Wall clock time and date at job start Tue Mar 31 2020 20:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99849 * 2 1 4 4 C 1.53007 * 109.46615 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46617 * 180.02562 * 4 3 2 6 6 N 1.29950 * 126.28643 * 90.02783 * 5 4 3 7 7 O 1.21295 * 110.25295 * 179.97438 * 6 5 4 8 8 C 1.33648 * 109.81052 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.54977 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46795 * 269.96907 * 9 8 7 11 11 C 1.53122 * 109.52584 * 294.87466 * 10 9 8 12 12 C 1.53043 * 109.27607 * 182.50374 * 11 10 9 13 13 N 1.46852 * 109.57541 * 59.08660 * 12 11 10 14 14 C 1.46895 * 111.00290 * 174.19059 * 13 12 11 15 15 H 1.08998 * 109.47357 * 173.59776 * 14 13 12 16 16 C 1.52999 * 109.46769 * 53.59715 * 14 13 12 17 17 C 1.53004 * 109.47038 * 293.60237 * 14 13 12 18 18 C 1.50699 * 109.46550 * 295.99239 * 17 14 13 19 19 H 1.07996 * 120.00384 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99536 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00245 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47205 * 90.00523 * 22 20 18 24 24 H 1.48503 * 109.47017 * 210.00097 * 22 20 18 25 25 H 1.48494 * 109.47088 * 330.00120 * 22 20 18 26 26 C 1.46846 * 111.19705 * 298.28936 * 13 12 11 27 27 C 1.53043 * 109.52312 * 61.73998 * 26 13 12 28 28 N 1.31135 * 106.89526 * 359.76095 * 8 7 6 29 29 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46595 * 300.00025 * 1 2 3 31 31 H 1.09003 * 109.46899 * 59.99689 * 1 2 3 32 32 H 1.08998 * 109.46896 * 60.00562 * 3 2 1 33 33 H 1.09002 * 109.47411 * 300.00164 * 3 2 1 34 34 H 1.09002 * 109.47264 * 300.00130 * 4 3 2 35 35 H 1.08998 * 109.47130 * 60.00582 * 4 3 2 36 36 H 1.08998 * 109.47400 * 29.97064 * 9 8 7 37 37 H 1.08998 * 109.46740 * 149.97195 * 9 8 7 38 38 H 1.09000 * 109.52502 * 55.00344 * 10 9 8 39 39 H 1.09004 * 109.50275 * 302.38404 * 11 10 9 40 40 H 1.09000 * 109.50130 * 62.50059 * 11 10 9 41 41 H 1.08998 * 109.41011 * 299.06941 * 12 11 10 42 42 H 1.09002 * 109.45204 * 179.12582 * 12 11 10 43 43 H 1.09005 * 109.47237 * 60.00213 * 16 14 13 44 44 H 1.09004 * 109.47166 * 180.02562 * 16 14 13 45 45 H 1.09002 * 109.47465 * 299.99695 * 16 14 13 46 46 H 1.08994 * 109.46877 * 55.99327 * 17 14 13 47 47 H 1.08998 * 109.46603 * 175.99533 * 17 14 13 48 48 H 0.97001 * 120.00448 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.46193 * 301.72591 * 26 13 12 50 50 H 1.08996 * 109.46332 * 181.75838 * 26 13 12 51 51 H 1.09000 * 109.50243 * 180.88305 * 27 26 13 52 52 H 1.08999 * 109.53368 * 60.78277 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 7 4.4621 3.2630 1.0478 7 8 4.9364 4.3281 0.7133 8 6 4.9710 4.4097 -0.6203 9 6 5.4856 5.5680 -1.4355 10 6 4.3418 6.5463 -1.7102 11 6 3.2902 5.8691 -2.5935 12 6 2.1800 6.8717 -2.9162 13 7 2.7524 8.0342 -3.6073 14 6 1.6972 8.9532 -4.0543 15 1 2.1507 9.8572 -4.4607 16 6 0.8039 9.3198 -2.8676 17 6 0.8546 8.2746 -5.1363 18 6 1.7133 8.0021 -6.3443 19 1 2.7558 8.2843 -6.3406 20 6 1.1683 7.3917 -7.4540 21 7 -0.1010 7.0476 -7.4583 22 14 2.2328 7.0532 -8.9512 23 1 2.8528 5.7099 -8.8243 24 1 1.3935 7.0973 -10.1755 25 1 3.2982 8.0834 -9.0441 26 6 3.7298 8.7280 -2.7590 27 6 4.8871 7.7812 -2.4328 28 7 4.4758 3.2874 -1.0837 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8465 -0.8900 34 1 3.8575 0.6434 0.8891 35 1 3.8568 0.6439 -0.8909 36 1 6.2754 6.0780 -0.8840 37 1 5.8829 5.1987 -2.3809 38 1 3.8859 6.8478 -0.7672 39 1 3.7555 5.5320 -3.5199 40 1 2.8677 5.0141 -2.0658 41 1 1.7053 7.1970 -1.9905 42 1 1.4375 6.3971 -3.5579 43 1 1.4041 9.8032 -2.0967 44 1 0.0206 10.0014 -3.1993 45 1 0.3502 8.4158 -2.4612 46 1 0.4589 7.3344 -4.7522 47 1 0.0291 8.9286 -5.4173 48 1 -0.4846 6.6184 -8.2391 49 1 3.2479 9.0446 -1.8340 50 1 4.1129 9.6017 -3.2862 51 1 5.6047 8.2914 -1.7903 52 1 5.3788 7.4750 -3.3562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528627061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:13 Heat of formation + Delta-G solvation = -13.640607 kcal Electronic energy + Delta-G solvation = -30060.114703 eV Core-core repulsion = 26061.591083 eV Total energy + Delta-G solvation = -3998.523619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.67954 -40.45890 -39.12715 -37.51818 -36.97777 -35.07188 -34.19678 -32.50692 -31.71466 -31.49120 -29.27657 -28.51758 -27.66521 -25.49221 -25.30950 -24.53990 -24.16082 -23.50160 -21.91222 -21.05801 -20.04840 -19.20722 -18.48956 -18.31997 -17.52929 -17.14874 -16.96894 -16.51105 -16.28422 -16.11623 -15.74413 -15.45878 -15.23783 -14.84652 -14.67277 -14.44390 -14.34590 -14.18532 -13.78037 -13.62779 -13.51665 -13.39452 -13.17220 -13.10598 -12.86947 -12.60124 -12.58866 -12.48999 -12.39967 -12.33054 -12.25881 -12.05720 -12.02097 -11.85774 -11.59880 -11.35715 -11.24191 -11.06100 -10.95289 -10.80068 -10.73139 -10.45076 -8.82551 -8.07702 -6.12196 0.08395 1.09104 1.43304 1.44559 1.54879 1.80685 2.31616 2.49304 2.86144 3.12870 3.16951 3.31156 3.74269 3.78175 3.83686 3.88888 3.94662 4.09287 4.19288 4.25519 4.38568 4.40953 4.44050 4.44607 4.45801 4.49578 4.55424 4.56758 4.63428 4.71919 4.75250 4.79180 4.79836 4.80914 4.90485 4.95881 5.00319 5.04172 5.09468 5.13725 5.24259 5.27389 5.32201 5.34149 5.53410 5.59848 5.73820 5.92294 6.00143 6.36265 6.53180 6.62797 7.02181 7.10857 7.53727 9.04522 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008982 B = 0.003024 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.511619 B = 9256.097055 C =10686.549036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.073 3.927 4 C -0.023 4.023 5 C 0.166 3.834 6 N -0.399 5.399 7 O 0.077 5.923 8 C 0.201 3.799 9 C -0.020 4.020 10 C -0.074 4.074 11 C -0.102 4.102 12 C 0.065 3.935 13 N -0.529 5.529 14 C 0.095 3.905 15 H 0.067 0.933 16 C -0.173 4.173 17 C 0.036 3.964 18 C -0.494 4.494 19 H 0.061 0.939 20 C -0.007 4.007 21 N -0.943 5.943 22 Si 0.956 3.044 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.262 1.262 26 C 0.049 3.951 27 C -0.099 4.099 28 N -0.500 5.500 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.029 0.971 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.045 0.955 46 H -0.009 1.009 47 H -0.012 1.012 48 H 0.257 0.743 49 H 0.036 0.964 50 H 0.074 0.926 51 H 0.105 0.895 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 -5.571 19.044 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.005 4.005 4 C -0.062 4.062 5 C -0.107 4.107 6 N -0.108 5.108 7 O 0.019 5.981 8 C -0.019 4.019 9 C -0.058 4.058 10 C -0.094 4.094 11 C -0.140 4.140 12 C -0.063 4.063 13 N -0.253 5.253 14 C -0.013 4.013 15 H 0.085 0.915 16 C -0.232 4.232 17 C -0.001 4.001 18 C -0.532 4.532 19 H 0.079 0.921 20 C -0.202 4.202 21 N -0.585 5.585 22 Si 0.782 3.218 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.187 1.187 26 C -0.078 4.078 27 C -0.137 4.137 28 N -0.234 5.234 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.161 0.839 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.009 0.991 47 H 0.006 0.994 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.092 0.908 51 H 0.123 0.877 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.977 -6.566 19.030 22.929 hybrid contribution -1.036 0.184 -0.557 1.190 sum 9.941 -6.382 18.473 21.927 Atomic orbital electron populations 1.22972 0.79031 1.04318 1.00779 1.87783 1.21727 1.27262 1.95599 1.22280 0.92323 0.85163 1.00719 1.19740 0.93192 0.86622 1.06650 1.25812 1.00858 1.00396 0.83626 1.74614 1.16740 0.95171 1.24296 1.85265 1.58452 1.29029 1.25397 1.29417 0.94127 0.96622 0.81690 1.20627 0.98824 0.87669 0.98688 1.21155 0.94330 0.94920 0.98968 1.21564 0.96178 0.96511 0.99712 1.21897 0.96628 0.92354 0.95447 1.61926 1.15570 1.08000 1.39808 1.21589 0.91186 0.94533 0.94026 0.91467 1.22382 1.00551 1.01023 0.99226 1.19050 0.93814 0.93954 0.93302 1.21488 0.96540 1.36362 0.98840 0.92072 1.25864 0.96051 0.96420 1.01908 1.70102 1.13856 1.43896 1.30694 0.85582 0.78807 0.78649 0.78788 1.20524 1.21471 1.18667 1.22200 0.93465 0.97082 0.95062 1.21585 0.97002 0.94063 1.01013 1.72010 1.17665 1.04163 1.29562 0.87570 0.93017 0.93802 0.92787 0.93410 0.87154 0.87335 0.83884 0.86351 0.90290 0.92194 0.93094 0.95260 0.94103 0.91303 0.92724 0.93631 0.99079 0.99402 0.93435 0.94621 0.90765 0.87684 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.57 10.70 -148.98 -1.59 -10.16 16 3 C 0.07 1.52 5.92 71.98 0.43 1.95 16 4 C -0.02 -0.47 6.21 29.85 0.19 -0.28 16 5 C 0.17 3.97 7.47 138.46 1.03 5.00 16 6 N -0.40 -9.78 12.16 -60.31 -0.73 -10.51 16 7 O 0.08 1.68 11.31 74.79 0.85 2.53 16 8 C 0.20 4.12 6.98 88.38 0.62 4.73 16 9 C -0.02 -0.28 5.32 29.85 0.16 -0.12 16 10 C -0.07 -1.39 2.24 -10.71 -0.02 -1.42 16 11 C -0.10 -2.87 5.15 30.65 0.16 -2.71 16 12 C 0.06 2.24 4.53 86.33 0.39 2.63 16 13 N -0.53 -18.65 4.29 -871.09 -3.74 -22.38 16 14 C 0.10 3.78 2.26 44.92 0.10 3.88 16 15 H 0.07 2.68 7.98 -2.39 -0.02 2.66 16 16 C -0.17 -5.72 8.44 71.98 0.61 -5.11 16 17 C 0.04 1.88 4.37 29.85 0.13 2.01 16 18 C -0.49 -27.91 8.81 25.60 0.23 -27.69 16 19 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 20 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 21 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 22 Si 0.96 45.53 29.54 68.60 2.03 47.55 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.05 1.24 5.14 86.33 0.44 1.69 16 27 C -0.10 -1.80 5.38 30.65 0.16 -1.63 16 28 N -0.50 -12.57 10.98 -303.18 -3.33 -15.90 16 29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.05 1.49 7.01 -2.39 -0.02 1.47 16 41 H 0.03 0.94 6.57 -2.39 -0.02 0.93 16 42 H 0.04 1.77 6.17 -2.39 -0.01 1.75 16 43 H 0.07 1.87 6.84 -2.38 -0.02 1.86 16 44 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.04 1.55 6.46 -2.39 -0.02 1.53 16 46 H -0.01 -0.52 6.28 -2.39 -0.02 -0.53 16 47 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 48 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.04 0.83 6.89 -2.39 -0.02 0.81 16 50 H 0.07 1.84 8.01 -2.39 -0.02 1.82 16 51 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.60 408.66 0.98 -70.61 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.89 Total: 11.81 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 6.33 Total: -15.36 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -7.51 Total: -106.98 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.75 Total: -7.64 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.60 0.98 -70.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528627061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.973 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds