Wall clock time and date at job start Tue Mar 31 2020 20:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99849 * 2 1 4 4 C 1.53007 * 109.46615 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46617 * 180.02562 * 4 3 2 6 6 N 1.29950 * 126.28643 * 90.02783 * 5 4 3 7 7 O 1.21295 * 110.25295 * 179.97438 * 6 5 4 8 8 C 1.33648 * 109.81052 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.54977 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46795 * 269.96907 * 9 8 7 11 11 C 1.53122 * 109.52584 * 294.87466 * 10 9 8 12 12 C 1.53043 * 109.27607 * 182.50374 * 11 10 9 13 13 N 1.46852 * 109.57541 * 59.08660 * 12 11 10 14 14 C 1.46895 * 111.00290 * 174.19059 * 13 12 11 15 15 H 1.08998 * 109.47357 * 173.59776 * 14 13 12 16 16 C 1.52999 * 109.46769 * 53.59715 * 14 13 12 17 17 C 1.53004 * 109.47038 * 293.60237 * 14 13 12 18 18 C 1.50699 * 109.46550 * 295.99239 * 17 14 13 19 19 H 1.07996 * 120.00384 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99536 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00245 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47205 * 90.00523 * 22 20 18 24 24 H 1.48503 * 109.47017 * 210.00097 * 22 20 18 25 25 H 1.48494 * 109.47088 * 330.00120 * 22 20 18 26 26 C 1.46846 * 111.19705 * 298.28936 * 13 12 11 27 27 C 1.53043 * 109.52312 * 61.73998 * 26 13 12 28 28 N 1.31135 * 106.89526 * 359.76095 * 8 7 6 29 29 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46595 * 300.00025 * 1 2 3 31 31 H 1.09003 * 109.46899 * 59.99689 * 1 2 3 32 32 H 1.08998 * 109.46896 * 60.00562 * 3 2 1 33 33 H 1.09002 * 109.47411 * 300.00164 * 3 2 1 34 34 H 1.09002 * 109.47264 * 300.00130 * 4 3 2 35 35 H 1.08998 * 109.47130 * 60.00582 * 4 3 2 36 36 H 1.08998 * 109.47400 * 29.97064 * 9 8 7 37 37 H 1.08998 * 109.46740 * 149.97195 * 9 8 7 38 38 H 1.09000 * 109.52502 * 55.00344 * 10 9 8 39 39 H 1.09004 * 109.50275 * 302.38404 * 11 10 9 40 40 H 1.09000 * 109.50130 * 62.50059 * 11 10 9 41 41 H 1.08998 * 109.41011 * 299.06941 * 12 11 10 42 42 H 1.09002 * 109.45204 * 179.12582 * 12 11 10 43 43 H 1.09005 * 109.47237 * 60.00213 * 16 14 13 44 44 H 1.09004 * 109.47166 * 180.02562 * 16 14 13 45 45 H 1.09002 * 109.47465 * 299.99695 * 16 14 13 46 46 H 1.08994 * 109.46877 * 55.99327 * 17 14 13 47 47 H 1.08998 * 109.46603 * 175.99533 * 17 14 13 48 48 H 0.97001 * 120.00448 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.46193 * 301.72591 * 26 13 12 50 50 H 1.08996 * 109.46332 * 181.75838 * 26 13 12 51 51 H 1.09000 * 109.50243 * 180.88305 * 27 26 13 52 52 H 1.08999 * 109.53368 * 60.78277 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 7 4.4621 3.2630 1.0478 7 8 4.9364 4.3281 0.7133 8 6 4.9710 4.4097 -0.6203 9 6 5.4856 5.5680 -1.4355 10 6 4.3418 6.5463 -1.7102 11 6 3.2902 5.8691 -2.5935 12 6 2.1800 6.8717 -2.9162 13 7 2.7524 8.0342 -3.6073 14 6 1.6972 8.9532 -4.0543 15 1 2.1507 9.8572 -4.4607 16 6 0.8039 9.3198 -2.8676 17 6 0.8546 8.2746 -5.1363 18 6 1.7133 8.0021 -6.3443 19 1 2.7558 8.2843 -6.3406 20 6 1.1683 7.3917 -7.4540 21 7 -0.1010 7.0476 -7.4583 22 14 2.2328 7.0532 -8.9512 23 1 2.8528 5.7099 -8.8243 24 1 1.3935 7.0973 -10.1755 25 1 3.2982 8.0834 -9.0441 26 6 3.7298 8.7280 -2.7590 27 6 4.8871 7.7812 -2.4328 28 7 4.4758 3.2874 -1.0837 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8575 0.6434 0.8891 35 1 3.8568 0.6439 -0.8909 36 1 6.2754 6.0780 -0.8840 37 1 5.8829 5.1987 -2.3809 38 1 3.8859 6.8478 -0.7672 39 1 3.7555 5.5320 -3.5199 40 1 2.8677 5.0141 -2.0658 41 1 1.7053 7.1970 -1.9905 42 1 1.4375 6.3971 -3.5579 43 1 1.4041 9.8032 -2.0967 44 1 0.0206 10.0014 -3.1993 45 1 0.3502 8.4158 -2.4612 46 1 0.4589 7.3344 -4.7522 47 1 0.0291 8.9286 -5.4173 48 1 -0.4846 6.6184 -8.2391 49 1 3.2479 9.0446 -1.8340 50 1 4.1129 9.6017 -3.2862 51 1 5.6047 8.2914 -1.7903 52 1 5.3788 7.4750 -3.3562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528627061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:14 Heat of formation + Delta-G solvation = 7.465442 kcal Electronic energy + Delta-G solvation = -30059.199476 eV Core-core repulsion = 26061.591083 eV Total energy + Delta-G solvation = -3997.608392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.76787 -39.22829 -38.33317 -36.45741 -35.93409 -33.69440 -32.54354 -31.44696 -30.56529 -30.28110 -27.64091 -27.22232 -26.95370 -24.59490 -23.86548 -23.15682 -22.97499 -22.36196 -20.96170 -19.85435 -18.68706 -18.28198 -17.59248 -16.72535 -16.35580 -16.14565 -15.58545 -15.45162 -15.32365 -14.65495 -14.49414 -14.37693 -13.96500 -13.92606 -13.69018 -13.21729 -13.13719 -13.00667 -12.72708 -12.46119 -12.19793 -12.04543 -11.91485 -11.79161 -11.72705 -11.64958 -11.39584 -11.36128 -11.13036 -11.06814 -10.87577 -10.71721 -10.58658 -10.37881 -10.28520 -10.15386 -10.01345 -9.87740 -9.81539 -9.14583 -8.95234 -8.24081 -7.44895 -5.87259 -3.84834 0.96363 1.99468 2.63810 3.11473 3.40636 3.46638 3.50119 3.67147 3.95436 4.50220 4.57358 4.58198 4.67323 4.70039 4.71326 4.82755 4.96842 5.06489 5.09606 5.12452 5.28559 5.33841 5.39489 5.42775 5.49388 5.50706 5.54840 5.60486 5.63981 5.70779 5.77432 5.82780 5.83975 5.86913 5.97805 6.03954 6.05276 6.13106 6.24917 6.36273 6.43987 6.59281 6.66221 6.75164 6.75628 6.99921 7.55542 7.70294 7.93720 7.99356 8.04286 8.14145 8.59904 9.21119 9.76858 11.24795 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008982 B = 0.003024 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.511619 B = 9256.097055 C =10686.549036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.068 3.932 4 C -0.026 4.026 5 C 0.171 3.829 6 N -0.385 5.385 7 O 0.075 5.925 8 C 0.195 3.805 9 C -0.026 4.026 10 C -0.084 4.084 11 C -0.110 4.110 12 C 0.058 3.942 13 N -0.509 5.509 14 C 0.087 3.913 15 H 0.069 0.931 16 C -0.184 4.184 17 C 0.030 3.970 18 C -0.488 4.488 19 H 0.061 0.939 20 C 0.050 3.950 21 N -0.905 5.905 22 Si 0.889 3.111 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.275 1.275 26 C 0.053 3.947 27 C -0.106 4.106 28 N -0.472 5.472 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.257 0.743 49 H 0.023 0.977 50 H 0.071 0.929 51 H 0.063 0.937 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -6.251 17.681 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.065 4.065 5 C -0.102 4.102 6 N -0.093 5.093 7 O 0.016 5.984 8 C -0.025 4.025 9 C -0.065 4.065 10 C -0.104 4.104 11 C -0.148 4.148 12 C -0.070 4.070 13 N -0.232 5.232 14 C -0.021 4.021 15 H 0.087 0.913 16 C -0.243 4.243 17 C -0.007 4.007 18 C -0.526 4.526 19 H 0.079 0.921 20 C -0.149 4.149 21 N -0.546 5.546 22 Si 0.718 3.282 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.200 1.200 26 C -0.075 4.075 27 C -0.144 4.144 28 N -0.205 5.205 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.066 0.934 49 H 0.041 0.959 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.364 -7.258 17.656 20.842 hybrid contribution -0.161 0.388 -0.137 0.442 sum 8.203 -6.870 17.519 20.528 Atomic orbital electron populations 1.22783 0.80233 1.03003 1.00445 1.87808 1.20335 1.27216 1.95552 1.22367 0.92095 0.85230 1.01302 1.19692 0.93504 0.87301 1.05954 1.25518 1.01003 0.99848 0.83831 1.74633 1.16067 0.94693 1.23904 1.85290 1.58541 1.29382 1.25159 1.28954 0.95203 0.96536 0.81804 1.20496 0.98966 0.88815 0.98199 1.21265 0.94741 0.94702 0.99647 1.21676 0.96058 0.97222 0.99804 1.22045 0.96495 0.92070 0.96353 1.62039 1.15638 1.07788 1.37770 1.21905 0.90758 0.95041 0.94368 0.91296 1.22525 1.00778 1.01157 0.99799 1.19192 0.94096 0.95362 0.92025 1.21158 0.96385 1.37119 0.97983 0.92108 1.25001 0.94840 0.96398 0.98644 1.69962 1.12020 1.42769 1.29809 0.86642 0.80365 0.78583 0.82644 1.20905 1.21692 1.20031 1.22046 0.93620 0.96480 0.95366 1.21592 0.97678 0.94665 1.00474 1.71996 1.16624 1.03068 1.28861 0.89303 0.93954 0.93523 0.92953 0.92117 0.88344 0.87581 0.88025 0.86767 0.91188 0.90238 0.92439 0.96175 0.89424 0.94230 0.92615 0.92965 0.96399 0.96470 0.93369 0.95854 0.91055 0.91811 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.19 10.70 -35.23 -0.38 -4.56 16 3 C 0.07 0.70 5.92 37.16 0.22 0.92 16 4 C -0.03 -0.26 6.21 -27.88 -0.17 -0.43 16 5 C 0.17 2.10 7.47 -156.37 -1.17 0.93 16 6 N -0.38 -4.94 12.16 30.90 0.38 -4.56 16 7 O 0.08 0.90 11.31 18.09 0.20 1.10 16 8 C 0.20 2.20 6.98 -13.05 -0.09 2.11 16 9 C -0.03 -0.23 5.32 -27.88 -0.15 -0.38 16 10 C -0.08 -0.91 2.24 -90.50 -0.20 -1.12 16 11 C -0.11 -1.57 5.15 -26.65 -0.14 -1.70 16 12 C 0.06 0.99 4.53 -3.83 -0.02 0.97 16 13 N -0.51 -9.08 4.29 -226.68 -0.97 -10.05 16 14 C 0.09 1.72 2.26 -67.71 -0.15 1.56 16 15 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 16 C -0.18 -3.09 8.44 37.16 0.31 -2.78 16 17 C 0.03 0.75 4.37 -27.88 -0.12 0.63 16 18 C -0.49 -13.44 8.81 -34.44 -0.30 -13.74 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 21 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 22 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.05 0.75 5.14 -3.83 -0.02 0.73 16 27 C -0.11 -1.17 5.38 -26.65 -0.14 -1.31 16 28 N -0.47 -6.12 10.98 -9.86 -0.11 -6.23 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.06 0.83 7.01 -51.93 -0.36 0.47 16 41 H 0.02 0.33 6.57 -51.93 -0.34 -0.01 16 42 H 0.09 1.77 6.17 -51.93 -0.32 1.45 16 43 H 0.04 0.59 6.84 -51.93 -0.35 0.23 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.89 6.46 -51.93 -0.34 0.55 16 46 H 0.02 0.47 6.28 -51.93 -0.33 0.15 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.02 0.32 6.89 -51.93 -0.36 -0.04 16 50 H 0.07 0.99 8.01 -51.93 -0.42 0.58 16 51 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 408.66 15.07 6.16 6.16 Total: -1.00 -31.73 408.66 -9.25 -40.98 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -9.11 Total: -2.46 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.13 Total: -10.90 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.03 Total: -47.21 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.17 Total: -3.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.73 -9.25 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528627061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.447 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds