Wall clock time and date at job start Tue Mar 31 2020 20:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47086 * 2 1 4 4 C 1.53000 * 109.47175 * 119.99510 * 2 1 3 5 5 N 1.46496 * 109.47386 * 175.00217 * 4 2 1 6 6 C 1.46766 * 124.35141 * 90.00016 * 5 4 2 7 7 C 1.54482 * 105.47582 * 197.01960 * 6 5 4 8 8 C 1.54631 * 101.76143 * 334.58397 * 7 6 5 9 9 C 1.34418 * 124.34890 * 269.70038 * 5 4 2 10 10 O 1.21281 * 124.94049 * 359.57973 * 9 5 4 11 11 N 1.46494 * 109.47204 * 239.99424 * 2 1 3 12 12 C 1.34779 * 119.99736 * 85.00356 * 11 2 1 13 13 O 1.21588 * 120.00172 * 5.08664 * 12 11 2 14 14 N 1.34783 * 120.00115 * 185.09093 * 12 11 2 15 15 C 1.46921 * 120.62679 * 354.97532 * 14 12 11 16 16 C 1.53190 * 108.89547 * 126.34228 * 15 14 12 17 17 C 1.53357 * 109.14713 * 54.57282 * 16 15 14 18 18 C 1.53000 * 109.41436 * 178.67972 * 17 16 15 19 19 C 1.50704 * 109.46971 * 295.12534 * 18 17 16 20 20 H 1.07995 * 120.00182 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99729 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00221 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99557 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47120 * 60.00378 * 23 21 19 25 25 H 1.48506 * 109.46879 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47230 * 299.99891 * 23 21 19 27 27 C 1.53034 * 109.60714 * 298.71489 * 17 16 15 28 28 C 1.46921 * 120.62959 * 174.99198 * 14 12 11 29 29 H 1.09005 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46874 * 300.00248 * 1 2 3 31 31 H 1.08998 * 109.46782 * 60.00663 * 1 2 3 32 32 H 1.09000 * 109.47204 * 295.00425 * 4 2 1 33 33 H 1.09007 * 109.47103 * 55.00192 * 4 2 1 34 34 H 1.09000 * 110.24136 * 316.01942 * 6 5 4 35 35 H 1.08998 * 110.24495 * 77.92779 * 6 5 4 36 36 H 1.08992 * 110.96855 * 92.70163 * 7 6 5 37 37 H 1.08997 * 110.97031 * 216.46963 * 7 6 5 38 38 H 1.09000 * 110.48459 * 143.47578 * 8 7 6 39 39 H 1.09002 * 110.48444 * 265.98738 * 8 7 6 40 40 H 0.96991 * 120.00272 * 264.99718 * 11 2 1 41 41 H 1.09000 * 109.58462 * 246.19657 * 15 14 12 42 42 H 1.09007 * 109.59207 * 6.48194 * 15 14 12 43 43 H 1.08993 * 109.49923 * 174.65259 * 16 15 14 44 44 H 1.08999 * 109.49796 * 294.75350 * 16 15 14 45 45 H 1.08993 * 109.42167 * 58.75531 * 17 16 15 46 46 H 1.08993 * 109.47789 * 55.12582 * 18 17 16 47 47 H 1.08999 * 109.46920 * 175.13449 * 18 17 16 48 48 H 0.96997 * 120.00008 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.49963 * 301.42380 * 27 17 16 50 50 H 1.09001 * 109.52635 * 181.34468 * 27 17 16 51 51 H 1.08999 * 109.59278 * 353.38141 * 28 14 12 52 52 H 1.08999 * 109.58241 * 113.66034 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.4249 0.1773 1.7306 7 6 5.7896 -0.1230 1.0718 8 6 5.6567 -1.6283 0.7438 9 6 4.1648 -1.8570 0.6407 10 8 3.6442 -2.8277 0.1331 11 7 2.0184 -0.6907 -1.1960 12 6 2.1472 -0.0184 -2.3571 13 8 1.9471 1.1805 -2.3908 14 7 2.4976 -0.6750 -3.4808 15 6 2.8492 -2.1008 -3.4357 16 6 1.9879 -2.8565 -4.4525 17 6 2.1536 -2.2083 -5.8324 18 6 1.3213 -2.9787 -6.8594 19 6 1.8682 -4.3756 -7.0031 20 1 2.7235 -4.6833 -6.4200 21 6 1.2765 -5.2609 -7.8790 22 7 0.2346 -4.8864 -8.5888 23 14 1.9541 -6.9926 -8.0566 24 1 1.8878 -7.6869 -6.7456 25 1 1.1463 -7.7404 -9.0535 26 1 3.3661 -6.9275 -8.5115 27 6 1.6778 -0.7548 -5.7776 28 6 2.5357 0.0216 -4.7738 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 1.6054 -1.7198 1.2953 34 1 4.0904 1.1801 1.4648 35 1 4.4977 0.0792 2.8137 36 1 5.9216 0.4640 0.1630 37 1 6.6073 0.0532 1.7705 38 1 6.1469 -1.8573 -0.2024 39 1 6.0787 -2.2324 1.5470 40 1 2.2491 -1.6318 -1.1524 41 1 3.9029 -2.2253 -3.6854 42 1 2.6619 -2.4920 -2.4357 43 1 2.3057 -3.8981 -4.4956 44 1 0.9416 -2.8069 -4.1511 45 1 3.2040 -2.2358 -6.1220 46 1 0.2851 -3.0269 -6.5249 47 1 1.3692 -2.4691 -7.8217 48 1 -0.1814 -5.5091 -9.2053 49 1 0.6343 -0.7252 -5.4638 50 1 1.7738 -0.3026 -6.7647 51 1 2.1392 1.0303 -4.6574 52 1 3.5641 0.0724 -5.1313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563038895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:38 Heat of formation + Delta-G solvation = -75.314710 kcal Electronic energy + Delta-G solvation = -31008.563671 eV Core-core repulsion = 27007.365662 eV Total energy + Delta-G solvation = -4001.198009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90919 -40.00345 -37.62822 -36.72464 -35.87575 -33.94089 -32.78151 -32.01584 -30.95014 -30.05385 -27.91765 -27.81948 -26.57402 -24.58403 -22.84479 -22.44007 -22.27781 -21.22762 -19.90999 -19.81542 -19.09148 -17.87366 -17.11660 -16.94315 -16.28305 -16.13465 -15.58447 -15.19111 -14.82052 -14.51100 -14.23635 -14.12617 -14.00089 -13.72956 -13.60981 -13.34368 -13.19356 -12.99490 -12.85082 -12.74417 -12.61316 -12.36587 -12.10217 -12.00843 -11.84913 -11.72980 -11.43941 -11.28641 -11.11320 -10.93591 -10.73532 -10.62889 -10.42403 -10.09002 -10.05248 -9.86545 -9.55797 -9.22493 -9.15587 -8.95256 -8.90099 -8.31292 -8.13998 -5.95943 -3.97726 2.28588 2.60764 2.88037 3.35472 3.39980 3.41589 3.42390 3.98263 4.05033 4.10598 4.40229 4.48879 4.51799 4.63653 4.79165 5.00200 5.01939 5.09967 5.18768 5.25638 5.32273 5.35868 5.39177 5.42305 5.44623 5.51791 5.58793 5.59175 5.61469 5.78014 5.80122 5.88168 6.02034 6.08060 6.17425 6.19906 6.45524 6.46568 6.58885 6.63035 6.74295 6.77705 7.04293 7.07344 7.17223 7.22509 7.71201 7.86436 7.87382 8.04118 8.15911 8.46863 8.80387 9.08644 9.65820 11.15339 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.002900 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.590705 B = 9653.192173 C =10483.121589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.089 0.911 4 C 0.116 3.884 5 N -0.617 5.617 6 C 0.102 3.898 7 C -0.132 4.132 8 C -0.156 4.156 9 C 0.518 3.482 10 O -0.529 6.529 11 N -0.744 5.744 12 C 0.709 3.291 13 O -0.604 6.604 14 N -0.622 5.622 15 C 0.109 3.891 16 C -0.116 4.116 17 C -0.079 4.079 18 C 0.028 3.972 19 C -0.516 4.516 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.889 3.111 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.129 4.129 28 C 0.131 3.869 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.403 0.597 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.015 0.985 47 H 0.016 0.984 48 H 0.260 0.740 49 H 0.060 0.940 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 11.878 24.425 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.107 0.893 4 C -0.007 4.007 5 N -0.351 5.351 6 C -0.021 4.021 7 C -0.170 4.170 8 C -0.196 4.196 9 C 0.306 3.694 10 O -0.406 6.406 11 N -0.404 5.404 12 C 0.410 3.590 13 O -0.484 6.484 14 N -0.358 5.358 15 C -0.014 4.014 16 C -0.155 4.155 17 C -0.098 4.098 18 C -0.009 4.009 19 C -0.554 4.554 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.168 4.168 28 C 0.008 3.992 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.243 0.757 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.102 0.898 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.214 12.160 24.009 28.139 hybrid contribution 0.350 -1.484 -0.158 1.533 sum 8.564 10.677 23.851 27.499 Atomic orbital electron populations 1.22167 0.94729 1.02541 1.02811 1.21180 0.94136 0.97548 0.83589 0.89312 1.21808 0.78536 1.02637 0.97721 1.48225 1.05985 1.22193 1.58693 1.22101 0.89127 0.92734 0.98158 1.22588 0.96834 0.95419 1.02144 1.22331 0.94241 0.97808 1.05248 1.20950 0.90019 0.81763 0.76635 1.90728 1.74395 1.30718 1.44734 1.45475 1.71844 1.14502 1.08591 1.15827 0.77764 0.84900 0.80473 1.90845 1.59515 1.12805 1.85262 1.47334 1.71106 1.10753 1.06621 1.21796 0.99468 0.79974 1.00129 1.21931 0.99124 0.99969 0.94436 1.21227 1.00367 0.92567 0.95635 1.19115 0.94741 0.94164 0.92851 1.21218 1.14173 0.97215 1.22803 0.92647 1.25018 0.95053 0.98517 0.95869 1.69955 1.21773 1.35641 1.26207 0.86709 0.78956 0.84812 0.77828 1.20260 1.21400 1.20297 1.22035 0.99470 0.97161 0.98094 1.21514 0.99869 0.96383 0.81409 0.92187 0.91645 0.91425 0.88683 0.89286 0.90222 0.90960 0.89867 0.89124 0.87871 0.87852 0.75678 0.91858 0.91110 0.89823 0.92425 0.92411 0.96690 0.96616 0.93035 0.92171 0.91160 0.89769 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.14 1.50 2.92 -67.93 -0.20 1.30 16 3 H 0.09 1.02 7.51 -51.93 -0.39 0.63 16 4 C 0.12 0.91 5.54 -4.04 -0.02 0.89 16 5 N -0.62 -5.09 2.80 -172.41 -0.48 -5.58 16 6 C 0.10 0.53 7.35 -3.12 -0.02 0.51 16 7 C -0.13 -0.65 7.18 -25.10 -0.18 -0.83 16 8 C -0.16 -1.09 6.86 -26.74 -0.18 -1.27 16 9 C 0.52 5.43 7.30 -10.86 -0.08 5.35 16 10 O -0.53 -7.53 15.89 5.56 0.09 -7.44 16 11 N -0.74 -10.15 4.44 -58.67 -0.26 -10.41 16 12 C 0.71 11.80 8.26 -86.91 -0.72 11.09 16 13 O -0.60 -11.54 15.41 5.29 0.08 -11.45 16 14 N -0.62 -10.24 2.97 -178.51 -0.53 -10.77 16 15 C 0.11 1.75 6.42 -3.71 -0.02 1.73 16 16 C -0.12 -2.20 5.21 -26.45 -0.14 -2.33 16 17 C -0.08 -1.61 2.10 -90.42 -0.19 -1.80 16 18 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 19 C -0.52 -14.36 8.39 -34.44 -0.29 -14.65 16 20 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 23 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.13 -2.31 5.36 -26.62 -0.14 -2.45 16 28 C 0.13 2.13 6.42 -3.72 -0.02 2.11 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 5.70 3.85 -40.82 -0.16 5.54 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.09 5.57 -51.93 -0.29 0.81 16 43 H 0.08 1.67 6.93 -51.93 -0.36 1.31 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 51 H 0.08 1.40 7.03 -51.93 -0.37 1.03 16 52 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -34.66 405.08 -10.45 -45.11 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -9.09 Total: 3.59 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.08 Total: 0.49 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.54 Total: -53.14 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.66 -10.45 -45.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563038895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.202 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds