Wall clock time and date at job start Tue Mar 31 2020 20:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47416 * 2 1 4 4 C 1.50697 * 109.47245 * 239.99723 * 2 1 3 5 5 H 1.08002 * 119.99801 * 240.00243 * 4 2 1 6 6 C 1.37873 * 120.00121 * 60.00399 * 4 2 1 7 7 N 1.31511 * 119.99917 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00057 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47337 * 89.99564 * 8 6 4 10 10 H 1.48504 * 109.47067 * 210.00231 * 8 6 4 11 11 H 1.48499 * 109.46962 * 329.99428 * 8 6 4 12 12 N 1.46510 * 109.46838 * 119.99740 * 2 1 3 13 13 C 1.46495 * 119.99943 * 60.00094 * 12 2 1 14 14 C 1.34776 * 119.99893 * 240.00271 * 12 2 1 15 15 O 1.21284 * 119.99861 * 359.97438 * 14 12 2 16 16 C 1.50693 * 119.99945 * 180.02562 * 14 12 2 17 17 H 1.08999 * 109.50300 * 60.05812 * 16 14 12 18 18 C 1.53042 * 109.49970 * 180.15857 * 16 14 12 19 19 C 1.53037 * 109.54085 * 181.31038 * 18 16 14 20 20 C 1.53623 * 109.24503 * 298.51722 * 19 18 16 21 21 N 1.46929 * 108.54507 * 54.84979 * 20 19 18 22 22 C 1.34779 * 120.62792 * 126.37303 * 21 20 19 23 23 O 1.21581 * 120.00058 * 167.51896 * 22 21 20 24 24 N 1.34778 * 120.00124 * 347.52102 * 22 21 20 25 25 C 1.47029 * 125.64687 * 6.31996 * 24 22 21 26 26 C 1.54318 * 107.27376 * 180.96927 * 25 24 22 27 27 C 1.55156 * 102.86227 * 22.53300 * 26 25 24 28 28 C 1.47417 * 125.65128 * 186.63807 * 24 22 21 29 29 C 1.46924 * 118.73863 * 306.09665 * 21 20 19 30 30 H 1.08997 * 109.47387 * 300.00309 * 1 2 3 31 31 H 1.09000 * 109.46746 * 60.00321 * 1 2 3 32 32 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 33 33 H 0.97006 * 119.99988 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47213 * 269.99997 * 13 12 2 35 35 H 1.09000 * 109.47455 * 29.99782 * 13 12 2 36 36 H 1.09000 * 109.47409 * 150.00245 * 13 12 2 37 37 H 1.09001 * 109.46060 * 301.33703 * 18 16 14 38 38 H 1.09009 * 109.45724 * 61.29229 * 18 16 14 39 39 H 1.09003 * 109.49345 * 58.58647 * 19 18 16 40 40 H 1.08997 * 109.49811 * 178.64935 * 19 18 16 41 41 H 1.09004 * 109.73844 * 295.11637 * 20 19 18 42 42 H 1.09000 * 109.66606 * 174.55120 * 20 19 18 43 43 H 1.08995 * 109.88509 * 300.51650 * 25 24 22 44 44 H 1.08998 * 109.87549 * 61.68464 * 25 24 22 45 45 H 1.08997 * 110.92347 * 264.11766 * 26 25 24 46 46 H 1.08997 * 110.58272 * 140.78648 * 26 25 24 47 47 H 1.09001 * 111.00163 * 206.23070 * 27 26 25 48 48 H 1.09001 * 111.01034 * 82.37290 * 27 26 25 49 49 H 1.09006 * 110.36119 * 274.67031 * 28 24 22 50 50 H 1.09004 * 110.36802 * 36.98577 * 28 24 22 51 51 H 1.09001 * 109.58593 * 173.64705 * 29 21 20 52 52 H 1.09000 * 109.58435 * 293.93027 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3430 -2.1619 -4.4117 10 1 2.4869 -0.1416 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0835 15 8 3.0864 1.1255 1.8913 16 6 3.2958 -0.7460 3.3137 17 1 3.9025 -1.6017 3.0173 18 6 4.1427 0.2166 4.1493 19 6 4.6807 -0.5132 5.3822 20 6 3.5011 -0.9907 6.2428 21 7 2.6085 -1.8017 5.4035 22 6 2.2540 -3.0461 5.7810 23 8 1.3481 -3.6201 5.2083 24 7 2.9036 -3.6540 6.7933 25 6 3.9217 -3.0334 7.6535 26 6 4.3991 -4.1112 8.6495 27 6 4.0406 -5.4349 7.9239 28 6 2.7159 -5.0534 7.2174 29 6 2.1050 -1.2282 4.1481 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7084 1.1607 -3.4845 34 1 0.7375 -2.1443 1.9994 35 1 1.5294 -2.5969 0.4710 36 1 2.4627 -2.5818 1.9866 37 1 4.9772 0.5803 3.5497 38 1 3.5284 1.0597 4.4657 39 1 5.2747 -1.3710 5.0668 40 1 5.3033 0.1662 5.9643 41 1 2.9560 -0.1300 6.6304 42 1 3.8721 -1.5941 7.0713 43 1 4.7595 -2.6891 7.0472 44 1 3.4862 -2.1954 8.1978 45 1 3.8629 -4.0322 9.5951 46 1 5.4750 -4.0372 8.8075 47 1 3.8834 -6.2423 8.6391 48 1 4.8078 -5.7025 7.1973 49 1 1.8795 -5.1302 7.9122 50 1 2.5501 -5.6934 6.3507 51 1 1.5544 -1.9885 3.5940 52 1 1.4464 -0.3881 4.3685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550567.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:18 Heat of formation + Delta-G solvation = -13.390039 kcal Electronic energy + Delta-G solvation = -31294.181727 eV Core-core repulsion = 27295.668974 eV Total energy + Delta-G solvation = -3998.512754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09958 -39.49633 -37.85738 -37.04187 -35.33318 -33.38180 -32.78457 -31.77175 -31.20395 -29.69247 -28.81429 -26.22759 -25.91556 -25.18061 -24.11372 -23.09766 -21.75857 -21.62026 -20.44630 -19.67419 -18.36191 -17.30329 -16.86574 -16.53789 -16.25412 -16.10228 -15.37684 -15.31207 -14.94343 -14.55013 -14.28489 -14.19196 -14.01969 -13.65323 -13.50723 -13.28436 -13.03278 -12.83218 -12.75253 -12.60482 -12.40152 -12.11297 -11.82981 -11.63456 -11.53539 -11.43999 -11.41366 -11.19826 -11.04832 -10.83976 -10.79071 -10.70839 -10.42559 -10.35884 -10.22725 -10.12940 -9.96329 -9.14417 -9.06946 -8.88101 -8.47847 -8.38505 -7.54354 -6.04148 -4.11926 2.33154 3.02853 3.28733 3.34657 3.36491 3.39677 3.53981 3.96858 4.04065 4.20410 4.42016 4.42846 4.68312 4.76470 4.78331 4.84583 4.89703 5.00597 5.08161 5.19349 5.26300 5.27987 5.29230 5.38650 5.42074 5.46671 5.49062 5.59169 5.66576 5.72343 5.78334 5.79323 5.85708 5.95398 6.00144 6.11859 6.22976 6.37681 6.42392 6.49597 6.81373 6.85075 6.89503 7.11698 7.46550 7.57686 7.75266 7.76030 8.05657 8.23767 8.44033 8.57054 8.86160 9.08135 9.54363 11.01152 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.002798 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.883641 B =10006.219380 C =10578.364641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.510 3.490 15 O -0.551 6.551 16 C -0.121 4.121 17 H 0.093 0.907 18 C -0.097 4.097 19 C -0.132 4.132 20 C 0.037 3.963 21 N -0.620 5.620 22 C 0.726 3.274 23 O -0.582 6.582 24 N -0.639 5.639 25 C 0.093 3.907 26 C -0.136 4.136 27 C -0.134 4.134 28 C 0.125 3.875 29 C 0.131 3.869 30 H 0.011 0.989 31 H 0.093 0.907 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.109 0.891 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.755 -9.876 24.957 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.296 3.704 15 O -0.429 6.429 16 C -0.143 4.143 17 H 0.111 0.889 18 C -0.135 4.135 19 C -0.171 4.171 20 C -0.084 4.084 21 N -0.357 5.357 22 C 0.429 3.571 23 O -0.459 6.459 24 N -0.378 5.378 25 C -0.030 4.030 26 C -0.174 4.174 27 C -0.173 4.173 28 C 0.002 3.998 29 C 0.008 3.992 30 H 0.030 0.970 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.152 0.848 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.127 0.873 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.228 -9.416 24.273 27.021 hybrid contribution 0.327 -0.367 -0.962 1.081 sum 7.555 -9.784 23.311 26.386 Atomic orbital electron populations 1.22080 0.98152 0.99487 1.00760 1.18943 0.90910 0.94469 0.79935 0.91919 1.21325 1.31772 1.12953 0.90337 0.92267 1.24889 0.94978 0.94972 0.98943 1.69884 1.36391 1.22619 1.23702 0.86497 0.79186 0.79302 0.82422 1.20603 1.21121 1.19960 1.48264 1.48665 1.11603 1.23508 1.21748 0.98958 0.83240 1.02346 1.20136 0.79326 0.86981 0.83984 1.90642 1.58346 1.16983 1.76963 1.21690 0.98190 0.99861 0.94594 0.88893 1.21291 0.99791 0.97261 0.95196 1.22001 0.97289 1.00538 0.97240 1.23579 0.91699 0.97120 0.96012 1.47135 1.51354 1.13609 1.23608 1.15400 0.81442 0.80876 0.79365 1.90938 1.31170 1.65953 1.57841 1.47548 1.42799 1.13294 1.34201 1.22367 0.91931 0.96001 0.92667 1.22749 1.02069 0.94373 0.98200 1.22811 0.97208 0.97469 0.99765 1.22066 0.97205 0.81260 0.99264 1.21745 0.94687 0.99636 0.83118 0.97014 0.88868 0.95100 0.92716 0.93308 0.90061 0.92745 0.90816 0.91109 0.91710 0.90629 0.91758 0.84783 0.90255 0.90362 0.90346 0.89820 0.89660 0.90448 0.91671 0.90299 0.87328 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.97 37.16 0.33 -3.29 16 2 C 0.26 6.75 2.64 -69.08 -0.18 6.57 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.54 16 4 C -0.53 -14.50 7.99 -34.44 -0.28 -14.78 16 5 H 0.06 1.61 7.33 -52.49 -0.38 1.23 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.59 -13.02 2.75 -175.26 -0.48 -13.50 16 13 C 0.08 1.49 7.79 59.84 0.47 1.96 16 14 C 0.51 10.75 7.08 -10.99 -0.08 10.67 16 15 O -0.55 -13.62 15.31 5.55 0.09 -13.54 16 16 C -0.12 -1.90 1.87 -91.65 -0.17 -2.07 16 17 H 0.09 1.42 7.41 -51.93 -0.38 1.04 16 18 C -0.10 -1.32 4.46 -26.69 -0.12 -1.44 16 19 C -0.13 -1.25 5.94 -26.39 -0.16 -1.41 16 20 C 0.04 0.35 5.65 -3.48 -0.02 0.33 16 21 N -0.62 -7.94 2.97 -178.23 -0.53 -8.47 16 22 C 0.73 10.15 8.32 -86.91 -0.72 9.43 16 23 O -0.58 -10.42 16.16 5.29 0.09 -10.33 16 24 N -0.64 -6.43 3.33 -226.48 -0.75 -7.18 16 25 C 0.09 0.56 4.85 -3.06 -0.01 0.55 16 26 C -0.14 -0.54 6.95 -24.90 -0.17 -0.71 16 27 C -0.13 -0.65 7.08 -24.58 -0.17 -0.83 16 28 C 0.13 1.02 6.89 -2.53 -0.02 1.01 16 29 C 0.13 1.96 5.24 -3.71 -0.02 1.94 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 32 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.05 0.85 7.07 -51.93 -0.37 0.48 16 35 H 0.08 1.58 7.02 -51.93 -0.36 1.21 16 36 H 0.05 0.89 5.95 -51.93 -0.31 0.58 16 37 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 38 H 0.07 1.02 8.13 -51.92 -0.42 0.59 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.14 0.91 1.53 -110.47 -0.17 0.74 16 43 H 0.08 0.45 6.60 -51.93 -0.34 0.11 16 44 H 0.08 0.41 6.74 -51.93 -0.35 0.06 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 51 H 0.11 1.78 3.69 -51.93 -0.19 1.59 16 52 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -34.58 387.72 -10.12 -44.70 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -8.56 Total: 1.37 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.42 Total: 9.62 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -1.14 Total: -54.08 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.17 Total: -23.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.58 -10.12 -44.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550567.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.311 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds