14 20 20 C 1.53192 * 109.31047 * 61.36844 * 19 18 16 21 21 N 1.46928 * 108.77369 * 305.36265 * 20 19 18 22 22 C 1.34777 * 120.63164 * 233.58632 * 21 20 19 23 23 O 1.21592 * 119.99888 * 168.95939 * 22 21 20 24 24 N 1.34774 * 119.99909 * 348.96273 * 22 21 20 25 25 C 1.47017 * 125.64903 * 8.56592 * 24 22 21 26 26 C 1.54320 * 107.27619 * 180.97067 * 25 24 22 27 27 C 1.55154 * 102.86202 * 22.52449 * 26 25 24 28 28 C 1.47426 * 125.64583 * 188.87824 * 24 22 21 29 29 C 1.46927 * 118.73702 * 53.61420 * 21 20 19 30 30 H 1.08999 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46723 * 299.99314 * 1 2 3 32 32 H 1.08993 * 109.47260 * 59.99597 * 1 2 3 33 33 H 0.97002 * 120.00039 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46981 * 89.99915 * 13 12 2 35 35 H 1.08993 * 109.46894 * 210.00292 * 13 12 2 36 36 H 1.09002 * 109.46848 * 330.00083 * 13 12 2 37 37 H 1.08999 * 109.46280 * 298.70573 * 18 16 14 38 38 H 1.09002 * 109.46170 * 58.66305 * 18 16 14 39 39 H 1.08995 * 109.49815 * 301.41571 * 19 18 16 40 40 H 1.09006 * 109.52484 * 181.33304 * 19 18 16 41 41 H 1.08996 * 109.58496 * 185.58028 * 20 19 18 42 42 H 1.08996 * 109.59209 * 65.14958 * 20 19 18 43 43 H 1.09008 * 109.88116 * 300.51217 * 25 24 22 44 44 H 1.08995 * 109.88535 * 61.68143 * 25 24 22 45 45 H 1.08991 * 110.92281 * 264.10955 * 26 25 24 46 46 H 1.09000 * 110.74218 * 140.85344 * 26 25 24 47 47 H 1.09000 * 111.00601 * 206.22506 * 27 26 25 48 48 H 1.09004 * 111.03693 * 82.39505 * 27 26 25 49 49 H 1.09005 * 110.36425 * 274.66976 * 28 24 22 50 50 H 1.08996 * 110.36822 * 36.99100 * 28 24 22 51 51 H 1.09004 * 109.58887 * 186.60614 * 29 21 20 52 52 H 1.08997 * 109.70555 * 66.24572 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.7039 -0.2359 -2.4828 7 7 0.9478 0.8333 -2.6034 8 14 2.3329 -1.1120 -4.0080 9 1 3.1564 -2.2798 -3.6038 10 1 1.1812 -1.5769 -4.8221 11 1 3.1605 -0.1759 -4.8105 12 7 2.0184 -0.6907 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1257 1.8916 16 6 3.2961 -0.7463 3.3134 17 1 2.4489 -1.0885 3.9078 18 6 4.1497 0.2139 4.1449 19 6 4.6338 -0.4969 5.4109 20 6 5.5004 -1.6974 5.0178 21 7 4.7352 -2.5529 4.1006 22 6 4.5758 -3.8661 4.3584 23 8 3.7821 -4.5209 3.7105 24 7 5.2961 -4.4535 5.3343 25 6 6.1522 -3.7565 6.3053 26 6 6.7922 -4.8326 7.2074 27 6 6.7114 -6.1105 6.3313 28 6 5.3613 -5.9020 5.6009 29 6 4.1476 -1.9496 2.8966 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 0.7170 1.1673 -3.4844 34 1 2.4158 -2.7377 0.9715 35 1 1.6239 -2.2853 2.5000 36 1 0.6905 -2.3002 0.9845 37 1 5.0098 0.5364 3.5581 38 1 3.5531 1.0830 4.4222 39 1 3.7743 -0.8413 5.9859 40 1 5.2220 0.1944 6.0145 41 1 5.7659 -2.2641 5.9102 42 1 6.4058 -1.3478 4.5217 43 1 6.9290 -3.1992 5.7817 44 1 5.5504 -3.0784 6.9104 45 1 6.2215 -4.9590 8.1274 46 1 7.8295 -4.5826 7.4300 47 1 6.6865 -7.0076 6.9500 48 1 7.5375 -6.1511 5.6213 49 1 4.5330 -6.2077 6.2402 50 1 5.3458 -6.4610 4.6653 51 1 3.5204 -2.6828 2.3893 52 1 4.9411 -1.6209 2.2255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171550559.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:11 Heat of formation + Delta-G solvation = -37.985767 kcal Electronic energy + Delta-G solvation = -31284.165129 eV Core-core repulsion = 27284.585824 eV Total energy + Delta-G solvation = -3999.579305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05658 -40.95833 -38.76608 -38.13266 -37.19689 -35.00914 -34.19757 -32.81640 -32.08976 -31.04557 -29.89034 -27.85205 -27.33190 -26.84379 -25.37890 -23.94095 -22.99563 -22.18611 -21.69453 -20.66855 -19.98432 -18.60861 -18.11811 -17.81459 -17.65337 -17.35300 -16.97231 -16.61240 -16.09323 -15.79920 -15.49631 -15.35414 -14.86083 -14.80394 -14.55013 -14.50681 -14.20233 -14.09239 -13.91015 -13.83219 -13.62584 -13.44885 -13.16510 -13.01601 -12.95289 -12.76009 -12.67205 -12.49879 -12.46073 -12.22709 -12.14469 -12.08417 -11.92234 -11.62538 -11.53679 -11.42396 -11.18464 -10.83224 -10.61710 -10.48356 -10.01263 -9.40546 -9.32430 -8.17478 -6.33718 1.36997 1.38028 1.39769 1.51258 1.74079 2.03531 2.26502 2.44754 2.74543 3.10160 3.51053 3.61432 3.65992 3.74885 3.80235 4.01602 4.04553 4.13142 4.17147 4.30004 4.34167 4.45254 4.50516 4.50970 4.56226 4.61337 4.69381 4.74151 4.75388 4.84367 4.86226 4.89108 4.95816 4.98121 5.02079 5.02623 5.04605 5.15007 5.18455 5.29062 5.36140 5.39130 5.42587 5.47847 5.57941 5.63764 5.95679 5.99056 6.13195 6.73521 6.75533 6.86657 7.26219 7.42452 7.43777 8.87248 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016562 B = 0.002970 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.184249 B = 9426.751191 C =10360.826299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.282 1.282 12 N -0.597 5.597 13 C 0.090 3.910 14 C 0.501 3.499 15 O -0.594 6.594 16 C -0.104 4.104 17 H 0.105 0.895 18 C -0.097 4.097 19 C -0.122 4.122 20 C 0.040 3.960 21 N -0.619 5.619 22 C 0.716 3.284 23 O -0.631 6.631 24 N -0.638 5.638 25 C 0.080 3.920 26 C -0.125 4.125 27 C -0.125 4.125 28 C 0.116 3.884 29 C 0.137 3.863 30 H 0.045 0.955 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.265 0.735 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.162 0.838 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.094 0.906 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.447 -12.521 25.407 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.031 0.969 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.198 1.198 11 H -0.207 1.207 12 N -0.327 5.327 13 C -0.052 4.052 14 C 0.290 3.710 15 O -0.476 6.476 16 C -0.126 4.126 17 H 0.123 0.877 18 C -0.135 4.135 19 C -0.160 4.160 20 C -0.080 4.080 21 N -0.355 5.355 22 C 0.420 3.580 23 O -0.512 6.512 24 N -0.377 5.377 25 C -0.041 4.041 26 C -0.163 4.163 27 C -0.163 4.163 28 C -0.007 4.007 29 C 0.013 3.987 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.178 0.822 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.073 0.927 51 H 0.112 0.888 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.030 -12.146 24.750 30.494 hybrid contribution -0.297 0.174 -1.742 1.775 sum 12.733 -11.972 23.008 28.894 Atomic orbital electron populations 1.21889 0.97149 1.00059 1.00099 1.18574 0.91681 0.92269 0.81563 0.96879 1.21579 1.31984 1.12858 0.91273 0.92587 1.25709 0.95070 0.95616 1.01912 1.70017 1.37308 1.23757 1.24419 0.85423 0.78302 0.78453 0.78947 1.19320 1.19829 1.20748 1.48264 1.48966 1.12899 1.22604 1.21787 1.01329 0.80804 1.01284 1.21102 0.78214 0.86681 0.85050 1.90608 1.59959 1.19178 1.77866 1.21599 1.00193 0.96750 0.94069 0.87710 1.21320 0.98824 0.96908 0.96417 1.21923 1.00678 0.97257 0.96112 1.23775 0.94185 0.93212 0.96805 1.47112 1.56532 1.06545 1.25284 1.15638 0.80583 0.81602 0.80199 1.90895 1.40531 1.64633 1.55161 1.47614 1.48580 1.08918 1.32539 1.22733 0.94037 0.96437 0.90899 1.22746 1.02933 0.92889 0.97691 1.22790 0.94835 0.99754 0.98934 1.22253 0.99386 0.79066 0.99964 1.21436 0.96700 0.94155 0.86457 0.93581 0.95989 0.91133 0.92549 0.93109 0.90051 0.90884 0.92445 0.91906 0.91140 0.87341 0.82156 0.91033 0.89441 0.88653 0.89128 0.87636 0.87691 0.90676 0.91399 0.92679 0.88829 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 8.95 71.98 0.64 -6.13 16 2 C 0.26 14.30 2.63 44.25 0.12 14.42 16 3 H 0.01 0.85 6.90 -2.38 -0.02 0.84 16 4 C -0.54 -30.80 8.37 25.60 0.21 -30.58 16 5 H 0.06 3.17 7.65 -2.91 -0.02 3.15 16 6 C 0.02 0.94 5.31 84.66 0.45 1.39 16 7 N -0.92 -54.25 11.33 21.45 0.24 -54.01 16 8 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 N -0.60 -27.42 2.75 -826.78 -2.28 -29.70 16 13 C 0.09 3.44 8.04 127.77 1.03 4.46 16 14 C 0.50 22.01 7.08 87.66 0.62 22.63 16 15 O -0.59 -31.00 15.31 -3.05 -0.05 -31.05 16 16 C -0.10 -3.32 1.87 -11.46 -0.02 -3.34 16 17 H 0.10 3.11 7.41 -2.39 -0.02 3.09 16 18 C -0.10 -2.57 4.46 30.62 0.14 -2.43 16 19 C -0.12 -1.99 6.08 30.67 0.19 -1.80 16 20 C 0.04 0.63 5.25 86.36 0.45 1.09 16 21 N -0.62 -15.43 2.97 -836.90 -2.49 -17.91 16 22 C 0.72 19.84 8.33 179.05 1.49 21.33 16 23 O -0.63 -23.24 16.13 -4.00 -0.06 -23.31 16 24 N -0.64 -11.87 3.33 -964.69 -3.21 -15.08 16 25 C 0.08 0.68 4.87 86.73 0.42 1.11 16 26 C -0.12 -0.45 6.95 31.78 0.22 -0.23 16 27 C -0.13 -0.86 7.08 31.99 0.23 -0.63 16 28 C 0.12 1.78 6.88 86.85 0.60 2.38 16 29 C 0.14 4.28 5.29 86.36 0.46 4.73 16 30 H 0.05 2.14 6.66 -2.39 -0.02 2.13 16 31 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 3.92 6.08 -2.39 -0.01 3.90 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.05 1.96 7.07 -2.39 -0.02 1.94 16 35 H 0.08 2.66 5.95 -2.39 -0.01 2.64 16 36 H 0.07 2.75 6.43 -2.39 -0.02 2.74 16 37 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 38 H 0.06 1.79 8.07 -2.39 -0.02 1.77 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.16 1.55 1.88 -49.78 -0.09 1.46 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 43 H 0.09 0.63 6.59 -2.38 -0.02 0.61 16 44 H 0.10 0.56 6.68 -2.39 -0.02 0.55 16 45 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 49 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 51 H 0.09 3.28 3.59 -2.38 -0.01 3.27 16 52 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -80.27 387.05 2.26 -78.01 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.83 Total: 17.75 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 7.24 Total: 28.39 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -7.73 Total: -116.70 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -0.11 Total: -54.35 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -80.27 2.26 -78.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550559.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.021 kcal (2) G-P(sol) polarization free energy of solvation -80.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds