Wall clock time and date at job start Tue Mar 31 2020 19:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47285 * 2 1 4 4 O 1.42905 * 109.47036 * 239.99715 * 2 1 3 5 5 C 1.52998 * 109.46886 * 119.99936 * 2 1 3 6 6 C 1.53003 * 109.46995 * 184.73753 * 5 2 1 7 7 H 1.08999 * 109.45476 * 174.89069 * 6 5 2 8 8 C 1.53042 * 109.46348 * 54.91443 * 6 5 2 9 9 C 1.53113 * 109.27740 * 180.80497 * 8 6 5 10 10 C 1.53119 * 109.16394 * 57.65749 * 9 8 6 11 11 C 1.53046 * 109.27407 * 302.34247 * 10 9 8 12 12 N 1.46846 * 109.52111 * 59.18101 * 11 10 9 13 13 C 1.46903 * 110.99888 * 174.15700 * 12 11 10 14 14 C 1.50706 * 109.46825 * 64.12153 * 13 12 11 15 15 O 1.21283 * 120.00278 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99668 * 179.97438 * 14 13 12 17 17 C 1.46505 * 119.99618 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47427 * 270.00003 * 17 16 14 19 19 H 1.07999 * 120.00005 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00151 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00008 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47449 * 89.99561 * 22 20 18 24 24 H 1.48501 * 109.47326 * 209.99886 * 22 20 18 25 25 H 1.48506 * 109.47216 * 329.99630 * 22 20 18 26 26 C 1.46492 * 120.00445 * 359.97438 * 16 14 13 27 27 C 1.53002 * 109.47253 * 270.00020 * 26 16 14 28 28 C 1.47195 * 109.47260 * 179.97438 * 27 26 16 29 29 N 6.77630 * 77.99614 * 189.17129 * 2 1 3 30 30 H 1.08998 * 109.46931 * 300.00149 * 1 2 3 31 31 H 1.08999 * 109.46573 * 60.00645 * 1 2 3 32 32 H 1.09007 * 109.46963 * 179.97438 * 1 2 3 33 33 H 0.96694 * 113.99930 * 299.99875 * 4 2 1 34 34 H 1.08995 * 109.47593 * 64.73959 * 5 2 1 35 35 H 1.09001 * 109.47182 * 304.73684 * 5 2 1 36 36 H 1.08995 * 109.50159 * 60.86318 * 8 6 5 37 37 H 1.09003 * 109.53329 * 300.76701 * 8 6 5 38 38 H 1.09000 * 109.52678 * 297.74978 * 9 8 6 39 39 H 1.08998 * 109.57447 * 177.58932 * 9 8 6 40 40 H 1.08996 * 109.50650 * 182.40440 * 10 9 8 41 41 H 1.09000 * 109.53654 * 62.29837 * 10 9 8 42 42 H 1.08999 * 109.46432 * 299.16025 * 11 10 9 43 43 H 1.09005 * 109.45940 * 179.19253 * 11 10 9 44 44 H 1.08997 * 109.47099 * 304.12609 * 13 12 11 45 45 H 1.08997 * 109.47385 * 184.11609 * 13 12 11 46 46 H 1.08997 * 109.47515 * 30.00453 * 17 16 14 47 47 H 1.09004 * 109.46815 * 150.00366 * 17 16 14 48 48 H 0.96997 * 120.00129 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.47727 * 149.99751 * 26 16 14 50 50 H 1.09002 * 109.47327 * 29.99685 * 26 16 14 51 51 H 1.09002 * 109.47128 * 299.99770 * 27 26 16 52 52 H 1.08994 * 109.46633 * 59.99831 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2493 6 6 3.5653 -0.6189 1.3103 7 1 3.9212 -1.0529 2.2446 8 6 3.9809 0.8524 1.2405 9 6 5.5085 0.9487 1.2816 10 6 6.0945 0.1409 0.1203 11 6 5.6176 -1.3097 0.2225 12 7 4.1504 -1.3483 0.1779 13 6 3.6612 -2.7328 0.1343 14 6 4.0403 -3.4399 1.4100 15 8 4.6576 -2.8489 2.2706 16 7 3.6933 -4.7290 1.5946 17 6 4.0623 -5.4166 2.8345 18 6 5.4115 -6.0664 2.6663 19 1 5.9414 -5.9759 1.7296 20 6 5.9695 -6.7764 3.7082 21 7 5.3245 -6.8861 4.8490 22 14 7.6422 -7.5812 3.4999 23 1 8.7048 -6.6276 3.9081 24 1 7.7157 -8.7974 4.3489 25 1 7.8362 -7.9588 2.0767 26 6 2.9472 -5.4428 0.5554 27 6 1.4461 -5.2709 0.7961 28 6 0.6964 -5.9876 -0.2484 29 7 0.1207 -6.5434 -1.0564 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7210 -1.5952 -1.2328 34 1 1.7476 -1.7704 1.2079 35 1 1.6090 -0.2587 2.1372 36 1 3.5594 1.3902 2.0896 37 1 3.6134 1.2913 0.3129 38 1 5.8736 0.5458 2.2263 39 1 5.8112 1.9916 1.1891 40 1 7.1829 0.1705 0.1691 41 1 5.7608 0.5678 -0.8256 42 1 5.9639 -1.7405 1.1620 43 1 6.0215 -1.8844 -0.6110 44 1 4.1089 -3.2497 -0.7144 45 1 2.5764 -2.7317 0.0281 46 1 4.1056 -4.6956 3.6508 47 1 3.3176 -6.1793 3.0625 48 1 5.7172 -7.3853 5.5821 49 1 3.2015 -6.5022 0.5882 50 1 3.2071 -5.0369 -0.4223 51 1 1.1860 -5.6768 1.7738 52 1 1.1919 -4.2116 0.7632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000318879756.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:23 Heat of formation + Delta-G solvation = -55.338437 kcal Electronic energy + Delta-G solvation = -31901.329761 eV Core-core repulsion = 27900.997988 eV Total energy + Delta-G solvation = -4000.331773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.45584 -38.49058 -37.10241 -36.68794 -35.25628 -33.41379 -32.80396 -32.64595 -30.89655 -30.28372 -28.40989 -26.81762 -26.10936 -24.05915 -23.37739 -22.73863 -22.05185 -20.93808 -19.44515 -18.40679 -17.64414 -16.70834 -16.48945 -16.31355 -15.96445 -15.66589 -15.17808 -15.03245 -14.78119 -14.70510 -14.17770 -14.12441 -13.98255 -13.84205 -13.37342 -13.02570 -12.86899 -12.67878 -12.54232 -12.47402 -12.37283 -12.12778 -11.87788 -11.80929 -11.69111 -11.61583 -11.52464 -11.31938 -11.10190 -11.03153 -10.88296 -10.67697 -10.58825 -10.36779 -10.22798 -10.16941 -9.92565 -9.79186 -9.72142 -9.51538 -8.51438 -7.88505 -7.58698 -6.13132 -4.17800 2.67647 2.76032 3.20186 3.26145 3.32890 3.35242 3.62246 4.07545 4.17327 4.38232 4.45628 4.70049 4.87175 4.89884 5.00891 5.04423 5.06697 5.12101 5.17589 5.21058 5.21643 5.26299 5.40747 5.44664 5.54508 5.57885 5.63877 5.70872 5.76733 5.77253 5.82182 5.90512 5.97371 6.00632 6.05729 6.08474 6.17931 6.23829 6.26902 6.34804 6.47437 6.66226 6.86247 7.26389 7.32658 7.38494 7.39123 7.53144 7.79099 7.82740 8.13103 8.21941 8.78915 8.93558 9.48058 10.94946 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.004459 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.089333 B = 6277.469061 C = 8338.906460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.107 3.893 3 H 0.098 0.902 4 O -0.537 6.537 5 C -0.150 4.150 6 C 0.070 3.930 7 H 0.082 0.918 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.110 4.110 11 C 0.039 3.961 12 N -0.487 5.487 13 C 0.030 3.970 14 C 0.474 3.526 15 O -0.530 6.530 16 N -0.596 5.596 17 C 0.244 3.756 18 C -0.528 4.528 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.116 3.884 27 C -0.049 4.049 28 C 0.215 3.785 29 N -0.442 5.442 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.361 0.639 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.032 0.968 48 H 0.264 0.736 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.116 0.884 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.508 13.315 -8.626 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.048 3.952 3 H 0.115 0.885 4 O -0.341 6.341 5 C -0.188 4.188 6 C -0.038 4.038 7 H 0.100 0.900 8 C -0.147 4.147 9 C -0.157 4.157 10 C -0.148 4.148 11 C -0.089 4.089 12 N -0.210 5.210 13 C -0.102 4.102 14 C 0.260 3.740 15 O -0.407 6.407 16 N -0.328 5.328 17 C 0.125 3.875 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.010 4.010 27 C -0.090 4.090 28 C -0.103 4.103 29 N -0.120 5.120 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.207 0.793 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.115 0.885 45 H 0.111 0.889 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.073 0.927 49 H 0.112 0.888 50 H 0.095 0.905 51 H 0.134 0.866 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.888 13.548 -9.715 18.444 hybrid contribution 1.033 -1.429 1.285 2.182 sum -6.855 12.119 -8.430 16.277 Atomic orbital electron populations 1.22589 0.97626 1.02185 1.02253 1.21855 0.91191 0.97104 0.85058 0.88474 1.86711 1.76894 1.27788 1.42703 1.22462 0.96305 1.01100 0.98903 1.21852 0.92773 0.94226 0.94975 0.90020 1.21649 0.95792 0.95780 1.01516 1.21536 0.95770 0.99343 0.99058 1.21498 0.99208 0.95360 0.98706 1.22273 0.87684 0.96682 1.02213 1.62423 1.07056 1.09484 1.42029 1.22442 1.01676 0.90037 0.95999 1.21878 0.80152 0.82330 0.89631 1.90588 1.39986 1.64841 1.45308 1.48398 1.53416 1.11008 1.19934 1.19316 0.95484 0.92175 0.80516 1.21390 1.03448 1.32408 0.99385 0.92479 1.24906 0.97705 0.96295 0.94999 1.69913 1.38357 1.41616 1.03354 0.86535 0.84245 0.78808 0.78067 1.20582 1.21156 1.19902 1.21308 0.87422 1.00270 0.92011 1.19880 0.94890 0.99711 0.94566 1.29122 0.93583 0.93561 0.94024 1.81272 1.09935 1.09697 1.11055 0.92001 0.92190 0.92656 0.79250 0.91788 0.91024 0.92346 0.91176 0.92080 0.92587 0.92231 0.91706 0.91564 0.91763 0.88485 0.88900 0.93760 0.94967 0.92679 0.88795 0.90498 0.86560 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.47 9.53 37.16 0.35 -1.11 16 2 C 0.11 0.99 3.25 -26.73 -0.09 0.90 16 3 H 0.10 0.95 6.05 -51.93 -0.31 0.63 16 4 O -0.54 -5.57 11.27 -35.23 -0.40 -5.97 16 5 C -0.15 -1.54 4.49 -26.73 -0.12 -1.66 16 6 C 0.07 0.89 1.68 -67.72 -0.11 0.78 16 7 H 0.08 1.36 5.51 -51.93 -0.29 1.07 16 8 C -0.11 -1.26 4.91 -26.65 -0.13 -1.39 16 9 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 10 C -0.11 -1.35 6.09 -26.65 -0.16 -1.52 16 11 C 0.04 0.56 5.07 -3.83 -0.02 0.54 16 12 N -0.49 -6.27 3.28 -228.11 -0.75 -7.02 16 13 C 0.03 0.37 3.26 -4.97 -0.02 0.36 16 14 C 0.47 8.00 7.06 -10.98 -0.08 7.92 16 15 O -0.53 -11.15 11.19 5.55 0.06 -11.09 16 16 N -0.60 -10.21 2.46 -175.06 -0.43 -10.64 16 17 C 0.24 5.60 5.16 -5.19 -0.03 5.57 16 18 C -0.53 -13.79 9.39 -34.44 -0.32 -14.11 16 19 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 22 Si 0.90 21.04 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 27 C -0.05 -0.47 6.03 -29.52 -0.18 -0.64 16 28 C 0.22 2.42 15.44 -20.72 -0.32 2.10 16 29 N -0.44 -6.19 18.55 42.20 0.78 -5.41 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.36 2.92 7.30 45.56 0.33 3.26 16 34 H 0.06 0.65 6.00 -51.93 -0.31 0.34 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.79 6.20 -51.93 -0.32 0.47 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.18 5.84 -51.93 -0.30 0.88 16 43 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 44 H 0.10 1.12 7.36 -51.93 -0.38 0.73 16 45 H 0.09 0.88 3.50 -51.93 -0.18 0.70 16 46 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 47 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 48 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 50 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 51 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.10 0.75 7.22 -51.93 -0.37 0.37 16 LS Contribution 399.50 15.07 6.02 6.02 Total: -1.00 -31.75 399.50 -8.39 -40.14 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.89 Total: 3.23 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.50 Total: -0.81 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.34 Total: -47.54 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.33 Total: -17.06 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.75 -8.39 -40.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318879756.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.202 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds