Wall clock time and date at job start Tue Mar 31 2020 20:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.50697 * 109.46849 * 119.99927 * 2 1 3 5 5 H 1.08002 * 119.99388 * 120.00285 * 4 2 1 6 6 C 1.37875 * 120.00184 * 300.00099 * 4 2 1 7 7 N 1.31512 * 120.00331 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46925 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46890 * 119.99765 * 8 6 4 11 11 H 1.48497 * 109.46901 * 240.00041 * 8 6 4 12 12 N 1.46896 * 109.47081 * 240.00433 * 2 1 3 13 13 C 1.46900 * 110.99883 * 306.04387 * 12 2 1 14 14 C 1.46894 * 111.00365 * 69.99697 * 12 2 1 15 15 N 1.46508 * 109.47091 * 154.99721 * 14 12 2 16 16 C 1.33785 * 124.17955 * 269.96400 * 15 14 12 17 17 O 1.21544 * 123.77411 * 0.03833 * 16 15 14 18 18 N 1.34865 * 112.50286 * 179.97438 * 16 15 14 19 19 C 1.47319 * 106.43788 * 0.13651 * 18 16 15 20 20 C 1.52997 * 110.60109 * 118.47643 * 19 18 16 21 21 C 1.53002 * 110.59727 * 241.27220 * 19 18 16 22 22 C 1.53001 * 109.46806 * 56.46645 * 21 19 18 23 23 C 1.53007 * 109.46556 * 180.02562 * 22 21 19 24 24 C 1.52992 * 109.47582 * 59.99950 * 23 22 21 25 25 C 1.53001 * 109.46977 * 300.00285 * 24 23 22 26 26 C 1.52996 * 109.46771 * 296.46764 * 21 19 18 27 27 C 1.34761 * 124.17342 * 90.00362 * 15 14 12 28 28 O 1.21240 * 127.16168 * 359.97438 * 27 15 14 29 29 H 1.09000 * 109.47084 * 300.00284 * 1 2 3 30 30 H 1.08999 * 109.46816 * 59.99927 * 1 2 3 31 31 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 32 32 H 0.96993 * 120.00340 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47122 * 183.96127 * 13 12 2 34 34 H 1.09007 * 109.47185 * 303.95296 * 13 12 2 35 35 H 1.09000 * 109.47192 * 63.95346 * 13 12 2 36 36 H 1.09000 * 109.46936 * 35.00624 * 14 12 2 37 37 H 1.08990 * 109.47396 * 274.99998 * 14 12 2 38 38 H 0.97004 * 126.87470 * 180.12913 * 18 16 15 39 39 H 1.09002 * 109.47153 * 182.82948 * 20 19 18 40 40 H 1.09001 * 109.46832 * 62.83139 * 20 19 18 41 41 H 1.09004 * 109.47261 * 302.83120 * 20 19 18 42 42 H 1.08997 * 109.46930 * 176.46802 * 21 19 18 43 43 H 1.08997 * 109.47240 * 299.99323 * 22 21 19 44 44 H 1.08995 * 109.47537 * 60.00381 * 22 21 19 45 45 H 1.09007 * 109.46601 * 299.99484 * 23 22 21 46 46 H 1.09003 * 109.46908 * 180.02562 * 23 22 21 47 47 H 1.08994 * 109.47549 * 180.02562 * 24 23 22 48 48 H 1.08997 * 109.47005 * 59.99542 * 24 23 22 49 49 H 1.09007 * 109.47105 * 299.99761 * 25 24 23 50 50 H 1.09004 * 109.47387 * 179.97438 * 25 24 23 51 51 H 1.09003 * 109.47294 * 299.99935 * 26 21 19 52 52 H 1.08997 * 109.47363 * 60.00303 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1677 -1.5867 4.8164 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0973 -2.4090 15 7 2.7157 -0.2662 -3.4518 16 6 3.8983 0.3347 -3.6253 17 8 4.2998 1.2490 -2.9323 18 7 4.5967 -0.1875 -4.6541 19 6 3.7622 -1.2604 -5.2223 20 6 3.4069 -0.9522 -6.6782 21 6 4.4759 -2.6098 -5.1181 22 6 4.8350 -2.8852 -3.6566 23 6 5.5492 -4.2343 -3.5525 24 6 6.8265 -4.2015 -4.3940 25 6 6.4674 -3.9259 -5.8555 26 6 5.7532 -2.5774 -5.9597 27 6 2.5191 -1.2468 -4.3551 28 8 1.5492 -1.9674 -4.4542 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7087 1.1612 3.4844 33 1 1.8665 -2.5520 -2.1648 34 1 1.6467 -2.5987 -0.3992 35 1 0.3556 -1.9520 -1.4399 36 1 1.8500 1.1583 -2.1789 37 1 0.7418 -0.1072 -2.7608 38 1 5.4748 0.0877 -4.9608 39 1 2.7493 -1.7310 -7.0644 40 1 4.3184 -0.9173 -7.2750 41 1 2.9001 0.0113 -6.7324 42 1 3.8186 -3.3978 -5.4855 43 1 5.4924 -2.0972 -3.2892 44 1 3.9250 -2.9082 -3.0570 45 1 4.8921 -5.0226 -3.9200 46 1 5.8046 -4.4308 -2.5112 47 1 7.3351 -5.1627 -4.3202 48 1 7.4835 -3.4132 -4.0265 49 1 5.8103 -4.7142 -6.2230 50 1 7.3775 -3.9021 -6.4550 51 1 5.4974 -2.3811 -7.0010 52 1 6.4105 -1.7894 -5.5923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728902934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:54 Heat of formation + Delta-G solvation = -48.959207 kcal Electronic energy + Delta-G solvation = -32210.523598 eV Core-core repulsion = 28210.468449 eV Total energy + Delta-G solvation = -4000.055149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53081 -38.89468 -38.32411 -37.18972 -35.96523 -34.48612 -32.54389 -31.54314 -30.98671 -29.35177 -28.72672 -27.06234 -25.23932 -24.97281 -23.74631 -22.97597 -22.66946 -21.09444 -20.27376 -19.84236 -19.23331 -17.77883 -16.90161 -16.40229 -15.98276 -15.66585 -15.39994 -15.22721 -14.90199 -14.48362 -14.44809 -14.31569 -14.00498 -13.79766 -13.69286 -13.59600 -13.17084 -12.94941 -12.77367 -12.50167 -12.42397 -12.23521 -11.85387 -11.59171 -11.39331 -11.31593 -11.18921 -11.15557 -10.89368 -10.74148 -10.68680 -10.66718 -10.54578 -10.47589 -10.26188 -10.07714 -10.00836 -9.79929 -9.53147 -9.32176 -8.90961 -8.38585 -7.35351 -6.00667 -4.03997 1.79813 2.43176 3.18850 3.31578 3.32367 3.39371 3.44116 3.95423 4.15581 4.39943 4.42798 4.55842 4.67904 4.89749 4.99652 5.02828 5.10873 5.19491 5.26411 5.27432 5.30776 5.32035 5.32855 5.37418 5.43949 5.65352 5.69788 5.72653 5.83327 5.85783 5.90838 5.91804 5.95571 5.99032 6.12494 6.12755 6.25569 6.31821 6.35336 6.62502 6.77721 6.85539 6.89420 7.04047 7.28255 7.39073 7.56145 7.67408 7.81420 8.05975 8.29948 8.40312 8.51957 9.00679 9.60615 11.06676 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.003715 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.636081 B = 7535.195998 C = 8456.878131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.217 3.783 3 H 0.044 0.956 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.542 5.542 13 C 0.036 3.964 14 C 0.281 3.719 15 N -0.561 5.561 16 C 0.707 3.293 17 O -0.531 6.531 18 N -0.726 5.726 19 C 0.123 3.877 20 C -0.147 4.147 21 C -0.077 4.077 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.113 4.113 27 C 0.533 3.467 28 O -0.471 6.471 29 H 0.091 0.909 30 H 0.006 0.994 31 H 0.034 0.966 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.433 0.567 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.068 0.932 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.295 -7.242 -20.991 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.111 3.889 3 H 0.062 0.938 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.267 5.267 13 C -0.112 4.112 14 C 0.070 3.930 15 N -0.307 5.307 16 C 0.407 3.593 17 O -0.403 6.403 18 N -0.392 5.392 19 C 0.032 3.968 20 C -0.205 4.205 21 C -0.097 4.097 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.150 4.150 27 C 0.319 3.681 28 O -0.341 6.341 29 H 0.110 0.890 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.278 0.722 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.302 -7.030 -20.353 23.077 hybrid contribution -0.211 -0.203 0.763 0.817 sum 8.091 -7.233 -19.589 22.395 Atomic orbital electron populations 1.22461 1.00368 0.99696 1.00706 1.19341 0.89854 0.94608 0.85059 0.93825 1.21069 1.30528 1.12483 0.89396 0.91914 1.24905 0.95210 0.95128 0.98972 1.69881 1.37054 1.23027 1.23368 0.86448 0.78505 0.79642 0.82855 1.19789 1.21035 1.21178 1.61959 1.59617 1.02967 1.02130 1.22293 0.96505 0.91138 1.01253 1.22065 0.87874 0.98936 0.84109 1.46685 1.19327 1.33706 1.30979 1.15946 0.80422 0.82028 0.80872 1.91027 1.71090 1.29641 1.48576 1.45703 1.21429 1.37623 1.34401 1.21492 0.89657 0.90327 0.95328 1.22014 1.03123 1.03224 0.92132 1.21366 0.97078 0.93670 0.97556 1.21640 1.01391 0.98111 0.94638 1.21476 0.96549 0.97052 1.00230 1.21552 0.97670 1.01515 0.95065 1.21501 1.00047 0.97057 0.96826 1.21601 0.95749 0.98203 0.99460 1.20664 0.87671 0.79026 0.80741 1.90766 1.31870 1.41046 1.70420 0.89002 0.97542 0.94706 0.93009 0.93964 0.90635 0.95876 0.88084 0.91679 0.72242 0.90038 0.90281 0.91505 0.89053 0.91203 0.91499 0.92001 0.91627 0.92141 0.91945 0.91867 0.91950 0.91327 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.26 37.16 0.31 -3.83 16 2 C 0.22 5.48 2.27 -68.87 -0.16 5.32 16 3 H 0.04 1.22 7.80 -51.93 -0.40 0.82 16 4 C -0.50 -13.65 7.91 -34.44 -0.27 -13.92 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.54 -11.87 4.80 -240.20 -1.15 -13.02 16 13 C 0.04 0.74 8.51 60.06 0.51 1.25 16 14 C 0.28 5.38 4.75 -63.31 -0.30 5.08 16 15 N -0.56 -9.34 2.82 -123.93 -0.35 -9.69 16 16 C 0.71 11.55 8.55 -87.72 -0.75 10.80 16 17 O -0.53 -10.88 17.48 5.33 0.09 -10.78 16 18 N -0.73 -8.15 4.77 -52.84 -0.25 -8.40 16 19 C 0.12 1.29 0.75 -132.09 -0.10 1.19 16 20 C -0.15 -1.12 8.60 37.16 0.32 -0.80 16 21 C -0.08 -0.72 1.71 -90.62 -0.16 -0.87 16 22 C -0.12 -1.41 4.69 -26.73 -0.13 -1.54 16 23 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 24 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 25 C -0.12 -0.79 5.92 -26.75 -0.16 -0.95 16 26 C -0.11 -0.76 4.73 -26.76 -0.13 -0.89 16 27 C 0.53 7.82 4.92 -10.56 -0.05 7.76 16 28 O -0.47 -7.82 16.62 5.59 0.09 -7.73 16 29 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 30 H 0.01 0.12 7.31 -51.93 -0.38 -0.26 16 31 H 0.03 0.81 6.41 -51.93 -0.33 0.47 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 33 H 0.04 0.80 5.70 -51.93 -0.30 0.51 16 34 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 35 H 0.02 0.47 6.38 -51.93 -0.33 0.13 16 36 H 0.10 2.01 7.36 -51.93 -0.38 1.63 16 37 H 0.07 1.20 7.43 -51.93 -0.39 0.81 16 38 H 0.43 3.76 8.31 -40.82 -0.34 3.42 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.42 6.52 -51.93 -0.34 0.08 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.90 7.57 -51.93 -0.39 0.51 16 44 H 0.07 0.99 6.73 -51.93 -0.35 0.64 16 45 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.07 0.37 6.50 -51.93 -0.34 0.03 16 52 H 0.06 0.43 7.29 -51.93 -0.38 0.06 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -31.50 390.25 -10.18 -41.68 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.63 Total: 2.67 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.47 Total: 7.69 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -1.13 Total: -55.97 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.19 Total: -18.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.50 -10.18 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.276 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds