Wall clock time and date at job start Tue Mar 31 2020 20:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.50697 * 109.46849 * 119.99927 * 2 1 3 5 5 H 1.08002 * 119.99388 * 120.00285 * 4 2 1 6 6 C 1.37875 * 120.00184 * 300.00099 * 4 2 1 7 7 N 1.31512 * 120.00331 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99930 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46925 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46890 * 119.99765 * 8 6 4 11 11 H 1.48497 * 109.46901 * 240.00041 * 8 6 4 12 12 N 1.46896 * 109.47081 * 240.00433 * 2 1 3 13 13 C 1.46900 * 110.99883 * 306.04387 * 12 2 1 14 14 C 1.46894 * 111.00365 * 69.99697 * 12 2 1 15 15 N 1.46508 * 109.47091 * 154.99721 * 14 12 2 16 16 C 1.33785 * 124.17955 * 269.96400 * 15 14 12 17 17 O 1.21544 * 123.77411 * 0.03833 * 16 15 14 18 18 N 1.34865 * 112.50286 * 179.97438 * 16 15 14 19 19 C 1.47319 * 106.43788 * 0.13651 * 18 16 15 20 20 C 1.52997 * 110.60109 * 118.47643 * 19 18 16 21 21 C 1.53002 * 110.59727 * 241.27220 * 19 18 16 22 22 C 1.53001 * 109.46806 * 56.46645 * 21 19 18 23 23 C 1.53007 * 109.46556 * 180.02562 * 22 21 19 24 24 C 1.52992 * 109.47582 * 59.99950 * 23 22 21 25 25 C 1.53001 * 109.46977 * 300.00285 * 24 23 22 26 26 C 1.52996 * 109.46771 * 296.46764 * 21 19 18 27 27 C 1.34761 * 124.17342 * 90.00362 * 15 14 12 28 28 O 1.21240 * 127.16168 * 359.97438 * 27 15 14 29 29 H 1.09000 * 109.47084 * 300.00284 * 1 2 3 30 30 H 1.08999 * 109.46816 * 59.99927 * 1 2 3 31 31 H 1.09000 * 109.47227 * 179.97438 * 1 2 3 32 32 H 0.96993 * 120.00340 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47122 * 183.96127 * 13 12 2 34 34 H 1.09007 * 109.47185 * 303.95296 * 13 12 2 35 35 H 1.09000 * 109.47192 * 63.95346 * 13 12 2 36 36 H 1.09000 * 109.46936 * 35.00624 * 14 12 2 37 37 H 1.08990 * 109.47396 * 274.99998 * 14 12 2 38 38 H 0.97004 * 126.87470 * 180.12913 * 18 16 15 39 39 H 1.09002 * 109.47153 * 182.82948 * 20 19 18 40 40 H 1.09001 * 109.46832 * 62.83139 * 20 19 18 41 41 H 1.09004 * 109.47261 * 302.83120 * 20 19 18 42 42 H 1.08997 * 109.46930 * 176.46802 * 21 19 18 43 43 H 1.08997 * 109.47240 * 299.99323 * 22 21 19 44 44 H 1.08995 * 109.47537 * 60.00381 * 22 21 19 45 45 H 1.09007 * 109.46601 * 299.99484 * 23 22 21 46 46 H 1.09003 * 109.46908 * 180.02562 * 23 22 21 47 47 H 1.08994 * 109.47549 * 180.02562 * 24 23 22 48 48 H 1.08997 * 109.47005 * 59.99542 * 24 23 22 49 49 H 1.09007 * 109.47105 * 299.99761 * 25 24 23 50 50 H 1.09004 * 109.47387 * 179.97438 * 25 24 23 51 51 H 1.09003 * 109.47294 * 299.99935 * 26 21 19 52 52 H 1.08997 * 109.47363 * 60.00303 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6037 10 1 3.1472 -0.1858 4.8160 11 1 1.1677 -1.5867 4.8164 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0973 -2.4090 15 7 2.7157 -0.2662 -3.4518 16 6 3.8983 0.3347 -3.6253 17 8 4.2998 1.2490 -2.9323 18 7 4.5967 -0.1875 -4.6541 19 6 3.7622 -1.2604 -5.2223 20 6 3.4069 -0.9522 -6.6782 21 6 4.4759 -2.6098 -5.1181 22 6 4.8350 -2.8852 -3.6566 23 6 5.5492 -4.2343 -3.5525 24 6 6.8265 -4.2015 -4.3940 25 6 6.4674 -3.9259 -5.8555 26 6 5.7532 -2.5774 -5.9597 27 6 2.5191 -1.2468 -4.3551 28 8 1.5492 -1.9674 -4.4542 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.7087 1.1612 3.4844 33 1 1.8665 -2.5520 -2.1648 34 1 1.6467 -2.5987 -0.3992 35 1 0.3556 -1.9520 -1.4399 36 1 1.8500 1.1583 -2.1789 37 1 0.7418 -0.1072 -2.7608 38 1 5.4748 0.0877 -4.9608 39 1 2.7493 -1.7310 -7.0644 40 1 4.3184 -0.9173 -7.2750 41 1 2.9001 0.0113 -6.7324 42 1 3.8186 -3.3978 -5.4855 43 1 5.4924 -2.0972 -3.2892 44 1 3.9250 -2.9082 -3.0570 45 1 4.8921 -5.0226 -3.9200 46 1 5.8046 -4.4308 -2.5112 47 1 7.3351 -5.1627 -4.3202 48 1 7.4835 -3.4132 -4.0265 49 1 5.8103 -4.7142 -6.2230 50 1 7.3775 -3.9021 -6.4550 51 1 5.4974 -2.3811 -7.0010 52 1 6.4105 -1.7894 -5.5923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728902934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:52 Heat of formation + Delta-G solvation = -69.845238 kcal Electronic energy + Delta-G solvation = -32211.429284 eV Core-core repulsion = 28210.468449 eV Total energy + Delta-G solvation = -4000.960835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.70921 -39.90588 -39.60384 -38.80730 -37.17133 -35.86703 -34.45627 -32.54784 -31.71125 -30.66973 -30.04097 -28.62246 -27.32367 -26.13451 -25.28878 -24.01249 -23.43714 -22.28321 -21.49789 -21.05805 -20.47051 -18.99588 -18.33946 -18.14203 -17.30515 -17.03620 -16.70004 -16.53150 -16.24694 -16.09218 -15.45176 -15.38732 -15.12917 -15.03099 -14.86833 -14.81687 -14.48298 -14.43224 -13.77328 -13.54301 -13.50373 -13.19925 -13.05016 -12.98805 -12.96360 -12.74289 -12.67701 -12.53453 -12.41528 -12.17894 -12.11344 -12.01746 -11.99978 -11.79498 -11.44619 -11.32773 -11.16653 -11.13876 -10.87317 -10.79313 -10.52986 -10.34527 -9.14188 -8.14013 -6.24828 0.59633 1.16527 1.39317 1.41161 1.52890 1.99785 2.18360 2.40930 2.88757 3.15143 3.28292 3.32466 3.62244 3.79650 3.82311 4.01131 4.15986 4.20286 4.33515 4.35192 4.38356 4.45679 4.52646 4.56084 4.58503 4.62862 4.63288 4.67471 4.70480 4.77240 4.82153 4.85338 5.01893 5.02760 5.03489 5.10739 5.21890 5.23527 5.25501 5.29963 5.40901 5.41146 5.45099 5.59566 5.63960 5.70048 5.85899 6.03608 6.14429 6.33166 6.39401 6.53149 6.84824 7.16205 7.43660 8.92541 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.003715 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.636081 B = 7535.195998 C = 8456.878131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.224 3.776 3 H 0.008 0.992 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.553 5.553 13 C 0.050 3.950 14 C 0.286 3.714 15 N -0.569 5.569 16 C 0.703 3.297 17 O -0.581 6.581 18 N -0.698 5.698 19 C 0.133 3.867 20 C -0.143 4.143 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.109 4.109 27 C 0.526 3.474 28 O -0.491 6.491 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.449 0.551 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.067 0.933 46 H 0.048 0.952 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.080 0.920 51 H 0.098 0.902 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.595 -8.777 -23.798 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.117 3.883 3 H 0.026 0.974 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.278 5.278 13 C -0.098 4.098 14 C 0.075 3.925 15 N -0.314 5.314 16 C 0.403 3.597 17 O -0.457 6.457 18 N -0.364 5.364 19 C 0.043 3.957 20 C -0.201 4.201 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.146 4.146 27 C 0.314 3.686 28 O -0.362 6.362 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.297 0.703 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.116 0.884 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.629 -8.599 -23.233 26.579 hybrid contribution -0.622 0.248 1.608 1.742 sum 9.007 -8.351 -21.625 24.870 Atomic orbital electron populations 1.22237 0.99328 0.99686 1.00450 1.19053 0.90508 0.92707 0.86020 0.97445 1.21280 1.30749 1.12434 0.90737 0.92927 1.25650 0.95319 0.95787 1.01702 1.69998 1.37689 1.24006 1.24099 0.85476 0.78140 0.78531 0.79285 1.19531 1.20740 1.20245 1.61830 1.60137 1.03583 1.02260 1.22150 0.96534 0.90214 1.00891 1.21845 0.89093 0.97839 0.83753 1.46635 1.19315 1.34670 1.30822 1.16105 0.80490 0.81609 0.81456 1.90993 1.72104 1.31922 1.50663 1.45569 1.21606 1.36763 1.32503 1.21692 0.87155 0.90675 0.96186 1.22098 1.05075 1.03376 0.89523 1.21393 0.98645 0.92689 0.96241 1.21585 0.99382 0.98699 0.95974 1.21463 0.97720 0.96067 0.99948 1.21546 0.96242 1.01909 0.95916 1.21504 1.00985 0.97036 0.95601 1.21643 0.93981 0.98606 1.00355 1.21438 0.88790 0.77833 0.80519 1.90747 1.33095 1.41450 1.70937 0.91452 0.95465 0.94406 0.92818 0.92759 0.92206 0.95628 0.89534 0.90797 0.70349 0.88993 0.86757 0.91870 0.88337 0.92875 0.95325 0.91473 0.93294 0.91265 0.92477 0.91244 0.90105 0.88399 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.74 8.26 71.98 0.59 -7.14 16 2 C 0.22 11.79 2.27 44.17 0.10 11.89 16 3 H 0.01 0.45 7.80 -2.38 -0.02 0.43 16 4 C -0.51 -29.20 7.91 25.60 0.20 -29.00 16 5 H 0.05 3.03 7.12 -2.91 -0.02 3.01 16 6 C 0.01 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 8 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 N -0.55 -25.21 4.80 -913.85 -4.39 -29.60 16 13 C 0.05 2.10 8.51 127.69 1.09 3.19 16 14 C 0.29 11.37 4.75 170.81 0.81 12.18 16 15 N -0.57 -19.28 2.82 -783.24 -2.21 -21.48 16 16 C 0.70 23.27 8.55 179.34 1.53 24.80 16 17 O -0.58 -24.68 17.48 -3.85 -0.07 -24.75 16 18 N -0.70 -14.66 4.77 -439.31 -2.10 -16.75 16 19 C 0.13 2.49 0.75 2.98 0.00 2.49 16 20 C -0.14 -1.61 8.60 71.98 0.62 -0.99 16 21 C -0.07 -1.13 1.71 -10.79 -0.02 -1.15 16 22 C -0.12 -2.74 4.69 30.60 0.14 -2.60 16 23 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 24 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 25 C -0.11 -1.08 5.92 30.58 0.18 -0.90 16 26 C -0.11 -1.01 4.73 30.58 0.14 -0.86 16 27 C 0.53 15.09 4.92 87.94 0.43 15.52 16 28 O -0.49 -15.96 16.62 -2.91 -0.05 -16.01 16 29 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 30 H 0.03 1.17 7.31 -2.39 -0.02 1.15 16 31 H 0.04 1.78 6.41 -2.39 -0.02 1.77 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.05 2.12 5.70 -2.39 -0.01 2.10 16 34 H 0.06 2.67 6.76 -2.38 -0.02 2.65 16 35 H 0.03 1.04 6.38 -2.39 -0.02 1.03 16 36 H 0.09 3.66 7.36 -2.39 -0.02 3.64 16 37 H 0.07 2.77 7.43 -2.39 -0.02 2.76 16 38 H 0.45 6.71 8.31 -92.71 -0.77 5.94 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 0.55 6.52 -2.39 -0.02 0.53 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.38 7.57 -2.39 -0.02 1.36 16 44 H 0.03 0.86 6.73 -2.39 -0.02 0.85 16 45 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 51 H 0.10 0.43 6.50 -2.39 -0.02 0.41 16 52 H 0.07 0.63 7.29 -2.39 -0.02 0.61 16 Total: -1.00 -71.95 390.25 0.26 -71.68 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.16 Total: 18.10 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 6.65 Total: 25.19 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -8.45 Total: -121.16 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -0.12 Total: -40.76 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.95 0.26 -71.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.836 kcal (2) G-P(sol) polarization free energy of solvation -71.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds