Wall clock time and date at job start Tue Mar 31 2020 19:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.47444 * 2 1 4 4 O 1.42901 * 109.47249 * 119.99796 * 2 1 3 5 5 C 1.52997 * 109.47447 * 239.99435 * 2 1 3 6 6 C 1.53003 * 109.47384 * 174.56432 * 5 2 1 7 7 H 1.08999 * 109.45400 * 183.31002 * 6 5 2 8 8 C 1.53035 * 109.46411 * 303.28978 * 6 5 2 9 9 C 1.53117 * 109.28018 * 179.19136 * 8 6 5 10 10 C 1.53120 * 109.16086 * 302.34698 * 9 8 6 11 11 C 1.53040 * 109.28132 * 57.65231 * 10 9 8 12 12 N 1.46845 * 109.52067 * 300.82246 * 11 10 9 13 13 C 1.46901 * 110.99904 * 185.83879 * 12 11 10 14 14 C 1.50696 * 109.47336 * 70.45418 * 13 12 11 15 15 O 1.21280 * 119.99575 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00436 * 180.02562 * 14 13 12 17 17 C 1.46488 * 120.00411 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47456 * 89.99357 * 17 16 14 19 19 H 1.07995 * 119.99678 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00037 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47347 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47425 * 120.00079 * 22 20 18 25 25 H 1.48504 * 109.47516 * 240.00454 * 22 20 18 26 26 C 1.46503 * 119.99653 * 359.97438 * 16 14 13 27 27 C 1.52993 * 109.47275 * 90.00396 * 26 16 14 28 28 C 1.47206 * 109.47542 * 180.02562 * 27 26 16 29 29 N 7.92849 * 99.06127 * 194.49783 * 2 1 3 30 30 H 1.09004 * 109.47319 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47527 * 299.99996 * 1 2 3 32 32 H 1.09001 * 109.47119 * 60.00578 * 1 2 3 33 33 H 0.96699 * 114.00373 * 59.99526 * 4 2 1 34 34 H 1.08997 * 109.46985 * 54.57133 * 5 2 1 35 35 H 1.08997 * 109.47536 * 294.57209 * 5 2 1 36 36 H 1.09008 * 109.50307 * 59.24926 * 8 6 5 37 37 H 1.09003 * 109.49987 * 299.13481 * 8 6 5 38 38 H 1.08992 * 109.52333 * 182.44057 * 9 8 6 39 39 H 1.09006 * 109.57518 * 62.28051 * 9 8 6 40 40 H 1.08997 * 109.50129 * 297.71287 * 10 9 8 41 41 H 1.09003 * 109.53382 * 177.61197 * 10 9 8 42 42 H 1.08997 * 109.46540 * 180.80315 * 11 10 9 43 43 H 1.09004 * 109.45444 * 60.82956 * 11 10 9 44 44 H 1.09001 * 109.47241 * 190.45672 * 13 12 11 45 45 H 1.09003 * 109.47058 * 310.44707 * 13 12 11 46 46 H 1.09003 * 109.47710 * 209.99527 * 17 16 14 47 47 H 1.09004 * 109.47329 * 329.99376 * 17 16 14 48 48 H 0.96999 * 119.99909 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.47187 * 210.00650 * 26 16 14 50 50 H 1.09006 * 109.47140 * 330.00535 * 26 16 14 51 51 H 1.09004 * 109.47220 * 300.00233 * 27 26 16 52 52 H 1.08996 * 109.47410 * 59.99884 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2491 6 6 3.5639 -0.6041 -1.3193 7 1 3.9216 -1.0670 -2.2390 8 6 3.9630 0.8732 -1.3032 9 6 5.4892 0.9852 -1.3532 10 6 6.0880 0.2257 -0.1661 11 6 5.6274 -1.2329 -0.2152 12 7 4.1608 -1.2863 -0.1639 13 6 3.6876 -2.6738 -0.0696 14 6 4.0193 -3.2262 1.2927 15 8 4.5939 -2.5325 2.1048 16 7 3.6785 -4.4914 1.6082 17 6 4.0014 -5.0285 2.9323 18 6 2.8611 -4.7529 3.8782 19 1 1.9833 -4.2302 3.5279 20 6 2.9379 -5.1689 5.1904 21 7 4.0066 -5.8058 5.6168 22 14 1.5242 -4.8278 6.3627 23 1 0.4473 -4.1026 5.6417 24 1 0.9921 -6.1126 6.8836 25 1 2.0087 -3.9975 7.4945 26 6 2.9849 -5.3295 0.6270 27 6 4.0137 -6.0880 -0.2138 28 6 3.3168 -6.9297 -1.2001 29 7 2.7786 -7.5802 -1.9601 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.7209 -1.5951 1.2331 34 1 1.5995 -0.2668 -2.1365 35 1 1.7583 -1.7732 -1.2018 36 1 3.5935 1.3401 -0.3900 37 1 3.5326 1.3759 -2.1693 38 1 5.7794 2.0344 -1.2982 39 1 5.8567 0.5539 -2.2844 40 1 5.7520 0.6823 0.7649 41 1 7.1760 0.2657 -0.2192 42 1 6.0405 -1.7731 0.6367 43 1 5.9755 -1.6926 -1.1402 44 1 2.6082 -2.7005 -0.2195 45 1 4.1756 -3.2770 -0.8351 46 1 4.1608 -6.1043 2.8591 47 1 4.9074 -4.5518 3.3067 48 1 4.0609 -6.0981 6.5401 49 1 2.3436 -6.0418 1.1462 50 1 2.3771 -4.7003 -0.0233 51 1 4.6549 -5.3757 -0.7329 52 1 4.6215 -6.7172 0.4364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000318879758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:25 Heat of formation + Delta-G solvation = -73.516391 kcal Electronic energy + Delta-G solvation = -31715.944457 eV Core-core repulsion = 27714.824430 eV Total energy + Delta-G solvation = -4001.120028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22790 -39.83052 -37.97316 -37.76701 -36.53604 -34.88974 -34.29704 -33.54683 -32.08789 -31.10885 -29.87139 -28.04659 -27.23748 -25.24959 -24.80881 -23.77380 -23.14466 -21.86134 -20.17319 -19.77291 -18.75392 -18.28673 -17.90284 -17.21352 -17.00618 -16.70376 -16.43370 -16.12051 -15.85547 -15.69258 -15.51509 -15.09658 -15.01419 -14.76069 -14.47111 -14.21225 -14.08272 -13.89293 -13.79233 -13.53530 -13.48895 -13.26295 -13.12511 -12.99852 -12.80325 -12.71401 -12.64242 -12.52059 -12.49155 -12.37867 -12.12042 -12.06340 -11.82211 -11.64558 -11.57719 -11.28997 -11.17593 -10.84533 -10.55066 -10.54083 -10.25980 -9.34051 -8.83967 -8.12589 -6.23416 1.40499 1.44250 1.53832 1.72242 1.84588 2.08126 2.32155 2.48258 3.01335 3.19054 3.24622 3.65824 3.82766 3.89790 3.96225 4.05143 4.10996 4.15454 4.18103 4.33039 4.35636 4.37774 4.46958 4.49998 4.58821 4.64108 4.65854 4.73597 4.81374 4.87346 4.95760 5.00351 5.00929 5.07779 5.09514 5.13491 5.16011 5.20754 5.29862 5.34185 5.42350 5.43201 5.47912 5.62007 5.70144 5.97320 6.20764 6.26501 6.45514 6.61297 6.86302 6.96415 7.05258 7.43110 7.75503 8.94077 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.004280 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.895057 B = 6540.950919 C = 7616.378186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 H 0.091 0.909 4 O -0.555 6.555 5 C -0.148 4.148 6 C 0.091 3.909 7 H 0.050 0.950 8 C -0.112 4.112 9 C -0.114 4.114 10 C -0.112 4.112 11 C 0.059 3.941 12 N -0.512 5.512 13 C 0.044 3.956 14 C 0.505 3.495 15 O -0.560 6.560 16 N -0.603 5.603 17 C 0.264 3.736 18 C -0.529 4.529 19 H 0.055 0.945 20 C 0.010 3.990 21 N -0.929 5.929 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.289 1.289 26 C 0.115 3.885 27 C -0.039 4.039 28 C 0.246 3.754 29 N -0.488 5.488 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.361 0.639 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.118 0.882 45 H 0.079 0.921 46 H 0.030 0.970 47 H 0.000 1.000 48 H 0.263 0.737 49 H 0.083 0.917 50 H 0.104 0.896 51 H 0.132 0.868 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 10.369 -19.988 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.042 3.958 3 H 0.109 0.891 4 O -0.359 6.359 5 C -0.185 4.185 6 C -0.017 4.017 7 H 0.068 0.932 8 C -0.150 4.150 9 C -0.151 4.151 10 C -0.150 4.150 11 C -0.068 4.068 12 N -0.237 5.237 13 C -0.087 4.087 14 C 0.294 3.706 15 O -0.437 6.437 16 N -0.336 5.336 17 C 0.142 3.858 18 C -0.567 4.567 19 H 0.074 0.926 20 C -0.188 4.188 21 N -0.569 5.569 22 Si 0.780 3.220 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.215 1.215 26 C -0.009 4.009 27 C -0.080 4.080 28 C -0.071 4.071 29 N -0.166 5.166 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.207 0.793 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.135 0.865 45 H 0.097 0.903 46 H 0.048 0.952 47 H 0.018 0.982 48 H 0.072 0.928 49 H 0.101 0.899 50 H 0.122 0.878 51 H 0.149 0.851 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.390 10.530 -20.008 22.736 hybrid contribution -0.204 -0.873 1.002 1.344 sum -2.594 9.658 -19.006 21.476 Atomic orbital electron populations 1.22527 0.96525 1.02515 1.02548 1.21952 0.92168 0.96761 0.84900 0.89131 1.86843 1.77061 1.28004 1.43985 1.22513 0.94588 1.01900 0.99544 1.21648 0.94272 0.95170 0.90571 0.93194 1.21694 0.95892 0.95059 1.02310 1.21541 0.95595 1.00342 0.97645 1.21491 0.99810 0.94805 0.98874 1.22050 0.87737 0.97591 0.99471 1.61376 1.06707 1.13269 1.42350 1.22110 1.03158 0.90473 0.92950 1.21065 0.78688 0.80849 0.90040 1.90676 1.42399 1.58164 1.52505 1.48093 1.58284 1.12487 1.14699 1.18705 0.94691 0.93285 0.79089 1.21791 1.03506 1.35876 0.95575 0.92631 1.25682 0.98194 0.95172 0.99799 1.70034 1.29461 1.40377 1.17066 0.85566 0.79728 0.77856 0.78838 1.19099 1.20055 1.21544 1.21467 0.93661 0.95101 0.90720 1.19846 0.97860 0.97232 0.93067 1.29143 0.92482 0.92646 0.92869 1.81250 1.10779 1.11695 1.12911 0.92362 0.93426 0.90086 0.79261 0.88263 0.90683 0.92382 0.89555 0.91298 0.91245 0.93766 0.91304 0.92926 0.94391 0.86488 0.90289 0.95224 0.98236 0.92823 0.89876 0.87760 0.85058 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 9.53 71.98 0.69 -2.43 16 2 C 0.10 2.03 3.31 30.59 0.10 2.13 16 3 H 0.09 1.90 6.05 -2.39 -0.01 1.89 16 4 O -0.55 -16.62 11.16 -148.98 -1.66 -18.28 16 5 C -0.15 -2.18 4.47 30.59 0.14 -2.05 16 6 C 0.09 1.60 2.14 44.94 0.10 1.70 16 7 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 8 C -0.11 -1.90 4.97 30.65 0.15 -1.75 16 9 C -0.11 -1.96 6.00 30.67 0.18 -1.77 16 10 C -0.11 -2.62 6.09 30.65 0.19 -2.44 16 11 C 0.06 1.54 5.11 86.33 0.44 1.98 16 12 N -0.51 -12.64 2.74 -875.63 -2.40 -15.05 16 13 C 0.04 1.01 2.73 85.56 0.23 1.25 16 14 C 0.51 17.76 7.13 87.66 0.63 18.38 16 15 O -0.56 -26.49 14.30 -3.03 -0.04 -26.53 16 16 N -0.60 -20.94 2.46 -826.17 -2.03 -22.97 16 17 C 0.26 12.64 5.16 85.64 0.44 13.09 16 18 C -0.53 -28.37 9.39 25.60 0.24 -28.13 16 19 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 20 C 0.01 0.56 5.46 84.65 0.46 1.02 16 21 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 22 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 C 0.12 2.69 5.17 86.38 0.45 3.13 16 27 C -0.04 -0.69 6.03 28.79 0.17 -0.51 16 28 C 0.25 5.16 15.43 89.44 1.38 6.54 16 29 N -0.49 -13.10 18.54 20.01 0.37 -12.73 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.36 10.39 7.33 -74.06 -0.54 9.85 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.02 5.84 -2.39 -0.01 1.00 16 36 H 0.06 1.25 6.21 -2.38 -0.01 1.23 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.77 6.21 -2.39 -0.01 1.76 16 43 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.12 2.22 3.62 -2.39 -0.01 2.21 16 45 H 0.08 1.37 7.11 -2.39 -0.02 1.36 16 46 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 47 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 48 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 49 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 50 H 0.10 1.75 6.44 -2.38 -0.02 1.74 16 51 H 0.13 1.69 7.22 -2.39 -0.02 1.67 16 52 H 0.12 2.19 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -75.56 404.89 2.91 -72.65 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.38 Total: 20.61 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.99 Total: 10.14 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -3.77 Total: -104.91 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.71 Total: -44.81 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -75.56 2.91 -72.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000318879758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.867 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds