Wall clock time and date at job start Tue Mar 31 2020 20:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47568 * 2 1 4 4 C 1.53000 * 109.46911 * 239.99895 * 2 1 3 5 5 C 1.50707 * 109.47151 * 65.00152 * 4 2 1 6 6 H 1.08000 * 119.99363 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00264 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99918 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47049 * 59.99875 * 9 7 5 11 11 H 1.48492 * 109.47265 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47199 * 300.00307 * 9 7 5 13 13 C 1.53002 * 109.47004 * 120.00369 * 2 1 3 14 14 N 1.46898 * 109.46922 * 185.13589 * 13 2 1 15 15 C 1.46896 * 111.00118 * 71.25722 * 14 13 2 16 16 C 1.53244 * 109.33937 * 187.25203 * 15 14 13 17 17 N 1.47075 * 108.51920 * 306.16644 * 16 15 14 18 18 C 1.34774 * 120.87988 * 231.16356 * 17 16 15 19 19 O 1.21352 * 120.00231 * 357.03326 * 18 17 16 20 20 C 1.49456 * 120.00017 * 177.04220 * 18 17 16 21 21 O 1.21354 * 119.99511 * 6.07542 * 20 18 17 22 22 N 1.34770 * 120.00123 * 186.08513 * 20 18 17 23 23 C 1.47022 * 125.64744 * 359.68099 * 22 20 18 24 24 C 1.54316 * 107.27466 * 180.96946 * 23 22 20 25 25 C 1.55163 * 102.86398 * 22.53190 * 24 23 22 26 26 C 1.47428 * 125.64849 * 179.97438 * 22 20 18 27 27 C 1.47084 * 118.23826 * 51.19208 * 17 16 15 28 28 C 1.46903 * 110.99865 * 195.55700 * 14 13 2 29 29 H 1.09003 * 109.46941 * 294.97613 * 1 2 3 30 30 H 1.09000 * 109.47247 * 54.97274 * 1 2 3 31 31 H 1.08991 * 109.47814 * 174.97433 * 1 2 3 32 32 H 1.08999 * 109.47167 * 184.99847 * 4 2 1 33 33 H 1.09002 * 109.47360 * 305.00313 * 4 2 1 34 34 H 0.96997 * 120.00088 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47402 * 65.13265 * 13 2 1 36 36 H 1.08998 * 109.47135 * 305.13399 * 13 2 1 37 37 H 1.08994 * 109.49529 * 67.29323 * 15 14 13 38 38 H 1.08998 * 109.49293 * 307.20845 * 15 14 13 39 39 H 1.09001 * 109.62383 * 186.45755 * 16 15 14 40 40 H 1.08996 * 109.62668 * 65.88207 * 16 15 14 41 41 H 1.08995 * 109.88492 * 300.51858 * 23 22 20 42 42 H 1.09005 * 109.88307 * 61.68532 * 23 22 20 43 43 H 1.08998 * 110.92784 * 264.11132 * 24 23 22 44 44 H 1.09000 * 110.59036 * 140.78776 * 24 23 22 45 45 H 1.08991 * 111.00297 * 206.22619 * 25 24 23 46 46 H 1.09003 * 111.00203 * 82.37254 * 25 24 23 47 47 H 1.09008 * 110.36004 * 274.66656 * 26 22 20 48 48 H 1.08995 * 110.36674 * 36.87944 * 26 22 20 49 49 H 1.08996 * 109.62859 * 68.51402 * 27 17 16 50 50 H 1.08993 * 109.62945 * 189.10447 * 27 17 16 51 51 H 1.09001 * 109.48865 * 52.78863 * 28 14 13 52 52 H 1.08995 * 109.49192 * 292.70868 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9931 -0.4017 -3.7284 8 7 2.6771 -1.5182 -3.8512 9 14 1.4996 0.5634 -5.2496 10 1 2.0918 1.9239 -5.1865 11 1 1.9944 -0.1366 -6.4621 12 1 0.0196 0.6702 -5.3095 13 6 2.0400 -0.7213 1.2492 14 7 3.5037 -0.6149 1.3128 15 6 3.9181 0.7556 1.6411 16 6 5.4417 0.8679 1.5202 17 7 6.0545 -0.1822 2.3477 18 6 7.0164 0.1162 3.2433 19 8 7.4258 1.2547 3.3374 20 6 7.5791 -0.9551 4.1205 21 8 7.2512 -2.1113 3.9524 22 7 8.4504 -0.6370 5.0983 23 6 8.9360 0.7161 5.4064 24 6 9.9294 0.5901 6.5805 25 6 10.3837 -0.8909 6.4912 26 6 9.0791 -1.5890 6.0321 27 6 5.5903 -1.5667 2.1715 28 6 4.0610 -1.5830 2.2668 29 1 -0.3633 0.4339 0.9316 30 1 -0.3634 0.5898 -0.8415 31 1 -0.3634 -1.0236 -0.0900 32 1 3.1262 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 2.9243 -1.8411 -4.7318 35 1 1.7537 -1.7721 1.2044 36 1 1.6035 -0.2634 2.1368 37 1 3.6158 0.9926 2.6611 38 1 3.4460 1.4538 0.9499 39 1 5.7657 1.8473 1.8721 40 1 5.7372 0.7334 0.4797 41 1 9.4393 1.1365 4.5359 42 1 8.1002 1.3526 5.6973 43 1 9.4345 0.7850 7.5319 44 1 10.7760 1.2622 6.4402 45 1 10.7027 -1.2610 7.4654 46 1 11.1741 -1.0131 5.7506 47 1 8.4255 -1.7711 6.8853 48 1 9.3069 -2.5254 5.5229 49 1 5.9002 -1.9351 1.1937 50 1 6.0126 -2.1969 2.9542 51 1 3.6924 -2.5810 2.0294 52 1 3.7566 -1.3135 3.2781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602444316.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:05 Heat of formation + Delta-G solvation = -42.454060 kcal Electronic energy + Delta-G solvation = -30279.560724 eV Core-core repulsion = 26279.787660 eV Total energy + Delta-G solvation = -3999.773064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16975 -39.41293 -38.07297 -37.88254 -35.68722 -33.58252 -32.09541 -31.89758 -31.08468 -29.49641 -28.20275 -26.87815 -25.73352 -24.23213 -23.87796 -22.66223 -22.29393 -21.61823 -20.53230 -19.32585 -18.76207 -17.47358 -17.27783 -16.86047 -16.29172 -16.02796 -15.74375 -15.08228 -14.76853 -14.73392 -14.38893 -14.30698 -14.19258 -13.95744 -13.74499 -13.52592 -13.32679 -12.96842 -12.80592 -12.63146 -12.34996 -12.06450 -11.86169 -11.73198 -11.69890 -11.57748 -11.30994 -11.21273 -11.12431 -10.99998 -10.88057 -10.81385 -10.68033 -10.33992 -10.16508 -9.62682 -9.23269 -9.12781 -9.05918 -8.86478 -8.72200 -8.22551 -7.84293 -5.87010 -3.87553 1.25672 2.04013 3.03392 3.17607 3.38803 3.43572 3.45569 3.89076 4.13060 4.21704 4.24279 4.45716 4.55014 4.85089 4.90055 5.03638 5.13134 5.20146 5.25569 5.28761 5.38643 5.39823 5.44777 5.47911 5.48768 5.51132 5.62353 5.68053 5.75013 5.78021 5.87295 5.94084 5.98704 6.07704 6.08881 6.24013 6.28985 6.32722 6.39782 6.51789 6.84094 6.98268 7.02936 7.18332 7.29830 7.42090 7.50081 7.52009 7.84581 7.86412 8.08099 8.21960 8.58496 9.20137 9.74548 11.23999 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021117 B = 0.002279 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.599503 B =12284.058214 C =12586.189030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.065 3.935 14 N -0.526 5.526 15 C 0.045 3.955 16 C 0.112 3.888 17 N -0.572 5.572 18 C 0.506 3.494 19 O -0.528 6.528 20 C 0.525 3.475 21 O -0.510 6.510 22 N -0.592 5.592 23 C 0.105 3.895 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.102 3.898 27 C 0.056 3.944 28 C 0.045 3.955 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.009 0.991 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.018 0.982 37 H 0.029 0.971 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.153 0.847 51 H 0.088 0.912 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.424 1.779 23.550 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.552 4.552 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.062 4.062 14 N -0.251 5.251 15 C -0.083 4.083 16 C -0.009 4.009 17 N -0.305 5.305 18 C 0.288 3.712 19 O -0.405 6.405 20 C 0.310 3.690 21 O -0.387 6.387 22 N -0.326 5.326 23 C -0.017 4.017 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.020 4.020 27 C -0.065 4.065 28 C -0.083 4.083 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.047 0.953 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.170 0.830 51 H 0.106 0.894 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 13.665 1.525 22.844 26.663 hybrid contribution -0.751 0.700 -0.325 1.077 sum 12.914 2.225 22.519 26.054 Atomic orbital electron populations 1.21693 0.96423 1.01234 0.99604 1.21243 0.94219 0.99189 0.95653 0.92653 1.19038 0.97380 0.94448 0.89167 1.21276 1.34390 1.08147 0.91402 0.93099 1.24985 0.95499 0.95088 0.98848 1.69961 1.39067 1.21210 1.23186 0.86779 0.78747 0.80210 0.82928 1.20424 1.21472 1.20484 1.22268 0.85387 1.01097 0.97436 1.61871 1.11034 1.03776 1.48379 1.22461 0.94493 0.91977 0.99397 1.21955 0.92311 0.91025 0.95645 1.48110 1.35626 1.10823 1.35893 1.19777 0.81395 0.88277 0.81727 1.90724 1.59392 1.21204 1.69213 1.20038 0.79479 0.88924 0.80603 1.90351 1.57946 1.21023 1.69424 1.48328 1.42515 1.10396 1.31325 1.22227 0.98004 0.82946 0.98540 1.22741 0.99175 0.97059 0.98419 1.22813 0.96673 0.95239 1.02493 1.22396 0.93694 0.93370 0.92540 1.23424 0.94418 0.81950 1.06737 1.22461 0.94632 0.97643 0.93594 0.95393 0.92005 0.93497 0.94911 0.97305 0.93222 0.91212 0.96361 0.95301 0.88487 0.88820 0.89438 0.89885 0.90496 0.90391 0.89644 0.89429 0.90288 0.90748 0.89738 0.90192 0.83046 0.89400 0.95426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.92 37.16 0.33 -2.13 16 2 C -0.08 -1.70 2.35 -90.62 -0.21 -1.91 16 3 H 0.06 1.13 6.44 -51.93 -0.33 0.79 16 4 C 0.04 0.94 4.39 -27.88 -0.12 0.81 16 5 C -0.51 -14.41 8.47 -34.44 -0.29 -14.70 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.07 1.12 4.36 -3.82 -0.02 1.11 16 14 N -0.53 -8.79 3.97 -234.32 -0.93 -9.72 16 15 C 0.05 0.69 5.47 -3.70 -0.02 0.67 16 16 C 0.11 1.64 6.59 -3.60 -0.02 1.61 16 17 N -0.57 -8.26 3.01 -172.97 -0.52 -8.78 16 18 C 0.51 7.13 7.72 -11.58 -0.09 7.04 16 19 O -0.53 -7.90 13.63 5.50 0.07 -7.83 16 20 C 0.52 6.72 7.84 -11.59 -0.09 6.63 16 21 O -0.51 -7.16 13.28 5.49 0.07 -7.09 16 22 N -0.59 -5.95 3.33 -171.01 -0.57 -6.52 16 23 C 0.11 0.87 5.49 -3.07 -0.02 0.86 16 24 C -0.14 -0.68 6.95 -24.90 -0.17 -0.85 16 25 C -0.13 -0.63 7.08 -24.57 -0.17 -0.80 16 26 C 0.10 0.73 6.91 -2.52 -0.02 0.72 16 27 C 0.06 0.79 6.39 -3.60 -0.02 0.77 16 28 C 0.05 0.66 5.60 -3.70 -0.02 0.64 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 1.23 7.10 -51.93 -0.37 0.86 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.91 7.62 -51.93 -0.40 0.51 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.21 7.86 -51.93 -0.41 0.80 16 36 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.52 6.35 -51.93 -0.33 1.19 16 39 H 0.09 1.29 7.08 -51.93 -0.37 0.92 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 0.77 7.46 -51.93 -0.39 0.39 16 42 H 0.08 0.69 7.82 -51.93 -0.41 0.28 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 48 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 49 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.15 2.13 3.86 -56.72 -0.22 1.91 16 51 H 0.09 1.23 7.93 -51.93 -0.41 0.82 16 52 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.05 15.07 6.03 6.03 Total: -1.00 -32.41 400.05 -10.23 -42.63 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -9.04 Total: -1.17 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.06 Total: 1.99 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -1.28 Total: -51.49 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.15 Total: -14.91 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.41 -10.23 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602444316.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.180 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds