Wall clock time and date at job start Tue Mar 31 2020 20:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47086 * 2 1 4 4 C 1.53000 * 109.47175 * 119.99510 * 2 1 3 5 5 N 1.46496 * 109.47386 * 175.00217 * 4 2 1 6 6 C 1.46766 * 124.35141 * 90.00016 * 5 4 2 7 7 C 1.54482 * 105.47582 * 197.01960 * 6 5 4 8 8 C 1.54631 * 101.76143 * 334.58397 * 7 6 5 9 9 C 1.34418 * 124.34890 * 269.70038 * 5 4 2 10 10 O 1.21281 * 124.94049 * 359.57973 * 9 5 4 11 11 N 1.46494 * 109.47204 * 239.99424 * 2 1 3 12 12 C 1.34779 * 119.99736 * 85.00356 * 11 2 1 13 13 O 1.21588 * 120.00172 * 5.08664 * 12 11 2 14 14 N 1.34783 * 120.00115 * 185.09093 * 12 11 2 15 15 C 1.46921 * 120.62679 * 354.97532 * 14 12 11 16 16 C 1.53190 * 108.89547 * 126.34228 * 15 14 12 17 17 C 1.53357 * 109.14713 * 54.57282 * 16 15 14 18 18 C 1.53000 * 109.41436 * 178.67972 * 17 16 15 19 19 C 1.50704 * 109.46971 * 295.12534 * 18 17 16 20 20 H 1.07995 * 120.00182 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99729 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00221 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99557 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47120 * 60.00378 * 23 21 19 25 25 H 1.48506 * 109.46879 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47230 * 299.99891 * 23 21 19 27 27 C 1.53034 * 109.60714 * 298.71489 * 17 16 15 28 28 C 1.46921 * 120.62959 * 174.99198 * 14 12 11 29 29 H 1.09005 * 109.46925 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46874 * 300.00248 * 1 2 3 31 31 H 1.08998 * 109.46782 * 60.00663 * 1 2 3 32 32 H 1.09000 * 109.47204 * 295.00425 * 4 2 1 33 33 H 1.09007 * 109.47103 * 55.00192 * 4 2 1 34 34 H 1.09000 * 110.24136 * 316.01942 * 6 5 4 35 35 H 1.08998 * 110.24495 * 77.92779 * 6 5 4 36 36 H 1.08992 * 110.96855 * 92.70163 * 7 6 5 37 37 H 1.08997 * 110.97031 * 216.46963 * 7 6 5 38 38 H 1.09000 * 110.48459 * 143.47578 * 8 7 6 39 39 H 1.09002 * 110.48444 * 265.98738 * 8 7 6 40 40 H 0.96991 * 120.00272 * 264.99718 * 11 2 1 41 41 H 1.09000 * 109.58462 * 246.19657 * 15 14 12 42 42 H 1.09007 * 109.59207 * 6.48194 * 15 14 12 43 43 H 1.08993 * 109.49923 * 174.65259 * 16 15 14 44 44 H 1.08999 * 109.49796 * 294.75350 * 16 15 14 45 45 H 1.08993 * 109.42167 * 58.75531 * 17 16 15 46 46 H 1.08993 * 109.47789 * 55.12582 * 18 17 16 47 47 H 1.08999 * 109.46920 * 175.13449 * 18 17 16 48 48 H 0.96997 * 120.00008 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.49963 * 301.42380 * 27 17 16 50 50 H 1.09001 * 109.52635 * 181.34468 * 27 17 16 51 51 H 1.08999 * 109.59278 * 353.38141 * 28 14 12 52 52 H 1.08999 * 109.58241 * 113.66034 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.4249 0.1773 1.7306 7 6 5.7896 -0.1230 1.0718 8 6 5.6567 -1.6283 0.7438 9 6 4.1648 -1.8570 0.6407 10 8 3.6442 -2.8277 0.1331 11 7 2.0184 -0.6907 -1.1960 12 6 2.1472 -0.0184 -2.3571 13 8 1.9471 1.1805 -2.3908 14 7 2.4976 -0.6750 -3.4808 15 6 2.8492 -2.1008 -3.4357 16 6 1.9879 -2.8565 -4.4525 17 6 2.1536 -2.2083 -5.8324 18 6 1.3213 -2.9787 -6.8594 19 6 1.8682 -4.3756 -7.0031 20 1 2.7235 -4.6833 -6.4200 21 6 1.2765 -5.2609 -7.8790 22 7 0.2346 -4.8864 -8.5888 23 14 1.9541 -6.9926 -8.0566 24 1 1.8878 -7.6869 -6.7456 25 1 1.1463 -7.7404 -9.0535 26 1 3.3661 -6.9275 -8.5115 27 6 1.6778 -0.7548 -5.7776 28 6 2.5357 0.0216 -4.7738 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7516 -0.1582 2.1370 33 1 1.6054 -1.7198 1.2953 34 1 4.0904 1.1801 1.4648 35 1 4.4977 0.0792 2.8137 36 1 5.9216 0.4640 0.1630 37 1 6.6073 0.0532 1.7705 38 1 6.1469 -1.8573 -0.2024 39 1 6.0787 -2.2324 1.5470 40 1 2.2491 -1.6318 -1.1524 41 1 3.9029 -2.2253 -3.6854 42 1 2.6619 -2.4920 -2.4357 43 1 2.3057 -3.8981 -4.4956 44 1 0.9416 -2.8069 -4.1511 45 1 3.2040 -2.2358 -6.1220 46 1 0.2851 -3.0269 -6.5249 47 1 1.3692 -2.4691 -7.8217 48 1 -0.1814 -5.5091 -9.2053 49 1 0.6343 -0.7252 -5.4638 50 1 1.7738 -0.3026 -6.7647 51 1 2.1392 1.0303 -4.6574 52 1 3.5641 0.0724 -5.1313 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563038895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:37 Heat of formation + Delta-G solvation = -96.444414 kcal Electronic energy + Delta-G solvation = -31009.479924 eV Core-core repulsion = 27007.365662 eV Total energy + Delta-G solvation = -4002.114262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79382 -41.09205 -39.02087 -37.55535 -36.84076 -35.70975 -34.18866 -33.33335 -32.16461 -31.22809 -29.65933 -28.43304 -27.25138 -26.36020 -24.27742 -23.87868 -22.88676 -22.41915 -21.29392 -20.72034 -20.30542 -19.15077 -18.41242 -17.78179 -17.76914 -17.14754 -16.55841 -16.52731 -16.21731 -15.94321 -15.39895 -15.23994 -14.89086 -14.85946 -14.66986 -14.48165 -14.42092 -14.34114 -14.00188 -13.89624 -13.52732 -13.45418 -13.31979 -13.06129 -12.94341 -12.83038 -12.74594 -12.51380 -12.35474 -12.28177 -12.21793 -12.14580 -11.83051 -11.79642 -11.42280 -11.25915 -11.01753 -10.87557 -10.82478 -10.52319 -10.25560 -9.69703 -9.47299 -8.16873 -6.26530 1.40388 1.43125 1.50529 1.54645 1.64103 2.03424 2.14583 2.42304 2.87143 3.16513 3.46037 3.65181 3.73503 3.84928 3.97630 4.03571 4.05700 4.08260 4.15565 4.18066 4.30325 4.35000 4.41513 4.47430 4.61226 4.62057 4.69510 4.72096 4.76274 4.77392 4.84958 4.90714 4.90901 4.95953 5.05829 5.07490 5.21223 5.23236 5.26625 5.29459 5.33894 5.48522 5.52410 5.56377 5.66587 5.78657 5.88028 5.95669 6.13601 6.28596 6.88979 6.89763 7.16066 7.42006 7.51630 8.94958 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.002900 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.590705 B = 9653.192173 C =10483.121589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.082 0.918 4 C 0.119 3.881 5 N -0.616 5.616 6 C 0.097 3.903 7 C -0.124 4.124 8 C -0.155 4.155 9 C 0.502 3.498 10 O -0.578 6.578 11 N -0.737 5.737 12 C 0.704 3.296 13 O -0.630 6.630 14 N -0.626 5.626 15 C 0.124 3.876 16 C -0.109 4.109 17 C -0.071 4.071 18 C 0.035 3.965 19 C -0.529 4.529 20 H 0.065 0.935 21 C -0.002 4.002 22 N -0.937 5.937 23 Si 0.960 3.040 24 H -0.268 1.268 25 H -0.287 1.287 26 H -0.265 1.265 27 C -0.121 4.121 28 C 0.138 3.862 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.036 0.964 32 H 0.134 0.866 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.402 0.598 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.064 0.936 46 H -0.017 1.017 47 H -0.010 1.010 48 H 0.261 0.739 49 H 0.044 0.956 50 H 0.077 0.923 51 H 0.083 0.917 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.868 12.161 27.007 31.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.100 0.900 4 C -0.004 4.004 5 N -0.349 5.349 6 C -0.024 4.024 7 C -0.161 4.161 8 C -0.194 4.194 9 C 0.292 3.708 10 O -0.458 6.458 11 N -0.396 5.396 12 C 0.406 3.594 13 O -0.512 6.512 14 N -0.362 5.362 15 C 0.001 3.999 16 C -0.148 4.148 17 C -0.089 4.089 18 C -0.002 4.002 19 C -0.567 4.567 20 H 0.083 0.917 21 C -0.200 4.200 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.190 1.190 27 C -0.159 4.159 28 C 0.015 3.985 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.152 0.848 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.242 0.758 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.001 0.999 47 H 0.008 0.992 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.096 0.904 51 H 0.101 0.899 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.256 12.475 26.643 31.155 hybrid contribution -0.336 -1.519 -0.942 1.818 sum 9.920 10.956 25.701 29.648 Atomic orbital electron populations 1.22117 0.94208 1.02442 1.02914 1.21436 0.94584 0.97259 0.83495 0.90014 1.21846 0.78551 1.02367 0.97586 1.48403 1.06446 1.22234 1.57782 1.22367 0.88439 0.92006 0.99626 1.22611 0.97724 0.93428 1.02384 1.22373 0.91776 0.99683 1.05619 1.21620 0.91640 0.81516 0.76054 1.90690 1.75527 1.32666 1.46935 1.45591 1.70970 1.14373 1.08683 1.15995 0.77606 0.84713 0.81097 1.90820 1.60728 1.13940 1.85748 1.47379 1.71238 1.10791 1.06834 1.21637 0.99407 0.79391 0.99461 1.21796 0.98850 0.99687 0.94421 1.21068 0.99534 0.93451 0.94858 1.18995 0.93877 0.94321 0.93055 1.21637 1.14314 0.98146 1.22618 0.91714 1.25960 0.95305 1.03141 0.95557 1.70102 1.23294 1.37276 1.27082 0.85576 0.78595 0.79282 0.78074 1.19255 1.21236 1.19028 1.21920 0.98888 0.95857 0.99240 1.21444 1.00426 0.95749 0.80838 0.92358 0.88325 0.94479 0.84810 0.90216 0.89766 0.88237 0.90993 0.86208 0.88592 0.86091 0.75813 0.90389 0.90381 0.90943 0.93974 0.91761 0.99860 0.99209 0.92997 0.93731 0.90447 0.89902 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.48 71.98 0.68 -2.28 16 2 C 0.14 2.75 2.92 44.99 0.13 2.88 16 3 H 0.08 1.78 7.51 -2.39 -0.02 1.76 16 4 C 0.12 1.62 5.54 86.38 0.48 2.10 16 5 N -0.62 -8.89 2.80 -817.97 -2.29 -11.17 16 6 C 0.10 0.71 7.35 86.83 0.64 1.35 16 7 C -0.12 -0.86 7.18 31.65 0.23 -0.63 16 8 C -0.15 -1.86 6.86 30.59 0.21 -1.65 16 9 C 0.50 9.94 7.30 87.90 0.64 10.58 16 10 O -0.58 -16.40 15.89 -3.03 -0.05 -16.45 16 11 N -0.74 -19.85 4.44 -457.80 -2.03 -21.88 16 12 C 0.70 23.27 8.26 179.05 1.48 24.75 16 13 O -0.63 -23.95 15.41 -3.99 -0.06 -24.01 16 14 N -0.63 -20.31 2.97 -836.93 -2.49 -22.80 16 15 C 0.12 3.90 6.42 86.36 0.55 4.46 16 16 C -0.11 -4.17 5.21 30.78 0.16 -4.01 16 17 C -0.07 -2.91 2.10 -10.66 -0.02 -2.93 16 18 C 0.03 1.84 4.45 29.85 0.13 1.97 16 19 C -0.53 -29.92 8.39 25.60 0.21 -29.71 16 20 H 0.06 3.47 7.06 -2.91 -0.02 3.45 16 21 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 22 N -0.94 -58.11 13.29 21.45 0.28 -57.83 16 23 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 C -0.12 -4.37 5.36 30.67 0.16 -4.20 16 28 C 0.14 4.40 6.42 86.36 0.55 4.95 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.28 7.92 -2.38 -0.02 1.27 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.40 11.29 3.85 -92.71 -0.36 10.93 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.08 2.39 5.57 -2.38 -0.01 2.38 16 43 H 0.07 2.92 6.93 -2.39 -0.02 2.91 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 46 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 47 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 48 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 49 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 51 H 0.08 2.71 7.03 -2.39 -0.02 2.69 16 52 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -77.78 405.08 2.64 -75.13 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.54 Total: 24.24 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.71 Total: 7.95 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -6.52 Total: -113.68 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.11 Total: -40.46 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -77.78 2.64 -75.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563038895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.312 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds