Wall clock time and date at job start Tue Mar 31 2020 19:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47356 * 2 1 4 4 O 1.42903 * 109.47379 * 119.99913 * 2 1 3 5 5 C 1.53001 * 109.47309 * 240.00131 * 2 1 3 6 6 C 1.53001 * 109.47305 * 175.61222 * 5 2 1 7 7 H 1.08994 * 109.45591 * 55.91086 * 6 5 2 8 8 C 1.53039 * 109.46085 * 295.94059 * 6 5 2 9 9 C 1.53123 * 109.27964 * 180.80692 * 8 6 5 10 10 C 1.53113 * 109.15933 * 57.65323 * 9 8 6 11 11 C 1.53044 * 109.27862 * 302.34605 * 10 9 8 12 12 N 1.46841 * 109.52287 * 59.18070 * 11 10 9 13 13 C 1.46897 * 110.99942 * 174.15888 * 12 11 10 14 14 C 1.50701 * 109.46965 * 65.50402 * 13 12 11 15 15 O 1.21283 * 120.00043 * 354.48322 * 14 13 12 16 16 N 1.34777 * 119.99960 * 174.47891 * 14 13 12 17 17 C 1.46499 * 119.99938 * 184.57312 * 16 14 13 18 18 C 1.50699 * 109.47250 * 269.99941 * 17 16 14 19 19 H 1.08003 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00414 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99767 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00298 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47411 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47290 * 120.00157 * 22 20 18 25 25 H 1.48498 * 109.47030 * 239.99580 * 22 20 18 26 26 C 1.46500 * 120.00226 * 4.57716 * 16 14 13 27 27 C 1.53005 * 109.47124 * 271.84284 * 26 16 14 28 28 C 1.47191 * 109.47425 * 174.90067 * 27 26 16 29 29 N 7.30760 * 76.65585 * 208.36921 * 2 1 3 30 30 H 1.08996 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46932 * 300.00456 * 1 2 3 32 32 H 1.08996 * 109.46845 * 60.00141 * 1 2 3 33 33 H 0.96693 * 113.99852 * 64.88361 * 4 2 1 34 34 H 1.08996 * 109.47253 * 55.60450 * 5 2 1 35 35 H 1.09007 * 109.46734 * 295.60740 * 5 2 1 36 36 H 1.08998 * 109.50310 * 60.86085 * 8 6 5 37 37 H 1.09007 * 109.53476 * 300.76700 * 8 6 5 38 38 H 1.09000 * 109.51586 * 297.74735 * 9 8 6 39 39 H 1.08993 * 109.57258 * 177.58806 * 9 8 6 40 40 H 1.08997 * 109.50091 * 182.40697 * 10 9 8 41 41 H 1.09000 * 109.53822 * 62.31020 * 10 9 8 42 42 H 1.09001 * 109.45791 * 299.16046 * 11 10 9 43 43 H 1.09002 * 109.46142 * 179.19824 * 11 10 9 44 44 H 1.09005 * 109.47348 * 305.50402 * 13 12 11 45 45 H 1.08995 * 109.47365 * 185.50363 * 13 12 11 46 46 H 1.08994 * 109.47356 * 30.00496 * 17 16 14 47 47 H 1.09002 * 109.47039 * 150.00325 * 17 16 14 48 48 H 0.97004 * 120.00214 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.47468 * 151.84181 * 26 16 14 50 50 H 1.09005 * 109.46757 * 31.83567 * 26 16 14 51 51 H 1.09004 * 109.46832 * 294.89847 * 27 26 16 52 52 H 1.09004 * 109.47151 * 54.89043 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 6 3.5661 -0.6263 -1.3056 7 1 3.9890 -1.0273 -0.3846 8 6 3.9804 0.8386 -1.4615 9 6 5.5072 0.9268 -1.5378 10 6 6.0021 0.0725 -2.7081 11 6 5.5291 -1.3703 -2.5160 12 7 4.0625 -1.4012 -2.4499 13 6 3.5667 -2.7832 -2.4048 14 6 4.0088 -3.4338 -1.1194 15 8 4.7539 -2.8437 -0.3661 16 7 3.5760 -4.6713 -0.8068 17 6 3.9239 -5.2639 0.4870 18 6 5.2197 -6.0228 0.3599 19 1 5.7330 -6.0595 -0.5897 20 6 5.7500 -6.6701 1.4556 21 7 5.1252 -6.6249 2.6120 22 14 7.3565 -7.6100 1.2982 23 1 7.8554 -7.5074 -0.0968 24 1 8.3608 -7.0329 2.2274 25 1 7.1301 -9.0376 1.6387 26 6 2.7578 -5.4240 -1.7609 27 6 1.2812 -5.0868 -1.5438 28 6 0.4697 -5.7469 -2.5792 29 7 -0.1566 -6.2564 -3.3785 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7840 -1.6142 1.1962 34 1 1.6139 -0.2549 -2.1375 35 1 1.7424 -1.7691 -1.2107 36 1 3.6252 1.4105 -0.6043 37 1 3.5464 1.2449 -2.3752 38 1 5.9402 0.5572 -0.6082 39 1 5.8058 1.9637 -1.6918 40 1 7.0913 0.0970 -2.7414 41 1 5.6005 0.4659 -3.6420 42 1 5.9430 -1.7677 -1.5893 43 1 5.8678 -1.9782 -3.3550 44 1 3.9678 -3.3410 -3.2511 45 1 2.4779 -2.7804 -2.4548 46 1 4.0366 -4.4743 1.2298 47 1 3.1327 -5.9458 0.7988 48 1 5.4980 -7.0806 3.3829 49 1 2.9127 -6.4921 -1.6091 50 1 3.0460 -5.1558 -2.7774 51 1 0.9695 -5.4370 -0.5597 52 1 1.1420 -4.0074 -1.6061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000318879753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:20 Heat of formation + Delta-G solvation = -63.774945 kcal Electronic energy + Delta-G solvation = -31804.015892 eV Core-core repulsion = 27803.318285 eV Total energy + Delta-G solvation = -4000.697607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.40361 -38.45322 -37.25879 -36.79050 -35.27321 -33.52049 -32.83198 -32.59130 -30.89964 -30.34278 -28.41048 -26.84938 -26.15363 -24.06454 -23.43691 -22.79244 -21.82369 -20.85534 -19.65176 -18.52736 -17.66426 -16.66871 -16.50282 -16.30611 -16.06455 -15.71467 -15.27292 -15.20960 -14.75291 -14.58924 -14.20023 -14.08670 -13.87790 -13.72510 -13.45662 -13.06744 -12.98996 -12.86644 -12.69740 -12.52116 -12.36118 -12.17387 -12.03568 -11.85953 -11.70368 -11.59389 -11.48538 -11.30532 -11.01966 -10.90409 -10.83391 -10.68405 -10.58474 -10.46736 -10.30768 -10.23024 -9.98464 -9.83258 -9.73724 -9.63374 -8.50586 -7.88480 -7.73488 -6.12002 -4.16303 2.67223 2.75328 3.19145 3.25551 3.34231 3.37308 3.61118 3.96108 4.15165 4.39307 4.44504 4.69505 4.84465 4.86449 4.99688 5.03345 5.03638 5.10882 5.13319 5.17298 5.22851 5.26650 5.35679 5.45296 5.51360 5.59865 5.60785 5.63818 5.71879 5.75361 5.84413 5.89011 5.94095 5.99163 6.03143 6.05277 6.11313 6.19542 6.26902 6.32308 6.47268 6.66070 6.85845 7.16315 7.27942 7.31666 7.39324 7.51773 7.75257 7.83927 8.14144 8.21211 8.79681 8.93912 9.49510 10.96080 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.004498 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.698253 B = 6224.113613 C = 7529.310017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 H 0.097 0.903 4 O -0.557 6.557 5 C -0.147 4.147 6 C 0.067 3.933 7 H 0.092 0.908 8 C -0.107 4.107 9 C -0.120 4.120 10 C -0.111 4.111 11 C 0.038 3.962 12 N -0.511 5.511 13 C 0.024 3.976 14 C 0.475 3.525 15 O -0.522 6.522 16 N -0.596 5.596 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.117 3.883 27 C -0.051 4.051 28 C 0.216 3.784 29 N -0.443 5.443 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.376 0.624 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.263 0.737 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.117 0.883 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 12.606 -9.016 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.041 3.959 3 H 0.115 0.885 4 O -0.363 6.363 5 C -0.185 4.185 6 C -0.041 4.041 7 H 0.110 0.890 8 C -0.145 4.145 9 C -0.158 4.158 10 C -0.149 4.149 11 C -0.089 4.089 12 N -0.234 5.234 13 C -0.107 4.107 14 C 0.261 3.739 15 O -0.399 6.399 16 N -0.328 5.328 17 C 0.126 3.874 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.009 4.009 27 C -0.092 4.092 28 C -0.103 4.103 29 N -0.120 5.120 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.223 0.777 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.063 0.937 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.114 0.886 50 H 0.092 0.908 51 H 0.135 0.865 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.710 12.923 -9.897 18.011 hybrid contribution 1.104 -1.487 0.758 2.001 sum -6.605 11.436 -9.140 16.061 Atomic orbital electron populations 1.22499 0.96858 1.02450 1.02349 1.21930 0.92280 0.96966 0.84725 0.88518 1.86609 1.80655 1.26691 1.42311 1.22452 0.96364 1.00933 0.98771 1.21877 0.93552 0.93742 0.94895 0.88994 1.21609 0.95848 0.95759 1.01286 1.21546 0.95981 0.99204 0.99070 1.21525 0.99709 0.95161 0.98520 1.22299 0.87336 0.96783 1.02504 1.62421 1.10225 1.08878 1.41890 1.22471 1.01798 0.90233 0.96241 1.21701 0.81517 0.82003 0.88720 1.90621 1.34794 1.62562 1.51923 1.48393 1.49835 1.15142 1.19461 1.19328 0.95726 0.93829 0.78516 1.21420 1.07196 1.31546 0.96318 0.92478 1.24905 0.97449 0.96490 0.95092 1.69923 1.39275 1.43491 1.00527 0.86488 0.83624 0.79382 0.78199 1.19847 1.20898 1.20997 1.21305 0.86694 0.99279 0.93646 1.19925 0.94120 1.00375 0.94784 1.29076 0.93666 0.93487 0.94032 1.81220 1.10094 1.09627 1.11054 0.92386 0.91993 0.91862 0.77697 0.90739 0.91826 0.91790 0.92004 0.91818 0.92473 0.92003 0.91911 0.90951 0.91730 0.88536 0.88454 0.93698 0.94928 0.92738 0.88619 0.90766 0.86513 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.56 37.16 0.36 -1.21 16 2 C 0.10 1.05 3.44 -26.73 -0.09 0.96 16 3 H 0.10 1.01 6.35 -51.93 -0.33 0.68 16 4 O -0.56 -7.46 12.79 -35.23 -0.45 -7.91 16 5 C -0.15 -1.54 4.05 -26.73 -0.11 -1.65 16 6 C 0.07 0.87 1.38 -67.72 -0.09 0.78 16 7 H 0.09 1.57 5.16 -51.93 -0.27 1.30 16 8 C -0.11 -1.25 5.09 -26.65 -0.14 -1.39 16 9 C -0.12 -1.44 6.00 -26.61 -0.16 -1.60 16 10 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 11 C 0.04 0.54 5.09 -3.83 -0.02 0.52 16 12 N -0.51 -6.67 4.69 -228.13 -1.07 -7.75 16 13 C 0.02 0.31 3.88 -4.98 -0.02 0.29 16 14 C 0.47 7.97 6.96 -10.98 -0.08 7.89 16 15 O -0.52 -10.99 11.27 5.56 0.06 -10.92 16 16 N -0.60 -10.07 2.46 -175.06 -0.43 -10.50 16 17 C 0.25 5.52 5.12 -5.19 -0.03 5.50 16 18 C -0.53 -13.70 9.39 -34.44 -0.32 -14.03 16 19 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 22 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.12 1.45 5.09 -4.04 -0.02 1.43 16 27 C -0.05 -0.48 5.93 -29.52 -0.18 -0.65 16 28 C 0.22 2.42 15.43 -20.76 -0.32 2.10 16 29 N -0.44 -6.20 18.54 42.16 0.78 -5.41 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 4.39 9.03 45.56 0.41 4.81 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.65 5.85 -51.92 -0.30 0.34 16 36 H 0.06 0.72 6.49 -51.93 -0.34 0.38 16 37 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.28 5.77 -51.93 -0.30 0.98 16 43 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 44 H 0.10 1.13 7.48 -51.93 -0.39 0.74 16 45 H 0.10 0.99 4.59 -51.93 -0.24 0.75 16 46 H 0.05 1.17 7.49 -51.93 -0.39 0.78 16 47 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.10 1.29 8.06 -51.93 -0.42 0.87 16 50 H 0.07 0.79 6.70 -51.93 -0.35 0.44 16 51 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 52 H 0.10 0.78 6.53 -51.93 -0.34 0.44 16 LS Contribution 405.03 15.07 6.10 6.10 Total: -1.00 -31.90 405.03 -8.62 -40.52 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.86 Total: 5.14 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.47 Total: -0.94 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.02 Total: -48.05 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.39 Total: -18.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.90 -8.62 -40.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318879753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.252 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds