Wall clock time and date at job start Tue Mar 31 2020 20:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47422 * 2 1 4 4 C 1.52996 * 109.47184 * 239.99464 * 2 1 3 5 5 C 1.50704 * 109.46784 * 64.99948 * 4 2 1 6 6 H 1.07999 * 120.00321 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99733 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00207 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99995 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47142 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47329 * 119.99959 * 9 7 5 12 12 H 1.48499 * 109.47079 * 240.00202 * 9 7 5 13 13 C 1.53005 * 109.46923 * 119.99916 * 2 1 3 14 14 N 1.46903 * 109.46691 * 294.99821 * 13 2 1 15 15 C 1.46902 * 110.99887 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47473 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47495 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.47577 * 180.02562 * 17 16 15 19 19 C 1.34009 * 124.22468 * 89.97296 * 18 17 16 20 20 O 1.21541 * 123.81505 * 359.94235 * 19 18 17 21 21 N 1.34980 * 112.36947 * 179.97438 * 19 18 17 22 22 C 1.45939 * 105.99523 * 0.02562 * 21 19 18 23 23 C 1.53571 * 112.01135 * 238.41429 * 22 21 19 24 24 C 1.54499 * 104.08611 * 275.02034 * 23 22 21 25 25 C 1.53977 * 106.66178 * 337.67240 * 24 23 22 26 26 C 1.53571 * 112.01079 * 121.58181 * 22 21 19 27 27 C 1.35208 * 124.22026 * 269.95733 * 18 17 16 28 28 O 1.21235 * 127.46858 * 0.03162 * 27 18 17 29 29 H 1.08998 * 109.47167 * 300.00750 * 1 2 3 30 30 H 1.09005 * 109.47153 * 59.99814 * 1 2 3 31 31 H 1.08994 * 109.47664 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47626 * 185.00003 * 4 2 1 33 33 H 1.08996 * 109.47243 * 305.00795 * 4 2 1 34 34 H 0.97004 * 120.00379 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47194 * 174.99957 * 13 2 1 36 36 H 1.08994 * 109.47384 * 54.99491 * 13 2 1 37 37 H 1.00896 * 111.00313 * 303.95337 * 14 13 2 38 38 H 1.09000 * 109.47010 * 59.99417 * 15 14 13 39 39 H 1.09000 * 109.46840 * 300.00073 * 15 14 13 40 40 H 1.09008 * 109.47108 * 60.00103 * 16 15 14 41 41 H 1.09000 * 109.47341 * 300.00004 * 16 15 14 42 42 H 1.09000 * 109.46886 * 59.99718 * 17 16 15 43 43 H 1.09000 * 109.46943 * 300.00387 * 17 16 15 44 44 H 0.97002 * 127.00288 * 180.02562 * 21 19 18 45 45 H 1.08999 * 110.50635 * 156.36822 * 23 22 21 46 46 H 1.08999 * 110.50963 * 33.67130 * 23 22 21 47 47 H 1.08999 * 110.02012 * 218.37913 * 24 23 22 48 48 H 1.08993 * 110.02517 * 96.97182 * 24 23 22 49 49 H 1.08997 * 110.01708 * 119.30557 * 25 24 23 50 50 H 1.09001 * 110.01783 * 240.70100 * 25 24 23 51 51 H 1.09000 * 110.51149 * 326.32653 * 26 22 21 52 52 H 1.09003 * 110.50881 * 203.63378 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4765 6 1 1.0806 0.9744 -2.3757 7 6 1.9932 -0.4019 -3.7282 8 7 2.6764 -1.5190 -3.8510 9 14 1.4996 0.5630 -5.2496 10 1 0.7421 1.7740 -4.8435 11 1 2.7180 0.9679 -5.9959 12 1 0.6459 -0.2859 -6.1188 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0375 2.4456 15 6 2.1256 -0.6263 3.6672 16 6 1.7033 0.1918 4.8892 17 6 2.1968 -0.5000 6.1615 18 7 1.7919 0.2830 7.3316 19 6 0.6366 0.1134 7.9890 20 8 -0.2017 -0.7113 7.6817 21 7 0.5087 0.9623 9.0306 22 6 1.7236 1.7709 9.0418 23 6 2.4846 1.6479 10.3700 24 6 1.8070 2.6883 11.2894 25 6 1.1300 3.7184 10.3666 26 6 1.4180 3.2707 8.9162 27 6 2.5375 1.2669 7.8831 28 8 3.6264 1.6582 7.5212 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7198 -1.2951 34 1 2.9243 -1.8416 -4.7316 35 1 3.1263 -0.7995 1.2057 36 1 1.6053 -1.7197 1.2953 37 1 1.9881 0.9874 2.3967 38 1 3.2126 -0.7036 3.6401 39 1 1.6919 -1.6243 3.7301 40 1 0.6164 0.2694 4.9165 41 1 2.1374 1.1896 4.8260 42 1 3.2837 -0.5780 6.1344 43 1 1.7624 -1.4977 6.2244 44 1 -0.2384 1.0227 9.6462 45 1 3.5381 1.8904 10.2303 46 1 2.3741 0.6448 10.7819 47 1 2.5549 3.1797 11.9117 48 1 1.0601 2.2018 11.9166 49 1 0.0551 3.7311 10.5467 50 1 1.5499 4.7090 10.5417 51 1 0.5430 3.4307 8.2862 52 1 2.2804 3.8039 8.5161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602500759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:08 Heat of formation + Delta-G solvation = -72.887985 kcal Electronic energy + Delta-G solvation = -29003.219184 eV Core-core repulsion = 25002.126406 eV Total energy + Delta-G solvation = -4001.092778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.07614 -39.13222 -38.50722 -37.20749 -36.17948 -35.13327 -33.86351 -32.25116 -30.76153 -29.60910 -28.97230 -27.00348 -26.25300 -24.48527 -23.97204 -22.46412 -21.79997 -21.32974 -21.17767 -20.76616 -19.00674 -18.38587 -17.04967 -16.86469 -16.53499 -16.28627 -16.08604 -15.71267 -15.65824 -15.15788 -14.66965 -14.57960 -14.31519 -14.28774 -14.09992 -13.92222 -13.19227 -13.09292 -12.65449 -12.38854 -12.34124 -12.27947 -12.09849 -11.96609 -11.87632 -11.72213 -11.44929 -11.35881 -11.12508 -11.11971 -10.99139 -10.82269 -10.68600 -10.51207 -10.26039 -10.23528 -10.09039 -9.88392 -9.66570 -9.11272 -8.91105 -8.30546 -8.10898 -5.95102 -3.96014 1.16578 1.80466 2.60722 2.66135 3.33988 3.40579 3.41444 3.45763 3.77786 3.81141 4.30092 4.36432 4.45332 4.51238 4.59342 4.67468 4.72665 4.89535 4.90379 4.93577 5.02708 5.10046 5.16168 5.24986 5.27538 5.39848 5.40700 5.42699 5.45970 5.47472 5.61190 5.63735 5.75117 5.86984 6.01530 6.07652 6.19561 6.33807 6.45381 6.58729 6.65039 6.72766 6.96381 7.04928 7.22045 7.23236 7.38606 7.66070 7.73193 7.73305 7.88844 8.05429 8.49637 9.10624 9.67266 11.16459 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.001639 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.855051 B =17079.396893 C =17282.809272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.687 5.687 15 C 0.063 3.937 16 C -0.132 4.132 17 C 0.119 3.881 18 N -0.576 5.576 19 C 0.701 3.299 20 O -0.534 6.534 21 N -0.713 5.713 22 C 0.111 3.889 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.118 4.118 27 C 0.536 3.464 28 O -0.459 6.459 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.013 0.987 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.337 0.663 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.440 0.560 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 8.196 35.557 36.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.318 5.318 15 C -0.067 4.067 16 C -0.171 4.171 17 C -0.003 4.003 18 N -0.322 5.322 19 C 0.402 3.598 20 O -0.407 6.407 21 N -0.378 5.378 22 C 0.019 3.981 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.157 4.157 27 C 0.322 3.678 28 O -0.328 6.328 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.284 0.716 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.102 0.898 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.545 7.493 34.996 35.823 hybrid contribution 0.439 0.612 -0.754 1.065 sum -1.107 8.105 34.243 35.206 Atomic orbital electron populations 1.21587 0.95709 1.00590 1.00121 1.21205 0.96029 0.98901 0.94046 0.92863 1.19130 0.95916 0.95610 0.90454 1.21286 1.34444 1.08264 0.90990 0.92504 1.25030 0.95376 0.95118 0.99116 1.69979 1.39199 1.21275 1.23235 0.86568 0.78214 0.80132 0.83283 1.19763 1.21143 1.21092 1.22161 0.97197 0.97747 0.89354 1.60512 1.64037 1.05768 1.01480 1.21790 0.97291 0.98300 0.89344 1.21901 1.02914 0.99572 0.92724 1.21735 1.01409 0.95194 0.81924 1.46618 1.19408 1.35906 1.30293 1.16064 0.81802 0.81748 0.80171 1.91047 1.43054 1.36945 1.69637 1.45306 1.21772 1.37835 1.32892 1.21398 0.85992 0.94451 0.96254 1.22493 1.00280 1.01086 0.91745 1.22213 1.00030 0.96041 0.97791 1.22215 1.01180 0.99589 0.93113 1.22500 1.03739 0.90653 0.98778 1.20416 0.85212 0.78760 0.83395 1.90818 1.17708 1.58954 1.65286 0.93967 0.92791 0.94146 0.96914 0.96520 0.93182 0.95705 0.91475 0.84599 0.95268 0.90770 0.90203 0.91605 0.88692 0.88260 0.71558 0.88931 0.89954 0.90687 0.91179 0.91143 0.90651 0.89799 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.08 -1.73 2.48 -90.62 -0.22 -1.96 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.56 8.41 -34.44 -0.29 -14.85 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.06 1.13 5.08 -3.82 -0.02 1.11 16 14 N -0.69 -10.20 5.96 -113.78 -0.68 -10.88 16 15 C 0.06 0.76 5.68 -3.83 -0.02 0.74 16 16 C -0.13 -1.42 5.80 -26.73 -0.16 -1.57 16 17 C 0.12 1.12 5.72 -4.05 -0.02 1.09 16 18 N -0.58 -5.44 2.62 -120.93 -0.32 -5.76 16 19 C 0.70 6.90 8.64 -87.42 -0.76 6.15 16 20 O -0.53 -7.19 17.49 5.33 0.09 -7.10 16 21 N -0.71 -4.34 6.03 -53.62 -0.32 -4.66 16 22 C 0.11 0.64 1.04 -132.88 -0.14 0.50 16 23 C -0.12 -0.48 6.02 -25.65 -0.15 -0.64 16 24 C -0.12 -0.31 6.82 -25.44 -0.17 -0.48 16 25 C -0.12 -0.34 6.82 -25.44 -0.17 -0.51 16 26 C -0.12 -0.55 6.03 -25.65 -0.15 -0.70 16 27 C 0.54 4.77 7.02 -10.99 -0.08 4.70 16 28 O -0.46 -5.19 17.80 5.60 0.10 -5.09 16 29 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.34 4.77 8.73 -39.29 -0.34 4.42 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16 43 H 0.10 0.92 7.87 -51.93 -0.41 0.51 16 44 H 0.44 1.71 8.96 -40.82 -0.37 1.35 16 45 H 0.09 0.42 8.07 -51.93 -0.42 0.00 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 48 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 49 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 50 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 51 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 LS Contribution 418.45 15.07 6.31 6.31 Total: -1.00 -33.79 418.45 -10.76 -44.55 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -9.41 Total: -1.25 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.25 Total: -6.51 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.58 Total: -47.87 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.19 Total: -12.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.79 -10.76 -44.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602500759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.343 kcal (2) G-P(sol) polarization free energy of solvation -33.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds