Wall clock time and date at job start Tue Mar 31 2020 19:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47444 * 2 1 4 4 O 1.42901 * 109.47249 * 119.99796 * 2 1 3 5 5 C 1.52997 * 109.47447 * 239.99435 * 2 1 3 6 6 C 1.53003 * 109.47384 * 174.56432 * 5 2 1 7 7 H 1.08999 * 109.45400 * 183.31002 * 6 5 2 8 8 C 1.53035 * 109.46411 * 303.28978 * 6 5 2 9 9 C 1.53117 * 109.28018 * 179.19136 * 8 6 5 10 10 C 1.53120 * 109.16086 * 302.34698 * 9 8 6 11 11 C 1.53040 * 109.28132 * 57.65231 * 10 9 8 12 12 N 1.46845 * 109.52067 * 300.82246 * 11 10 9 13 13 C 1.46901 * 110.99904 * 185.83879 * 12 11 10 14 14 C 1.50696 * 109.47336 * 70.45418 * 13 12 11 15 15 O 1.21280 * 119.99575 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.46488 * 120.00411 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47456 * 89.99357 * 17 16 14 19 19 H 1.07995 * 119.99678 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00037 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47347 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47425 * 120.00079 * 22 20 18 25 25 H 1.48504 * 109.47516 * 240.00454 * 22 20 18 26 26 C 1.46503 * 119.99653 * 359.97438 * 16 14 13 27 27 C 1.52993 * 109.47275 * 90.00396 * 26 16 14 28 28 C 1.47206 * 109.47542 * 180.02562 * 27 26 16 29 29 N 7.92849 * 99.06127 * 194.49783 * 2 1 3 30 30 H 1.09004 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47527 * 299.99996 * 1 2 3 32 32 H 1.09001 * 109.47119 * 60.00578 * 1 2 3 33 33 H 0.96699 * 114.00373 * 59.99526 * 4 2 1 34 34 H 1.08997 * 109.46985 * 54.57133 * 5 2 1 35 35 H 1.08997 * 109.47536 * 294.57209 * 5 2 1 36 36 H 1.09008 * 109.50307 * 59.24926 * 8 6 5 37 37 H 1.09003 * 109.49987 * 299.13481 * 8 6 5 38 38 H 1.08992 * 109.52333 * 182.44057 * 9 8 6 39 39 H 1.09006 * 109.57518 * 62.28051 * 9 8 6 40 40 H 1.08997 * 109.50129 * 297.71287 * 10 9 8 41 41 H 1.09003 * 109.53382 * 177.61197 * 10 9 8 42 42 H 1.08997 * 109.46540 * 180.80315 * 11 10 9 43 43 H 1.09004 * 109.45444 * 60.82956 * 11 10 9 44 44 H 1.09001 * 109.47241 * 190.45672 * 13 12 11 45 45 H 1.09003 * 109.47058 * 310.44707 * 13 12 11 46 46 H 1.09003 * 109.47710 * 209.99527 * 17 16 14 47 47 H 1.09004 * 109.47329 * 329.99376 * 17 16 14 48 48 H 0.96999 * 119.99909 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.47187 * 210.00650 * 26 16 14 50 50 H 1.09006 * 109.47140 * 330.00535 * 26 16 14 51 51 H 1.09004 * 109.47220 * 300.00233 * 27 26 16 52 52 H 1.08996 * 109.47410 * 59.99884 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2491 6 6 3.5639 -0.6041 -1.3193 7 1 3.9216 -1.0670 -2.2390 8 6 3.9630 0.8732 -1.3032 9 6 5.4892 0.9852 -1.3532 10 6 6.0880 0.2257 -0.1661 11 6 5.6274 -1.2329 -0.2152 12 7 4.1608 -1.2863 -0.1639 13 6 3.6876 -2.6738 -0.0696 14 6 4.0193 -3.2262 1.2927 15 8 4.5939 -2.5325 2.1048 16 7 3.6785 -4.4914 1.6082 17 6 4.0014 -5.0285 2.9323 18 6 2.8611 -4.7529 3.8782 19 1 1.9833 -4.2302 3.5279 20 6 2.9379 -5.1689 5.1904 21 7 4.0066 -5.8058 5.6168 22 14 1.5242 -4.8278 6.3627 23 1 0.4473 -4.1026 5.6417 24 1 0.9921 -6.1126 6.8836 25 1 2.0087 -3.9975 7.4945 26 6 2.9849 -5.3295 0.6270 27 6 4.0137 -6.0880 -0.2138 28 6 3.3168 -6.9297 -1.2001 29 7 2.7786 -7.5802 -1.9601 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.7209 -1.5951 1.2331 34 1 1.5995 -0.2668 -2.1365 35 1 1.7583 -1.7732 -1.2018 36 1 3.5935 1.3401 -0.3900 37 1 3.5326 1.3759 -2.1693 38 1 5.7794 2.0344 -1.2982 39 1 5.8567 0.5539 -2.2844 40 1 5.7520 0.6823 0.7649 41 1 7.1760 0.2657 -0.2192 42 1 6.0405 -1.7731 0.6367 43 1 5.9755 -1.6926 -1.1402 44 1 2.6082 -2.7005 -0.2195 45 1 4.1756 -3.2770 -0.8351 46 1 4.1608 -6.1043 2.8591 47 1 4.9074 -4.5518 3.3067 48 1 4.0609 -6.0981 6.5401 49 1 2.3436 -6.0418 1.1462 50 1 2.3771 -4.7003 -0.0233 51 1 4.6549 -5.3757 -0.7329 52 1 4.6215 -6.7172 0.4364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000318879758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:26 Heat of formation + Delta-G solvation = -52.193068 kcal Electronic energy + Delta-G solvation = -31715.019809 eV Core-core repulsion = 27714.824430 eV Total energy + Delta-G solvation = -4000.195379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.15546 -38.63092 -36.93492 -36.75718 -35.14844 -33.51918 -32.79750 -32.58411 -30.80430 -30.25781 -28.42702 -26.84549 -26.15808 -24.00187 -23.49652 -22.68775 -22.03351 -20.97831 -19.28832 -18.44230 -17.60662 -16.78218 -16.40704 -16.12340 -15.82720 -15.67549 -15.28708 -14.96684 -14.68464 -14.52836 -14.23401 -14.19215 -13.82835 -13.75206 -13.36470 -13.23332 -12.88039 -12.80385 -12.47956 -12.45517 -12.41058 -12.09591 -11.94244 -11.86406 -11.75567 -11.69300 -11.42535 -11.24078 -11.21067 -10.97069 -10.81379 -10.74731 -10.60541 -10.44774 -10.27240 -10.13897 -10.02816 -9.62291 -9.60698 -8.83951 -8.43209 -7.93437 -7.73542 -6.04582 -4.08365 2.71329 2.78819 3.31433 3.38340 3.40642 3.45790 3.55674 3.95818 4.29701 4.46745 4.49910 4.62738 4.75508 4.90796 4.96247 4.99800 5.06348 5.13839 5.15539 5.21558 5.28588 5.31737 5.33565 5.37262 5.41535 5.49381 5.51579 5.56857 5.63136 5.71782 5.75592 5.78642 5.83049 5.89983 5.95724 6.00384 6.06493 6.08620 6.15836 6.31797 6.33533 6.49311 6.94367 7.23998 7.33540 7.42708 7.50879 7.55407 7.92287 8.05012 8.22474 8.35564 8.92042 9.12873 9.57349 11.03598 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.004280 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.895057 B = 6540.950919 C = 7616.378186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.096 0.904 4 O -0.525 6.525 5 C -0.155 4.155 6 C 0.092 3.908 7 H 0.033 0.967 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.113 4.113 11 C 0.057 3.943 12 N -0.490 5.490 13 C 0.031 3.969 14 C 0.508 3.492 15 O -0.501 6.501 16 N -0.603 5.603 17 C 0.247 3.753 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.283 1.283 26 C 0.120 3.880 27 C -0.051 4.051 28 C 0.217 3.783 29 N -0.447 5.447 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.364 0.636 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.032 0.968 47 H 0.045 0.955 48 H 0.262 0.738 49 H 0.093 0.907 50 H 0.070 0.930 51 H 0.104 0.896 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 9.785 -16.794 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.046 3.954 3 H 0.114 0.886 4 O -0.328 6.328 5 C -0.193 4.193 6 C -0.017 4.017 7 H 0.051 0.949 8 C -0.151 4.151 9 C -0.157 4.157 10 C -0.151 4.151 11 C -0.071 4.071 12 N -0.214 5.214 13 C -0.100 4.100 14 C 0.293 3.707 15 O -0.374 6.374 16 N -0.337 5.337 17 C 0.128 3.872 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.209 1.209 26 C -0.007 4.007 27 C -0.093 4.093 28 C -0.101 4.101 29 N -0.124 5.124 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.210 0.790 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.037 0.963 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.112 0.888 50 H 0.089 0.911 51 H 0.122 0.878 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.914 9.957 -16.757 19.513 hybrid contribution -0.690 -0.751 -0.008 1.020 sum -1.604 9.206 -16.765 19.194 Atomic orbital electron populations 1.22596 0.97655 1.02246 1.02194 1.21792 0.91284 0.97116 0.85180 0.88597 1.86849 1.76330 1.27987 1.41644 1.22552 0.95480 1.01525 0.99698 1.21532 0.93668 0.95216 0.91244 0.94875 1.21685 0.95915 0.95226 1.02235 1.21574 0.95627 1.00120 0.98397 1.21525 0.99167 0.95302 0.99104 1.22170 0.87282 0.97262 1.00361 1.61480 1.06845 1.12927 1.40194 1.22194 1.01680 0.90123 0.96030 1.20152 0.80290 0.81659 0.88594 1.90694 1.39839 1.56686 1.50214 1.48245 1.57965 1.11659 1.15813 1.19294 0.97479 0.93936 0.76457 1.21444 1.03028 1.36868 0.94825 0.92314 1.24900 0.95988 0.95058 0.98029 1.69928 1.27708 1.39066 1.16714 0.86487 0.82337 0.77776 0.81068 1.19785 1.21176 1.20946 1.21248 0.93194 0.95076 0.91198 1.19931 0.98613 0.97147 0.93587 1.29146 0.93612 0.93607 0.93739 1.81205 1.09532 1.10350 1.11305 0.92631 0.91902 0.92309 0.78992 0.90960 0.91401 0.90251 0.92135 0.92171 0.92804 0.90605 0.92088 0.89036 0.96314 0.88640 0.93373 0.95030 0.93674 0.92830 0.88838 0.91134 0.87824 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.53 37.15 0.35 -1.45 16 2 C 0.11 1.16 3.31 -26.74 -0.09 1.07 16 3 H 0.10 1.06 6.05 -51.93 -0.31 0.75 16 4 O -0.52 -7.90 11.16 -35.23 -0.39 -8.29 16 5 C -0.15 -1.44 4.47 -26.73 -0.12 -1.56 16 6 C 0.09 0.96 2.14 -67.72 -0.14 0.82 16 7 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 8 C -0.11 -1.11 4.97 -26.65 -0.13 -1.24 16 9 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 10 C -0.11 -1.34 6.09 -26.65 -0.16 -1.50 16 11 C 0.06 0.75 5.11 -3.83 -0.02 0.73 16 12 N -0.49 -6.41 2.74 -228.12 -0.63 -7.03 16 13 C 0.03 0.39 2.73 -4.98 -0.01 0.38 16 14 C 0.51 8.90 7.13 -10.99 -0.08 8.82 16 15 O -0.50 -11.27 14.30 5.56 0.08 -11.19 16 16 N -0.60 -10.51 2.46 -175.06 -0.43 -10.94 16 17 C 0.25 5.72 5.16 -5.20 -0.03 5.69 16 18 C -0.52 -13.71 9.39 -34.44 -0.32 -14.03 16 19 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 22 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.12 1.52 5.17 -4.04 -0.02 1.49 16 27 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 28 C 0.22 2.56 15.43 -20.76 -0.32 2.24 16 29 N -0.45 -6.44 18.54 42.15 0.78 -5.66 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.36 5.28 7.33 45.56 0.33 5.62 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.62 5.84 -51.93 -0.30 0.31 16 36 H 0.08 0.90 6.21 -51.92 -0.32 0.57 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.48 6.21 -51.93 -0.32 1.15 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 1.07 3.62 -51.93 -0.19 0.88 16 45 H 0.05 0.52 7.11 -51.93 -0.37 0.15 16 46 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 47 H 0.05 1.21 7.42 -51.93 -0.39 0.82 16 48 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 50 H 0.07 0.73 6.44 -51.93 -0.33 0.39 16 51 H 0.10 0.88 7.22 -51.93 -0.37 0.50 16 52 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -32.52 404.89 -8.34 -40.86 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.04 Total: 3.61 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.53 Total: 1.04 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.46 Total: -48.41 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.31 Total: -19.48 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.52 -8.34 -40.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318879758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.335 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds