Wall clock time and date at job start Tue Mar 31 2020 20:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47284 * 2 1 4 4 C 1.50706 * 109.46954 * 120.00190 * 2 1 3 5 5 H 1.07992 * 120.00249 * 120.00247 * 4 2 1 6 6 C 1.37877 * 119.99489 * 299.99628 * 4 2 1 7 7 N 1.31507 * 120.00522 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99680 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47074 * 89.99609 * 8 6 4 10 10 H 1.48502 * 109.47094 * 210.00132 * 8 6 4 11 11 H 1.48503 * 109.46730 * 329.99956 * 8 6 4 12 12 N 1.46904 * 109.46913 * 239.99813 * 2 1 3 13 13 C 1.46893 * 110.99770 * 69.95268 * 12 2 1 14 14 C 1.46896 * 110.99969 * 305.99605 * 12 2 1 15 15 N 1.46495 * 109.47423 * 209.29426 * 14 12 2 16 16 C 1.33786 * 124.18327 * 270.15584 * 15 14 12 17 17 O 1.21545 * 123.77056 * 0.06884 * 16 15 14 18 18 N 1.34532 * 112.45931 * 180.30337 * 16 15 14 19 19 C 1.47306 * 106.61873 * 359.74425 * 18 16 15 20 20 C 1.53002 * 110.73058 * 241.41246 * 19 18 16 21 21 C 1.52998 * 110.60014 * 118.52776 * 19 18 16 22 22 C 1.53001 * 109.47275 * 190.82817 * 21 19 18 23 23 C 1.53001 * 109.46888 * 180.02562 * 22 21 19 24 24 C 1.52999 * 109.47376 * 59.99647 * 23 22 21 25 25 C 1.53000 * 109.47361 * 299.99644 * 24 23 22 26 26 C 1.52999 * 109.46889 * 70.82525 * 21 19 18 27 27 C 1.34774 * 124.17280 * 89.99849 * 15 14 12 28 28 O 1.21229 * 127.15921 * 359.97438 * 27 15 14 29 29 H 1.09004 * 109.46948 * 305.97722 * 1 2 3 30 30 H 1.08999 * 109.47105 * 65.97704 * 1 2 3 31 31 H 1.09001 * 109.47353 * 185.97855 * 1 2 3 32 32 H 0.97002 * 120.00140 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47149 * 296.04208 * 13 12 2 34 34 H 1.08998 * 109.47464 * 56.04188 * 13 12 2 35 35 H 1.09001 * 109.47073 * 176.04603 * 13 12 2 36 36 H 1.09010 * 109.46926 * 89.29568 * 14 12 2 37 37 H 1.08999 * 109.47306 * 329.29977 * 14 12 2 38 38 H 0.96998 * 126.68908 * 179.76769 * 18 16 15 39 39 H 1.09004 * 109.47174 * 174.95262 * 20 19 18 40 40 H 1.09004 * 109.47148 * 294.95031 * 20 19 18 41 41 H 1.08999 * 109.47138 * 54.95176 * 20 19 18 42 42 H 1.09002 * 109.46888 * 310.82947 * 21 19 18 43 43 H 1.08999 * 109.46770 * 299.99828 * 22 21 19 44 44 H 1.08998 * 109.47128 * 59.99956 * 22 21 19 45 45 H 1.08999 * 109.46981 * 299.99339 * 23 22 21 46 46 H 1.08998 * 109.47158 * 179.97438 * 23 22 21 47 47 H 1.09005 * 109.46751 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.47011 * 60.00321 * 24 23 22 49 49 H 1.08999 * 109.47112 * 300.00379 * 25 24 23 50 50 H 1.08998 * 109.47089 * 180.02562 * 25 24 23 51 51 H 1.08997 * 109.47621 * 299.99786 * 26 21 19 52 52 H 1.08999 * 109.47317 * 60.00073 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1995 13 6 1.7518 0.0966 -2.4091 14 6 1.4352 -2.0359 -1.3071 15 7 2.3703 -2.9208 -2.0061 16 6 2.3919 -3.0948 -3.3324 17 8 1.6349 -2.5333 -4.0999 18 7 3.3417 -3.9646 -3.7213 19 6 4.0305 -4.4109 -2.4981 20 6 5.5115 -4.0291 -2.5406 21 6 3.8708 -5.9209 -2.3107 22 6 4.3544 -6.3156 -0.9138 23 6 4.1952 -7.8257 -0.7268 24 6 5.0259 -8.5606 -1.7807 25 6 4.5422 -8.1660 -3.1776 26 6 4.7011 -6.6562 -3.3646 27 6 3.3173 -3.6579 -1.3926 28 8 3.5474 -3.7114 -0.2035 29 1 -0.3633 0.6037 0.8317 30 1 -0.3633 0.4184 -0.9386 31 1 -0.3634 -1.0221 0.1070 32 1 0.7096 1.1619 3.4844 33 1 0.6752 0.1940 -2.5484 34 1 2.1954 1.0866 -2.3027 35 1 2.1861 -0.4052 -3.2738 36 1 0.5002 -1.9818 -1.8651 37 1 1.2404 -2.4285 -0.3091 38 1 3.5353 -4.2433 -4.6300 39 1 5.9809 -4.2877 -1.5914 40 1 6.0033 -4.5708 -3.3486 41 1 5.6055 -2.9568 -2.7121 42 1 2.8207 -6.1917 -2.4217 43 1 5.4044 -6.0448 -0.8030 44 1 3.7628 -5.7917 -0.1631 45 1 3.1453 -8.0969 -0.8378 46 1 4.5402 -8.1070 0.2681 47 1 4.9128 -9.6365 -1.6471 48 1 6.0758 -8.2895 -1.6697 49 1 3.4923 -8.4372 -3.2886 50 1 5.1337 -8.6899 -3.9284 51 1 4.3565 -6.3752 -4.3598 52 1 5.7511 -6.3854 -3.2538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728902932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:49 Heat of formation + Delta-G solvation = -48.876080 kcal Electronic energy + Delta-G solvation = -32128.269539 eV Core-core repulsion = 28128.217995 eV Total energy + Delta-G solvation = -4000.051544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.39307 -39.10936 -38.06771 -37.18749 -35.95537 -34.32533 -32.57768 -31.62037 -30.95615 -28.96732 -28.81385 -27.00790 -25.32255 -24.92418 -23.54483 -22.95006 -22.74705 -21.21239 -20.34494 -19.49381 -19.17225 -17.69970 -16.82613 -16.26610 -16.18048 -15.48682 -15.33861 -15.21658 -14.83539 -14.72014 -14.47489 -14.39034 -13.81782 -13.72106 -13.69159 -13.12439 -13.09835 -12.74250 -12.61158 -12.55474 -12.22044 -12.12826 -11.92366 -11.84046 -11.44077 -11.27167 -11.21780 -11.10640 -10.86042 -10.75856 -10.66637 -10.61905 -10.54889 -10.49029 -10.28517 -10.15149 -9.99109 -9.50972 -9.39434 -9.31729 -8.86515 -8.36404 -7.36367 -5.98982 -4.02103 1.97753 2.54136 3.26041 3.35940 3.36331 3.42072 3.49877 4.04575 4.28289 4.42396 4.46997 4.59825 4.69143 4.90068 5.05192 5.05638 5.10460 5.21389 5.28536 5.29771 5.33654 5.37612 5.39904 5.48827 5.53689 5.65236 5.79650 5.82021 5.86085 5.90773 5.94610 5.99368 6.02438 6.06357 6.10341 6.22503 6.24055 6.30364 6.33876 6.53511 6.71942 6.80812 6.89083 7.05193 7.26827 7.47297 7.62121 7.79433 7.89957 8.03696 8.28220 8.42623 8.53697 9.07973 9.64078 11.08504 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012683 B = 0.004132 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.181246 B = 6774.252278 C = 8434.364549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.216 3.784 3 H 0.045 0.955 4 C -0.505 4.505 5 H 0.072 0.928 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.547 5.547 13 C 0.027 3.973 14 C 0.289 3.711 15 N -0.563 5.563 16 C 0.703 3.297 17 O -0.551 6.551 18 N -0.726 5.726 19 C 0.123 3.877 20 C -0.148 4.148 21 C -0.077 4.077 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.113 4.113 27 C 0.532 3.468 28 O -0.443 6.443 29 H 0.088 0.912 30 H 0.011 0.989 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.023 0.977 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.118 0.882 38 H 0.432 0.568 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.061 0.939 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.930 -16.725 -12.555 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.110 3.890 3 H 0.063 0.937 4 C -0.544 4.544 5 H 0.090 0.910 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.272 5.272 13 C -0.122 4.122 14 C 0.079 3.921 15 N -0.310 5.310 16 C 0.404 3.596 17 O -0.425 6.425 18 N -0.390 5.390 19 C 0.032 3.968 20 C -0.206 4.206 21 C -0.096 4.096 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.151 4.151 27 C 0.317 3.683 28 O -0.310 6.310 29 H 0.107 0.893 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.275 0.725 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.987 -16.282 -12.006 21.750 hybrid contribution -0.499 -0.251 0.272 0.621 sum 7.489 -16.533 -11.734 21.613 Atomic orbital electron populations 1.22456 1.00377 1.00338 0.99898 1.19352 0.89904 0.94565 0.85144 0.93739 1.21239 1.30833 1.12913 0.89392 0.91019 1.24897 0.95045 0.95032 0.99004 1.69898 1.37078 1.23067 1.23438 0.86532 0.78428 0.80437 0.82324 1.20744 1.21503 1.19573 1.61879 1.59539 1.01621 1.04144 1.22378 0.98743 0.98056 0.92988 1.22099 0.86374 0.86257 0.97396 1.46772 1.34677 1.42032 1.07518 1.15992 0.81307 0.79712 0.82571 1.90965 1.43816 1.52478 1.55276 1.45652 1.36684 1.47572 1.09129 1.21507 0.95171 0.95998 0.84144 1.22052 0.91564 1.02896 1.04091 1.21313 1.01252 0.89991 0.97093 1.21796 1.02722 0.96090 0.95732 1.21514 1.00201 0.94976 0.98810 1.21561 0.99904 0.99611 0.94722 1.21504 1.01460 0.95475 0.97085 1.21633 1.00441 0.95124 0.97875 1.20548 0.79601 0.79112 0.89081 1.90804 1.64420 1.61782 1.13986 0.89306 0.96991 0.95150 0.93044 0.95894 0.92264 0.92547 0.91963 0.86393 0.72493 0.89787 0.90489 0.91253 0.90257 0.91166 0.89628 0.92106 0.91711 0.92247 0.91926 0.92022 0.91970 0.91984 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.27 37.16 0.31 -3.79 16 2 C 0.22 5.42 2.29 -68.86 -0.16 5.27 16 3 H 0.04 1.23 8.01 -51.93 -0.42 0.81 16 4 C -0.51 -13.85 7.59 -34.44 -0.26 -14.11 16 5 H 0.07 2.04 7.22 -52.49 -0.38 1.66 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -25.42 11.39 55.43 0.63 -24.79 16 8 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.55 -12.10 4.80 -240.20 -1.15 -13.25 16 13 C 0.03 0.53 9.10 60.06 0.55 1.08 16 14 C 0.29 5.90 4.01 -63.33 -0.25 5.65 16 15 N -0.56 -10.01 2.85 -124.03 -0.35 -10.36 16 16 C 0.70 11.39 8.15 -88.02 -0.72 10.67 16 17 O -0.55 -10.37 16.09 5.33 0.09 -10.29 16 18 N -0.73 -8.38 5.73 -52.94 -0.30 -8.68 16 19 C 0.12 1.42 0.76 -132.09 -0.10 1.32 16 20 C -0.15 -1.46 8.23 37.16 0.31 -1.16 16 21 C -0.08 -0.74 1.81 -90.62 -0.16 -0.90 16 22 C -0.13 -1.31 4.53 -26.73 -0.12 -1.43 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 24 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 25 C -0.12 -0.79 5.92 -26.75 -0.16 -0.94 16 26 C -0.11 -0.79 4.58 -26.75 -0.12 -0.91 16 27 C 0.53 8.84 6.63 -10.55 -0.07 8.77 16 28 O -0.44 -8.70 15.23 5.60 0.09 -8.62 16 29 H 0.09 2.33 6.26 -51.93 -0.32 2.00 16 30 H 0.01 0.25 6.54 -51.93 -0.34 -0.09 16 31 H 0.03 0.69 7.04 -51.93 -0.37 0.33 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.02 0.45 6.58 -51.93 -0.34 0.11 16 34 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 35 H 0.06 1.10 6.24 -51.93 -0.32 0.77 16 36 H 0.06 1.25 7.46 -51.92 -0.39 0.86 16 37 H 0.12 2.63 6.09 -51.93 -0.32 2.32 16 38 H 0.43 3.73 8.61 -40.82 -0.35 3.38 16 39 H 0.08 0.84 6.86 -51.93 -0.36 0.49 16 40 H 0.08 0.54 6.30 -51.93 -0.33 0.22 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.70 6.80 -51.93 -0.35 0.34 16 44 H 0.09 1.15 5.81 -51.93 -0.30 0.85 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 52 H 0.07 0.46 6.36 -51.93 -0.33 0.13 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -31.00 387.32 -10.12 -41.12 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.55 Total: 3.30 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -1.38 Total: 8.92 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -1.18 Total: -57.08 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.00 -10.12 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.753 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds