Wall clock time and date at job start Tue Mar 31 2020 20:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47758 * 2 1 4 4 C 1.53004 * 109.47075 * 119.99713 * 2 1 3 5 5 C 1.50698 * 109.47000 * 295.00382 * 4 2 1 6 6 H 1.08000 * 120.00252 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99935 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99889 * 359.72180 * 7 5 4 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46987 * 269.72201 * 9 7 5 11 11 H 1.48493 * 109.47411 * 29.72330 * 9 7 5 12 12 H 1.48500 * 109.46893 * 149.72258 * 9 7 5 13 13 C 1.52997 * 109.47312 * 239.99696 * 2 1 3 14 14 N 1.46897 * 109.47008 * 64.16379 * 13 2 1 15 15 C 1.46900 * 111.00004 * 200.43117 * 14 13 2 16 16 C 1.53244 * 109.33835 * 172.75078 * 15 14 13 17 17 N 1.47073 * 108.52193 * 53.83205 * 16 15 14 18 18 C 1.34778 * 120.88021 * 128.79643 * 17 16 15 19 19 O 1.21358 * 119.99447 * 178.32859 * 18 17 16 20 20 C 1.49448 * 120.00394 * 358.32617 * 18 17 16 21 21 O 1.21352 * 119.99758 * 6.51039 * 20 18 17 22 22 N 1.34771 * 120.00407 * 186.51369 * 20 18 17 23 23 C 1.47024 * 125.64658 * 359.68999 * 22 20 18 24 24 C 1.54307 * 107.27717 * 180.96935 * 23 22 20 25 25 C 1.55163 * 102.86509 * 22.52604 * 24 23 22 26 26 C 1.47422 * 125.65236 * 179.97438 * 22 20 18 27 27 C 1.47079 * 118.23717 * 308.81018 * 17 16 15 28 28 C 1.46902 * 110.99907 * 76.13199 * 14 13 2 29 29 H 1.09003 * 109.46817 * 65.01227 * 1 2 3 30 30 H 1.08997 * 109.47436 * 185.01338 * 1 2 3 31 31 H 1.09000 * 109.47180 * 305.02079 * 1 2 3 32 32 H 1.08990 * 109.47173 * 174.99572 * 4 2 1 33 33 H 1.09001 * 109.46698 * 55.00021 * 4 2 1 34 34 H 0.97008 * 120.00032 * 0.27019 * 8 7 5 35 35 H 1.09002 * 109.47438 * 184.16787 * 13 2 1 36 36 H 1.09007 * 109.47233 * 304.16886 * 13 2 1 37 37 H 1.08999 * 109.49485 * 292.70601 * 15 14 13 38 38 H 1.08994 * 109.49561 * 52.78955 * 15 14 13 39 39 H 1.09001 * 109.62519 * 294.11406 * 16 15 14 40 40 H 1.09004 * 109.62606 * 173.54173 * 16 15 14 41 41 H 1.09002 * 109.88348 * 300.51748 * 23 22 20 42 42 H 1.09005 * 109.88246 * 61.67511 * 23 22 20 43 43 H 1.09002 * 110.92779 * 264.11376 * 24 23 22 44 44 H 1.09003 * 110.59375 * 140.78764 * 24 23 22 45 45 H 1.08990 * 111.00179 * 206.23052 * 25 24 23 46 46 H 1.09000 * 110.99948 * 82.37841 * 25 24 23 47 47 H 1.08993 * 110.37216 * 274.67425 * 26 22 20 48 48 H 1.09003 * 110.36430 * 36.89187 * 26 22 20 49 49 H 1.08998 * 109.62923 * 291.48173 * 27 17 16 50 50 H 1.09001 * 109.62988 * 170.89738 * 27 17 16 51 51 H 1.09000 * 109.49452 * 307.21070 * 28 14 13 52 52 H 1.09001 * 109.49531 * 67.29375 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0805 0.9746 2.3756 7 6 1.9931 -0.4016 3.7284 8 7 2.6720 -1.5212 3.8515 9 14 1.4994 0.5636 5.2496 10 1 2.5679 1.5386 5.5855 11 1 0.2317 1.2901 4.9851 12 1 1.3063 -0.3708 6.3875 13 6 2.0400 -0.7213 -1.2492 14 7 1.6342 0.0268 -2.4465 15 6 1.6624 -0.8317 -3.6382 16 6 1.0633 -0.0709 -4.8260 17 7 1.7718 1.2103 -4.9655 18 6 2.2865 1.5906 -6.1517 19 8 2.8415 2.6648 -6.2559 20 6 2.1736 0.6896 -7.3386 21 8 1.5180 -0.3291 -7.2669 22 7 2.7999 1.0082 -8.4887 23 6 3.6176 2.2090 -8.7147 24 6 4.1071 2.1614 -10.1773 25 6 3.0680 1.2326 -10.8594 26 6 2.7737 0.2136 -9.7301 27 6 1.9042 2.0655 -3.7762 28 6 2.4703 1.2207 -2.6298 29 1 -0.3633 0.4341 -0.9315 30 1 -0.3634 -1.0237 0.0898 31 1 -0.3633 0.5897 0.8416 32 1 3.1262 -0.7995 1.2056 33 1 1.6053 -1.7198 1.2952 34 1 2.9286 -2.0222 3.0615 35 1 3.1275 -0.7864 -1.2126 36 1 1.6170 -1.7252 -1.2873 37 1 2.6928 -1.1061 -3.8646 38 1 1.0783 -1.7327 -3.4515 39 1 0.0043 0.1139 -4.6457 40 1 1.1857 -0.6580 -5.7362 41 1 3.0160 3.1033 -8.5521 42 1 4.4732 2.2074 -8.0392 43 1 5.1072 1.7323 -10.2394 44 1 4.0851 3.1565 -10.6216 45 1 3.4985 0.7375 -11.7297 46 1 2.1689 1.7856 -11.1312 47 1 3.5443 -0.5568 -9.7038 48 1 1.7916 -0.2378 -9.8709 49 1 0.9261 2.4557 -3.4951 50 1 2.5826 2.8909 -3.9923 51 1 2.4720 1.8080 -1.7116 52 1 3.4894 0.9177 -2.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602444315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:01 Heat of formation + Delta-G solvation = -69.979555 kcal Electronic energy + Delta-G solvation = -29961.248683 eV Core-core repulsion = 25960.282023 eV Total energy + Delta-G solvation = -4000.966659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.21049 -40.46678 -39.35122 -38.75736 -37.34050 -35.50489 -33.83498 -32.79022 -32.32946 -30.10443 -29.56984 -28.31695 -26.94889 -25.92718 -24.99964 -24.42363 -23.34617 -22.22472 -21.57892 -20.81522 -20.29662 -18.91077 -18.42214 -18.26063 -17.77249 -17.09288 -16.67029 -16.50056 -16.15192 -15.95539 -15.79958 -15.60691 -15.29949 -15.21531 -15.00659 -14.62773 -14.38307 -14.16523 -14.07181 -13.74998 -13.72056 -13.51542 -13.42535 -13.02884 -12.96210 -12.84626 -12.48344 -12.40050 -12.33332 -12.25137 -12.18687 -12.00267 -11.94254 -11.80580 -11.61795 -11.46480 -11.28099 -10.62030 -10.51730 -10.26601 -10.10686 -9.86230 -9.34797 -8.64794 -6.33618 0.18875 1.07106 1.52136 1.61418 1.78837 1.95466 2.17748 2.57406 2.82471 2.94063 3.19125 3.60376 3.66770 3.77341 3.83986 3.89655 4.02977 4.12530 4.15007 4.26611 4.29264 4.38902 4.41876 4.42190 4.43311 4.60497 4.63119 4.72290 4.74375 4.76034 4.79070 4.85453 4.88359 4.92043 4.95398 5.01540 5.07433 5.08891 5.11574 5.23756 5.33159 5.33603 5.38829 5.48563 5.64367 5.81795 5.96885 6.02411 6.07946 6.12694 6.23723 6.46106 6.63255 6.76668 7.46998 8.75752 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032844 B = 0.001935 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.302995 B =14463.430834 C =14750.949185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.063 4.063 3 H 0.052 0.948 4 C 0.016 3.984 5 C -0.602 4.602 6 H 0.052 0.948 7 C -0.044 4.044 8 N -0.942 5.942 9 Si 1.118 2.882 10 H -0.274 1.274 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.073 3.927 14 N -0.534 5.534 15 C 0.044 3.956 16 C 0.068 3.932 17 N -0.579 5.579 18 C 0.504 3.496 19 O -0.539 6.539 20 C 0.519 3.481 21 O -0.528 6.528 22 N -0.588 5.588 23 C 0.099 3.901 24 C -0.127 4.127 25 C -0.124 4.124 26 C 0.093 3.907 27 C 0.121 3.879 28 C 0.044 3.956 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.034 0.966 32 H -0.020 1.020 33 H -0.013 1.013 34 H 0.254 0.746 35 H 0.021 0.979 36 H 0.071 0.929 37 H 0.028 0.972 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.155 0.845 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.090 0.910 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 6.870 -33.333 34.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 H 0.071 0.929 4 C -0.021 4.021 5 C -0.640 4.640 6 H 0.070 0.930 7 C -0.241 4.241 8 N -0.581 5.581 9 Si 0.940 3.060 10 H -0.200 1.200 11 H -0.193 1.193 12 H -0.210 1.210 13 C -0.055 4.055 14 N -0.258 5.258 15 C -0.084 4.084 16 C -0.053 4.053 17 N -0.312 5.312 18 C 0.287 3.713 19 O -0.417 6.417 20 C 0.303 3.697 21 O -0.408 6.408 22 N -0.320 5.320 23 C -0.023 4.023 24 C -0.165 4.165 25 C -0.162 4.162 26 C -0.028 4.028 27 C -0.001 4.001 28 C -0.084 4.084 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.053 0.947 32 H -0.002 1.002 33 H 0.006 0.994 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.171 0.829 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.120 0.880 45 H 0.131 0.869 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.108 0.892 50 H 0.116 0.884 51 H 0.108 0.892 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.035 7.064 -31.603 32.383 hybrid contribution 0.996 -0.646 -1.022 1.567 sum 0.961 6.418 -32.625 33.264 Atomic orbital electron populations 1.21442 0.94430 1.00203 1.00635 1.20865 0.96842 0.98250 0.92206 0.92936 1.19202 0.93592 0.94955 0.94395 1.22445 1.37870 1.10329 0.93346 0.92975 1.27396 0.94165 0.97306 1.05230 1.70892 1.38353 1.16021 1.32794 0.82922 0.76922 0.74374 0.71825 1.19959 1.19327 1.21012 1.22050 0.96852 0.97069 0.89493 1.61956 1.53490 1.07638 1.02737 1.22558 0.99694 0.96580 0.89611 1.23327 0.96274 0.83623 1.02083 1.48177 1.53169 1.21688 1.08133 1.20089 0.79866 0.86770 0.84568 1.90724 1.43526 1.23265 1.84197 1.19791 0.80342 0.85677 0.83888 1.90341 1.41993 1.27282 1.81211 1.48520 1.47459 1.25091 1.10947 1.22355 0.94493 0.86576 0.98845 1.22747 0.99777 1.02296 0.91680 1.22827 0.99990 0.96366 0.96989 1.22676 1.03263 0.95064 0.81771 1.21851 1.03127 0.92844 0.82301 1.22478 0.94034 0.92835 0.99100 0.91088 0.94723 0.94668 1.00166 0.99444 0.93689 0.96093 0.91013 0.95420 0.88334 0.90070 0.82898 0.90916 0.91549 0.89233 0.88040 0.86924 0.90138 0.89823 0.90173 0.89215 0.88400 0.89202 0.95329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.86 71.98 0.64 -3.57 16 2 C -0.06 -2.57 2.39 -10.79 -0.03 -2.59 16 3 H 0.05 2.19 6.73 -2.39 -0.02 2.17 16 4 C 0.02 0.84 3.76 29.85 0.11 0.95 16 5 C -0.60 -34.57 8.47 25.60 0.22 -34.36 16 6 H 0.05 2.92 7.06 -2.91 -0.02 2.90 16 7 C -0.04 -2.62 5.46 84.66 0.46 -2.15 16 8 N -0.94 -59.61 13.65 21.45 0.29 -59.32 16 9 Si 1.12 51.32 29.90 68.60 2.05 53.37 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.07 2.49 4.41 86.30 0.38 2.88 16 14 N -0.53 -15.12 3.89 -895.24 -3.48 -18.60 16 15 C 0.04 1.08 5.59 86.38 0.48 1.56 16 16 C 0.07 1.54 6.36 86.35 0.55 2.09 16 17 N -0.58 -13.99 3.01 -819.50 -2.47 -16.46 16 18 C 0.50 12.48 7.73 87.27 0.67 13.15 16 19 O -0.54 -14.57 13.63 -3.27 -0.04 -14.61 16 20 C 0.52 11.72 7.83 87.27 0.68 12.40 16 21 O -0.53 -13.10 13.29 -3.25 -0.04 -13.14 16 22 N -0.59 -10.13 3.33 -813.36 -2.71 -12.84 16 23 C 0.10 1.38 5.50 86.72 0.48 1.86 16 24 C -0.13 -0.78 6.95 31.78 0.22 -0.56 16 25 C -0.12 -0.64 7.08 32.00 0.23 -0.41 16 26 C 0.09 1.03 6.91 86.86 0.60 1.63 16 27 C 0.12 2.85 6.59 86.35 0.57 3.42 16 28 C 0.04 1.18 5.44 86.38 0.47 1.65 16 29 H 0.07 2.35 7.59 -2.39 -0.02 2.34 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.03 1.44 7.10 -2.39 -0.02 1.43 16 32 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 33 H -0.01 -0.71 8.00 -2.39 -0.02 -0.73 16 34 H 0.25 16.27 7.22 -92.70 -0.67 15.60 16 35 H 0.02 0.75 7.99 -2.39 -0.02 0.73 16 36 H 0.07 2.41 7.76 -2.38 -0.02 2.39 16 37 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 2.22 7.89 -2.39 -0.02 2.20 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.15 3.60 3.91 -75.60 -0.30 3.30 16 41 H 0.07 1.17 7.46 -2.39 -0.02 1.15 16 42 H 0.07 1.07 7.83 -2.38 -0.02 1.05 16 43 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.08 0.98 8.03 -2.39 -0.02 0.96 16 49 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.10 2.28 7.07 -2.39 -0.02 2.27 16 51 H 0.09 2.52 6.65 -2.39 -0.02 2.50 16 52 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -71.09 399.09 1.05 -70.04 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.71 Total: 13.61 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 6.74 Total: -2.04 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -8.36 Total: -107.22 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.09 Total: -27.76 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -71.09 1.05 -70.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602444315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.058 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds