Wall clock time and date at job start Tue Mar 31 2020 20:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47758 * 2 1 4 4 C 1.53004 * 109.47075 * 119.99713 * 2 1 3 5 5 C 1.50698 * 109.47000 * 295.00382 * 4 2 1 6 6 H 1.08000 * 120.00252 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99889 * 359.72180 * 7 5 4 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46987 * 269.72201 * 9 7 5 11 11 H 1.48493 * 109.47411 * 29.72330 * 9 7 5 12 12 H 1.48500 * 109.46893 * 149.72258 * 9 7 5 13 13 C 1.52997 * 109.47312 * 239.99696 * 2 1 3 14 14 N 1.46897 * 109.47008 * 64.16379 * 13 2 1 15 15 C 1.46900 * 111.00004 * 200.43117 * 14 13 2 16 16 C 1.53244 * 109.33835 * 172.75078 * 15 14 13 17 17 N 1.47073 * 108.52193 * 53.83205 * 16 15 14 18 18 C 1.34778 * 120.88021 * 128.79643 * 17 16 15 19 19 O 1.21358 * 119.99447 * 178.32859 * 18 17 16 20 20 C 1.49448 * 120.00394 * 358.32617 * 18 17 16 21 21 O 1.21352 * 119.99758 * 6.51039 * 20 18 17 22 22 N 1.34771 * 120.00407 * 186.51369 * 20 18 17 23 23 C 1.47024 * 125.64658 * 359.68999 * 22 20 18 24 24 C 1.54307 * 107.27717 * 180.96935 * 23 22 20 25 25 C 1.55163 * 102.86509 * 22.52604 * 24 23 22 26 26 C 1.47422 * 125.65236 * 179.97438 * 22 20 18 27 27 C 1.47079 * 118.23717 * 308.81018 * 17 16 15 28 28 C 1.46902 * 110.99907 * 76.13199 * 14 13 2 29 29 H 1.09003 * 109.46817 * 65.01227 * 1 2 3 30 30 H 1.08997 * 109.47436 * 185.01338 * 1 2 3 31 31 H 1.09000 * 109.47180 * 305.02079 * 1 2 3 32 32 H 1.08990 * 109.47173 * 174.99572 * 4 2 1 33 33 H 1.09001 * 109.46698 * 55.00021 * 4 2 1 34 34 H 0.97008 * 120.00032 * 0.27019 * 8 7 5 35 35 H 1.09002 * 109.47438 * 184.16787 * 13 2 1 36 36 H 1.09007 * 109.47233 * 304.16886 * 13 2 1 37 37 H 1.08999 * 109.49485 * 292.70601 * 15 14 13 38 38 H 1.08994 * 109.49561 * 52.78955 * 15 14 13 39 39 H 1.09001 * 109.62519 * 294.11406 * 16 15 14 40 40 H 1.09004 * 109.62606 * 173.54173 * 16 15 14 41 41 H 1.09002 * 109.88348 * 300.51748 * 23 22 20 42 42 H 1.09005 * 109.88246 * 61.67511 * 23 22 20 43 43 H 1.09002 * 110.92779 * 264.11376 * 24 23 22 44 44 H 1.09003 * 110.59375 * 140.78764 * 24 23 22 45 45 H 1.08990 * 111.00179 * 206.23052 * 25 24 23 46 46 H 1.09000 * 110.99948 * 82.37841 * 25 24 23 47 47 H 1.08993 * 110.37216 * 274.67425 * 26 22 20 48 48 H 1.09003 * 110.36430 * 36.89187 * 26 22 20 49 49 H 1.08998 * 109.62923 * 291.48173 * 27 17 16 50 50 H 1.09001 * 109.62988 * 170.89738 * 27 17 16 51 51 H 1.09000 * 109.49452 * 307.21070 * 28 14 13 52 52 H 1.09001 * 109.49531 * 67.29375 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3756 7 6 1.9931 -0.4016 3.7284 8 7 2.6720 -1.5212 3.8515 9 14 1.4994 0.5636 5.2496 10 1 2.5679 1.5386 5.5855 11 1 0.2317 1.2901 4.9851 12 1 1.3063 -0.3708 6.3875 13 6 2.0400 -0.7213 -1.2492 14 7 1.6342 0.0268 -2.4465 15 6 1.6624 -0.8317 -3.6382 16 6 1.0633 -0.0709 -4.8260 17 7 1.7718 1.2103 -4.9655 18 6 2.2865 1.5906 -6.1517 19 8 2.8415 2.6648 -6.2559 20 6 2.1736 0.6896 -7.3386 21 8 1.5180 -0.3291 -7.2669 22 7 2.7999 1.0082 -8.4887 23 6 3.6176 2.2090 -8.7147 24 6 4.1071 2.1614 -10.1773 25 6 3.0680 1.2326 -10.8594 26 6 2.7737 0.2136 -9.7301 27 6 1.9042 2.0655 -3.7762 28 6 2.4703 1.2207 -2.6298 29 1 -0.3633 0.4341 -0.9315 30 1 -0.3634 -1.0237 0.0898 31 1 -0.3633 0.5897 0.8416 32 1 3.1262 -0.7995 1.2056 33 1 1.6053 -1.7198 1.2952 34 1 2.9286 -2.0222 3.0615 35 1 3.1275 -0.7864 -1.2126 36 1 1.6170 -1.7252 -1.2873 37 1 2.6928 -1.1061 -3.8646 38 1 1.0783 -1.7327 -3.4515 39 1 0.0043 0.1139 -4.6457 40 1 1.1857 -0.6580 -5.7362 41 1 3.0160 3.1033 -8.5521 42 1 4.4732 2.2074 -8.0392 43 1 5.1072 1.7323 -10.2394 44 1 4.0851 3.1565 -10.6216 45 1 3.4985 0.7375 -11.7297 46 1 2.1689 1.7856 -11.1312 47 1 3.5443 -0.5568 -9.7038 48 1 1.7916 -0.2378 -9.8709 49 1 0.9261 2.4557 -3.4951 50 1 2.5826 2.8909 -3.9923 51 1 2.4720 1.8080 -1.7116 52 1 3.4894 0.9177 -2.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602444315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:02 Heat of formation + Delta-G solvation = -49.375201 kcal Electronic energy + Delta-G solvation = -29960.355211 eV Core-core repulsion = 25960.282023 eV Total energy + Delta-G solvation = -4000.073187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31316 -39.56099 -38.23042 -37.99735 -35.87222 -33.91969 -32.20247 -31.95571 -31.29004 -29.58811 -28.29365 -26.41423 -25.87958 -24.51858 -24.03820 -22.79691 -22.28960 -21.69672 -20.65957 -19.46498 -19.08082 -17.61290 -17.42070 -17.03081 -16.66378 -16.17310 -15.88757 -15.24593 -14.93416 -14.70956 -14.63189 -14.33851 -14.08855 -13.92932 -13.75028 -13.70915 -13.45889 -13.33567 -12.94421 -12.91065 -12.59203 -12.04719 -11.93383 -11.84140 -11.79034 -11.68035 -11.32993 -11.29887 -11.27229 -11.13654 -11.02290 -10.87216 -10.61569 -10.30590 -10.08762 -9.75250 -9.44298 -9.35794 -9.22990 -8.96589 -8.45245 -8.27503 -8.11650 -6.30510 -3.98405 1.11465 1.89968 2.88730 3.02080 3.45941 3.49784 3.65337 3.75703 4.01242 4.06529 4.13925 4.37913 4.58683 4.76739 4.81667 4.83426 4.92689 5.08226 5.11831 5.19572 5.21477 5.28335 5.31022 5.36611 5.42363 5.45866 5.47654 5.54940 5.61943 5.67327 5.73387 5.80022 5.82502 5.89412 6.04131 6.06409 6.15932 6.29268 6.42920 6.62287 6.71284 6.88311 6.99654 7.06121 7.12525 7.23533 7.29153 7.35404 7.44737 7.61967 7.68977 8.29403 8.53067 8.94852 9.72947 11.09875 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032844 B = 0.001935 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.302995 B =14463.430834 C =14750.949185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 H 0.056 0.944 4 C 0.013 3.987 5 C -0.592 4.592 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.060 3.940 14 N -0.535 5.535 15 C 0.042 3.958 16 C 0.059 3.941 17 N -0.575 5.575 18 C 0.507 3.493 19 O -0.525 6.525 20 C 0.525 3.475 21 O -0.511 6.511 22 N -0.590 5.590 23 C 0.104 3.896 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.102 3.898 27 C 0.114 3.886 28 C 0.042 3.958 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.002 0.998 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 5.807 -31.358 31.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.630 4.630 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.087 4.087 16 C -0.062 4.062 17 N -0.308 5.308 18 C 0.289 3.711 19 O -0.402 6.402 20 C 0.309 3.691 21 O -0.389 6.389 22 N -0.324 5.324 23 C -0.018 4.018 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.020 4.020 27 C -0.008 4.008 28 C -0.087 4.087 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.169 0.831 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.114 0.886 51 H 0.114 0.886 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.438 5.987 -29.569 30.173 hybrid contribution 0.801 -0.323 -1.552 1.776 sum 1.239 5.665 -31.121 31.657 Atomic orbital electron populations 1.21553 0.95520 1.00596 1.00129 1.21041 0.96114 0.98897 0.92942 0.92586 1.19268 0.95067 0.95619 0.92457 1.22051 1.38522 1.10234 0.92214 0.93179 1.25827 0.94792 0.97158 1.01399 1.70752 1.36401 1.14719 1.33474 0.83530 0.75964 0.75232 0.75409 1.21596 1.21497 1.21099 1.22346 0.97584 0.97146 0.89627 1.62011 1.53560 1.07424 1.02931 1.22501 0.99570 0.96337 0.90267 1.23370 0.96277 0.83938 1.02613 1.48090 1.53151 1.21504 1.08032 1.19813 0.80323 0.86761 0.84178 1.90737 1.42959 1.22632 1.83863 1.19978 0.79745 0.85910 0.83445 1.90364 1.40887 1.26764 1.80871 1.48330 1.48626 1.24518 1.10966 1.22241 0.95307 0.87590 0.96646 1.22742 0.99321 1.01138 0.94202 1.22815 0.99909 0.97177 0.97307 1.22408 1.03120 0.94322 0.82167 1.21929 1.02820 0.93171 0.82872 1.22492 0.94322 0.93148 0.98726 0.93594 0.94329 0.92916 0.97983 0.97541 0.92192 0.95182 0.91328 0.95022 0.89412 0.90549 0.83089 0.89877 0.90452 0.90316 0.89591 0.89355 0.90296 0.90655 0.89729 0.89927 0.88639 0.88605 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.86 37.16 0.33 -2.03 16 2 C -0.07 -1.45 2.39 -90.62 -0.22 -1.67 16 3 H 0.06 1.17 6.73 -51.93 -0.35 0.82 16 4 C 0.01 0.34 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -16.82 8.47 -34.44 -0.29 -17.11 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.43 13.65 55.43 0.76 -27.67 16 9 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.06 1.03 4.41 -3.83 -0.02 1.02 16 14 N -0.53 -7.85 3.89 -234.32 -0.91 -8.76 16 15 C 0.04 0.54 5.59 -3.70 -0.02 0.52 16 16 C 0.06 0.71 6.36 -3.60 -0.02 0.68 16 17 N -0.57 -7.19 3.01 -172.97 -0.52 -7.71 16 18 C 0.51 6.40 7.73 -11.59 -0.09 6.31 16 19 O -0.52 -7.17 13.63 5.49 0.07 -7.10 16 20 C 0.52 6.07 7.83 -11.59 -0.09 5.97 16 21 O -0.51 -6.50 13.29 5.49 0.07 -6.42 16 22 N -0.59 -5.37 3.33 -171.03 -0.57 -5.93 16 23 C 0.10 0.78 5.50 -3.07 -0.02 0.76 16 24 C -0.14 -0.58 6.95 -24.90 -0.17 -0.76 16 25 C -0.13 -0.53 7.08 -24.57 -0.17 -0.70 16 26 C 0.10 0.65 6.91 -2.52 -0.02 0.63 16 27 C 0.11 1.40 6.59 -3.60 -0.02 1.38 16 28 C 0.04 0.57 5.44 -3.70 -0.02 0.55 16 29 H 0.05 0.80 7.59 -51.93 -0.39 0.41 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 1.11 7.10 -51.93 -0.37 0.74 16 32 H 0.00 0.05 8.01 -51.93 -0.42 -0.36 16 33 H 0.01 0.17 8.00 -51.93 -0.42 -0.25 16 34 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 35 H 0.03 0.53 7.99 -51.93 -0.42 0.12 16 36 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 1.06 7.89 -51.93 -0.41 0.65 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.15 1.85 3.91 -56.55 -0.22 1.63 16 41 H 0.08 0.69 7.46 -51.93 -0.39 0.30 16 42 H 0.08 0.64 7.83 -51.93 -0.41 0.23 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 49 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.10 1.15 7.07 -51.93 -0.37 0.78 16 51 H 0.10 1.36 6.65 -51.93 -0.35 1.02 16 52 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -32.77 399.09 -10.22 -42.99 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -9.01 Total: -2.06 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.05 Total: -3.98 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -1.24 Total: -50.08 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.15 Total: -13.52 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.77 -10.22 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602444315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.387 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds