Wall clock time and date at job start Tue Mar 31 2020 19:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47356 * 2 1 4 4 O 1.42903 * 109.47379 * 119.99913 * 2 1 3 5 5 C 1.53001 * 109.47309 * 240.00131 * 2 1 3 6 6 C 1.53001 * 109.47305 * 175.61222 * 5 2 1 7 7 H 1.08994 * 109.45591 * 55.91086 * 6 5 2 8 8 C 1.53039 * 109.46085 * 295.94059 * 6 5 2 9 9 C 1.53123 * 109.27964 * 180.80692 * 8 6 5 10 10 C 1.53113 * 109.15933 * 57.65323 * 9 8 6 11 11 C 1.53044 * 109.27862 * 302.34605 * 10 9 8 12 12 N 1.46841 * 109.52287 * 59.18070 * 11 10 9 13 13 C 1.46897 * 110.99942 * 174.15888 * 12 11 10 14 14 C 1.50701 * 109.46965 * 65.50402 * 13 12 11 15 15 O 1.21283 * 120.00043 * 354.48322 * 14 13 12 16 16 N 1.34777 * 119.99960 * 174.47891 * 14 13 12 17 17 C 1.46499 * 119.99938 * 184.57312 * 16 14 13 18 18 C 1.50699 * 109.47250 * 269.99941 * 17 16 14 19 19 H 1.08003 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00414 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99767 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00298 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47411 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47290 * 120.00157 * 22 20 18 25 25 H 1.48498 * 109.47030 * 239.99580 * 22 20 18 26 26 C 1.46500 * 120.00226 * 4.57716 * 16 14 13 27 27 C 1.53005 * 109.47124 * 271.84284 * 26 16 14 28 28 C 1.47191 * 109.47425 * 174.90067 * 27 26 16 29 29 N 7.30760 * 76.65585 * 208.36921 * 2 1 3 30 30 H 1.08996 * 109.46679 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46932 * 300.00456 * 1 2 3 32 32 H 1.08996 * 109.46845 * 60.00141 * 1 2 3 33 33 H 0.96693 * 113.99852 * 64.88361 * 4 2 1 34 34 H 1.08996 * 109.47253 * 55.60450 * 5 2 1 35 35 H 1.09007 * 109.46734 * 295.60740 * 5 2 1 36 36 H 1.08998 * 109.50310 * 60.86085 * 8 6 5 37 37 H 1.09007 * 109.53476 * 300.76700 * 8 6 5 38 38 H 1.09000 * 109.51586 * 297.74735 * 9 8 6 39 39 H 1.08993 * 109.57258 * 177.58806 * 9 8 6 40 40 H 1.08997 * 109.50091 * 182.40697 * 10 9 8 41 41 H 1.09000 * 109.53822 * 62.31020 * 10 9 8 42 42 H 1.09001 * 109.45791 * 299.16046 * 11 10 9 43 43 H 1.09002 * 109.46142 * 179.19824 * 11 10 9 44 44 H 1.09005 * 109.47348 * 305.50402 * 13 12 11 45 45 H 1.08995 * 109.47365 * 185.50363 * 13 12 11 46 46 H 1.08994 * 109.47356 * 30.00496 * 17 16 14 47 47 H 1.09002 * 109.47039 * 150.00325 * 17 16 14 48 48 H 0.97004 * 120.00214 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.47468 * 151.84181 * 26 16 14 50 50 H 1.09005 * 109.46757 * 31.83567 * 26 16 14 51 51 H 1.09004 * 109.46832 * 294.89847 * 27 26 16 52 52 H 1.09004 * 109.47151 * 54.89043 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 6 3.5661 -0.6263 -1.3056 7 1 3.9890 -1.0273 -0.3846 8 6 3.9804 0.8386 -1.4615 9 6 5.5072 0.9268 -1.5378 10 6 6.0021 0.0725 -2.7081 11 6 5.5291 -1.3703 -2.5160 12 7 4.0625 -1.4012 -2.4499 13 6 3.5667 -2.7832 -2.4048 14 6 4.0088 -3.4338 -1.1194 15 8 4.7539 -2.8437 -0.3661 16 7 3.5760 -4.6713 -0.8068 17 6 3.9239 -5.2639 0.4870 18 6 5.2197 -6.0228 0.3599 19 1 5.7330 -6.0595 -0.5897 20 6 5.7500 -6.6701 1.4556 21 7 5.1252 -6.6249 2.6120 22 14 7.3565 -7.6100 1.2982 23 1 7.8554 -7.5074 -0.0968 24 1 8.3608 -7.0329 2.2274 25 1 7.1301 -9.0376 1.6387 26 6 2.7578 -5.4240 -1.7609 27 6 1.2812 -5.0868 -1.5438 28 6 0.4697 -5.7469 -2.5792 29 7 -0.1566 -6.2564 -3.3785 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7840 -1.6142 1.1962 34 1 1.6139 -0.2549 -2.1375 35 1 1.7424 -1.7691 -1.2107 36 1 3.6252 1.4105 -0.6043 37 1 3.5464 1.2449 -2.3752 38 1 5.9402 0.5572 -0.6082 39 1 5.8058 1.9637 -1.6918 40 1 7.0913 0.0970 -2.7414 41 1 5.6005 0.4659 -3.6420 42 1 5.9430 -1.7677 -1.5893 43 1 5.8678 -1.9782 -3.3550 44 1 3.9678 -3.3410 -3.2511 45 1 2.4779 -2.7804 -2.4548 46 1 4.0366 -4.4743 1.2298 47 1 3.1327 -5.9458 0.7988 48 1 5.4980 -7.0806 3.3829 49 1 2.9127 -6.4921 -1.6091 50 1 3.0460 -5.1558 -2.7774 51 1 0.9695 -5.4370 -0.5597 52 1 1.1420 -4.0074 -1.6061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000318879753.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:19 Heat of formation + Delta-G solvation = -86.143572 kcal Electronic energy + Delta-G solvation = -31804.985868 eV Core-core repulsion = 27803.318285 eV Total energy + Delta-G solvation = -4001.667584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57849 -39.59119 -38.23409 -37.82506 -36.59569 -34.95730 -34.34942 -33.58388 -32.12951 -31.19584 -29.87693 -28.08432 -27.24641 -25.31984 -24.75881 -23.97162 -22.91048 -21.79730 -20.74577 -19.79110 -18.78353 -18.32886 -17.86033 -17.38206 -17.10803 -16.75827 -16.53767 -16.32322 -16.04543 -15.73883 -15.54680 -15.08166 -15.00480 -14.82581 -14.41227 -14.33373 -14.03469 -13.93899 -13.80135 -13.68383 -13.55838 -13.39441 -13.15293 -12.96010 -12.86566 -12.69257 -12.62071 -12.58063 -12.51146 -12.38507 -12.16570 -11.83285 -11.77055 -11.64944 -11.57011 -11.41289 -11.24298 -11.06684 -10.90162 -10.72571 -10.58888 -9.39740 -8.95581 -8.17834 -6.29185 1.36513 1.39689 1.49227 1.71293 1.86391 1.92209 2.33259 2.46347 2.93662 3.12468 3.17456 3.58706 3.82000 3.83071 3.94415 4.03091 4.11949 4.12983 4.17563 4.22617 4.31133 4.38703 4.46721 4.54686 4.61365 4.64309 4.72763 4.81053 4.83157 4.88475 4.92758 5.01328 5.04193 5.06524 5.08803 5.13574 5.19423 5.22212 5.29459 5.30353 5.36550 5.39340 5.46630 5.60779 5.68125 5.91845 6.09247 6.15502 6.20381 6.63001 6.77906 6.86434 6.86781 7.36564 7.58571 8.88391 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.004498 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.698253 B = 6224.113613 C = 7529.310017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.097 3.903 3 H 0.094 0.906 4 O -0.584 6.584 5 C -0.139 4.139 6 C 0.067 3.933 7 H 0.047 0.953 8 C -0.104 4.104 9 C -0.122 4.122 10 C -0.106 4.106 11 C 0.037 3.963 12 N -0.498 5.498 13 C 0.031 3.969 14 C 0.471 3.529 15 O -0.570 6.570 16 N -0.597 5.597 17 C 0.264 3.736 18 C -0.534 4.534 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.925 5.925 22 Si 0.952 3.048 23 H -0.270 1.270 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.113 3.887 27 C -0.037 4.037 28 C 0.245 3.755 29 N -0.487 5.487 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.379 0.621 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.132 0.868 46 H 0.003 0.997 47 H 0.032 0.968 48 H 0.264 0.736 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.124 0.876 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 13.401 -11.584 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.038 3.962 3 H 0.112 0.888 4 O -0.391 6.391 5 C -0.177 4.177 6 C -0.041 4.041 7 H 0.065 0.935 8 C -0.142 4.142 9 C -0.159 4.159 10 C -0.144 4.144 11 C -0.091 4.091 12 N -0.221 5.221 13 C -0.100 4.100 14 C 0.259 3.741 15 O -0.449 6.449 16 N -0.328 5.328 17 C 0.142 3.858 18 C -0.573 4.573 19 H 0.067 0.933 20 C -0.187 4.187 21 N -0.565 5.565 22 Si 0.778 3.222 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.012 4.012 27 C -0.078 4.078 28 C -0.072 4.072 29 N -0.165 5.165 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.227 0.773 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.149 0.851 46 H 0.021 0.979 47 H 0.050 0.950 48 H 0.073 0.927 49 H 0.102 0.898 50 H 0.119 0.881 51 H 0.142 0.858 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.035 13.711 -12.509 20.642 hybrid contribution 1.558 -1.694 1.587 2.796 sum -7.477 12.017 -10.922 17.877 Atomic orbital electron populations 1.22423 0.94886 1.03129 1.03005 1.22068 0.93769 0.96505 0.83829 0.88771 1.86588 1.81396 1.27146 1.43999 1.22403 0.94234 1.01533 0.99536 1.21813 0.95215 0.94219 0.92840 0.93506 1.21602 0.95453 0.94969 1.02177 1.21555 0.96401 1.00231 0.97731 1.21499 1.00083 0.93702 0.99069 1.22265 0.88056 0.98195 1.00544 1.62534 1.09383 1.08893 1.41241 1.22654 1.03787 0.89700 0.93854 1.22563 0.80465 0.81439 0.89611 1.90640 1.36870 1.63673 1.53741 1.48252 1.50595 1.15601 1.18364 1.18726 0.94427 0.92021 0.80620 1.21763 1.08421 1.31312 0.95809 0.93302 1.25663 1.00415 0.97617 0.94977 1.70021 1.40761 1.44613 1.01134 0.85592 0.79941 0.78575 0.78050 1.19415 1.21316 1.19852 1.21500 0.87888 0.98180 0.93666 1.19849 0.91518 1.01950 0.94508 1.29117 0.92717 0.92240 0.93159 1.81267 1.11567 1.11129 1.12571 0.91695 0.92533 0.90001 0.77339 0.88528 0.91295 0.91765 0.90084 0.94917 0.90458 0.91615 0.90090 0.95305 0.90938 0.86674 0.85068 0.97933 0.94995 0.92704 0.89817 0.88105 0.85820 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.56 71.98 0.69 -1.87 16 2 C 0.10 1.90 3.44 30.59 0.11 2.00 16 3 H 0.09 1.86 6.35 -2.39 -0.02 1.84 16 4 O -0.58 -15.94 12.79 -148.98 -1.91 -17.85 16 5 C -0.14 -2.57 4.05 30.59 0.12 -2.44 16 6 C 0.07 1.68 1.38 44.94 0.06 1.74 16 7 H 0.05 1.67 5.16 -2.39 -0.01 1.66 16 8 C -0.10 -2.29 5.09 30.65 0.16 -2.14 16 9 C -0.12 -2.86 6.00 30.67 0.18 -2.67 16 10 C -0.11 -2.40 6.09 30.65 0.19 -2.21 16 11 C 0.04 1.04 5.09 86.33 0.44 1.47 16 12 N -0.50 -12.07 4.69 -875.66 -4.11 -16.18 16 13 C 0.03 0.71 3.88 85.56 0.33 1.04 16 14 C 0.47 15.75 6.96 87.66 0.61 16.36 16 15 O -0.57 -25.17 11.27 -3.04 -0.03 -25.20 16 16 N -0.60 -19.97 2.46 -826.15 -2.03 -22.00 16 17 C 0.26 12.26 5.12 85.63 0.44 12.70 16 18 C -0.53 -28.50 9.39 25.60 0.24 -28.25 16 19 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 20 C 0.01 0.68 5.46 84.65 0.46 1.14 16 21 N -0.92 -53.41 13.29 21.45 0.28 -53.13 16 22 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C 0.11 2.56 5.09 86.38 0.44 3.00 16 27 C -0.04 -0.59 5.93 28.79 0.17 -0.42 16 28 C 0.25 4.82 15.43 89.44 1.38 6.20 16 29 N -0.49 -12.62 18.54 20.00 0.37 -12.25 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.38 9.17 9.03 -74.06 -0.67 8.50 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.18 5.85 -2.38 -0.01 1.16 16 36 H 0.06 1.40 6.49 -2.39 -0.02 1.38 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 1.07 5.77 -2.39 -0.01 1.06 16 43 H 0.07 1.84 8.07 -2.39 -0.02 1.82 16 44 H 0.12 2.26 7.48 -2.38 -0.02 2.24 16 45 H 0.13 2.08 4.59 -2.39 -0.01 2.07 16 46 H 0.00 0.14 7.49 -2.39 -0.02 0.12 16 47 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 48 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 49 H 0.08 2.14 8.06 -2.39 -0.02 2.12 16 50 H 0.10 1.79 6.70 -2.38 -0.02 1.77 16 51 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 52 H 0.13 1.40 6.53 -2.39 -0.02 1.39 16 Total: -1.00 -73.70 405.03 0.88 -72.82 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.26 Total: 22.30 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.02 Total: 5.65 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -5.48 Total: -103.56 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.94 Total: -43.05 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.70 0.88 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318879753.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.326 kcal (2) G-P(sol) polarization free energy of solvation -73.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds