Wall clock time and date at job start Tue Mar 31 2020 20:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47004 * 2 1 4 4 C 1.50701 * 109.46650 * 239.99709 * 2 1 3 5 5 H 1.07996 * 120.00084 * 239.99723 * 4 2 1 6 6 C 1.37878 * 120.00066 * 60.00403 * 4 2 1 7 7 N 1.31522 * 119.99731 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00043 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46935 * 90.00088 * 8 6 4 10 10 H 1.48501 * 109.47117 * 209.99653 * 8 6 4 11 11 H 1.48501 * 109.47108 * 330.00027 * 8 6 4 12 12 N 1.46903 * 109.46926 * 119.99911 * 2 1 3 13 13 C 1.46896 * 111.00044 * 58.95335 * 12 2 1 14 14 C 1.46902 * 110.99939 * 294.99686 * 12 2 1 15 15 N 1.46495 * 109.46965 * 205.00335 * 14 12 2 16 16 C 1.33797 * 124.17642 * 270.04025 * 15 14 12 17 17 O 1.21534 * 123.77067 * 359.97438 * 16 15 14 18 18 N 1.34528 * 112.45642 * 179.97438 * 16 15 14 19 19 C 1.47308 * 106.62109 * 0.02562 * 18 16 15 20 20 C 1.52998 * 110.72964 * 241.40653 * 19 18 16 21 21 C 1.53002 * 110.60168 * 118.52327 * 19 18 16 22 22 C 1.52997 * 109.47143 * 65.82637 * 21 19 18 23 23 C 1.53002 * 109.46817 * 180.02562 * 22 21 19 24 24 C 1.53000 * 109.47233 * 60.00194 * 23 22 21 25 25 C 1.52997 * 109.47060 * 299.99657 * 24 23 22 26 26 C 1.52999 * 109.47317 * 59.99960 * 25 24 23 27 27 C 1.34763 * 124.18001 * 90.00170 * 15 14 12 28 28 O 1.21238 * 127.15892 * 359.97438 * 27 15 14 29 29 H 1.09006 * 109.47203 * 300.00391 * 1 2 3 30 30 H 1.09002 * 109.47467 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47767 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99527 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47460 * 296.04412 * 13 12 2 34 34 H 1.09005 * 109.47494 * 56.04274 * 13 12 2 35 35 H 1.08997 * 109.47221 * 176.04370 * 13 12 2 36 36 H 1.09004 * 109.46616 * 85.00377 * 14 12 2 37 37 H 1.08997 * 109.47130 * 325.00485 * 14 12 2 38 38 H 0.97006 * 126.68850 * 180.02562 * 18 16 15 39 39 H 1.09003 * 109.47351 * 297.07626 * 20 19 18 40 40 H 1.08996 * 109.47359 * 57.07399 * 20 19 18 41 41 H 1.08996 * 109.47192 * 177.08083 * 20 19 18 42 42 H 1.09002 * 109.47067 * 185.82655 * 21 19 18 43 43 H 1.08993 * 109.47194 * 59.99677 * 22 21 19 44 44 H 1.09002 * 109.46695 * 299.99691 * 22 21 19 45 45 H 1.08992 * 109.47063 * 299.99823 * 23 22 21 46 46 H 1.09004 * 109.46733 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47398 * 59.99826 * 24 23 22 48 48 H 1.09001 * 109.47194 * 180.02562 * 24 23 22 49 49 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.47153 * 300.00319 * 25 24 23 51 51 H 1.09000 * 109.47486 * 180.02562 * 26 25 24 52 52 H 1.09002 * 109.46716 * 60.00091 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3444 -2.1616 -4.4123 10 1 2.4870 -0.1404 -5.1121 11 1 3.6306 -1.7568 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 7 2.5925 -0.2871 3.4899 16 6 2.4322 -1.2994 4.3501 17 8 1.4822 -2.0571 4.3322 18 7 3.4402 -1.3846 5.2369 19 6 4.3757 -0.2923 4.9178 20 6 5.7482 -0.8494 4.5347 21 6 4.4988 0.6732 6.0983 22 6 5.1534 -0.0461 7.2793 23 6 5.2760 0.9193 8.4600 24 6 3.8838 1.4060 8.8674 25 6 3.2292 2.1253 7.6864 26 6 3.1066 1.1600 6.5057 27 6 3.7297 0.3946 3.7310 28 8 4.1491 1.3570 3.1245 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 0.7081 1.1608 -3.4844 33 1 0.4419 -2.0731 1.3348 34 1 1.8166 -2.5951 0.3319 35 1 1.9616 -2.5868 2.1059 36 1 0.6415 -0.2468 2.7212 37 1 1.6784 1.1109 2.2216 38 1 3.5329 -2.0379 5.9480 39 1 6.1742 -1.3824 5.3848 40 1 5.6405 -1.5341 3.6935 41 1 6.4077 -0.0286 4.2531 42 1 5.1117 1.5264 5.8075 43 1 6.1450 -0.3933 6.9890 44 1 4.5404 -0.8992 7.5701 45 1 5.8886 1.7726 8.1695 46 1 5.7419 0.4067 9.3016 47 1 3.2711 0.5526 9.1580 48 1 3.9712 2.0941 9.7082 49 1 2.2376 2.4725 7.9766 50 1 3.8419 2.9787 7.3958 51 1 2.6407 1.6726 5.6641 52 1 2.4939 0.3066 6.7962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728902936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:57 Heat of formation + Delta-G solvation = -49.080927 kcal Electronic energy + Delta-G solvation = -31807.453431 eV Core-core repulsion = 27807.393004 eV Total energy + Delta-G solvation = -4000.060427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55515 -39.03136 -38.25307 -37.20045 -36.00446 -34.49878 -32.56467 -31.60156 -31.11156 -29.34459 -28.71540 -27.05564 -25.19759 -25.05957 -23.65370 -23.01045 -22.78765 -21.23064 -20.26516 -19.94951 -19.21113 -17.75675 -16.90816 -16.39259 -16.15915 -15.70296 -15.34513 -15.23054 -14.89853 -14.60676 -14.45425 -14.36170 -14.09285 -13.81683 -13.73249 -13.59405 -13.12233 -12.95719 -12.75082 -12.50562 -12.43247 -12.31726 -11.84577 -11.56195 -11.48408 -11.44393 -11.20782 -11.16305 -10.87205 -10.81282 -10.75812 -10.69888 -10.58512 -10.56432 -10.37272 -10.10487 -9.98777 -9.78693 -9.52236 -9.37937 -8.89481 -8.40024 -7.34050 -6.01931 -4.05636 1.85921 2.43192 3.17286 3.27843 3.31650 3.38134 3.42574 3.95573 4.11275 4.33625 4.41709 4.45993 4.64293 4.83635 4.92553 4.99393 5.04418 5.15306 5.17805 5.20590 5.24119 5.29002 5.30791 5.40870 5.42129 5.57408 5.69188 5.71844 5.78445 5.80808 5.81779 5.84770 5.87348 5.95468 6.00219 6.02062 6.14921 6.29162 6.44552 6.64383 6.79590 6.81237 6.92352 7.04705 7.27420 7.40302 7.63270 7.69290 7.79360 8.04218 8.27122 8.36453 8.51431 8.98805 9.59027 11.05335 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002936 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.829720 B = 9533.231907 C = 9608.649481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.217 3.783 3 H 0.043 0.957 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.546 5.546 13 C 0.038 3.962 14 C 0.282 3.718 15 N -0.563 5.563 16 C 0.705 3.295 17 O -0.545 6.545 18 N -0.723 5.723 19 C 0.124 3.876 20 C -0.148 4.148 21 C -0.078 4.078 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.120 4.120 27 C 0.536 3.464 28 O -0.458 6.458 29 H 0.006 0.994 30 H 0.091 0.909 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.022 0.978 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.433 0.567 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.061 0.939 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 -0.278 23.459 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.111 3.889 3 H 0.061 0.939 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.271 5.271 13 C -0.111 4.111 14 C 0.071 3.929 15 N -0.310 5.310 16 C 0.406 3.594 17 O -0.419 6.419 18 N -0.388 5.388 19 C 0.033 3.967 20 C -0.206 4.206 21 C -0.098 4.098 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.157 4.157 27 C 0.321 3.679 28 O -0.327 6.327 29 H 0.025 0.975 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.277 0.723 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.163 0.010 22.806 24.222 hybrid contribution -0.604 -0.757 -0.616 1.147 sum 7.559 -0.747 22.190 23.454 Atomic orbital electron populations 1.22462 1.00379 0.99724 1.00718 1.19329 0.89901 0.94580 0.85062 0.93880 1.21059 1.30790 1.12532 0.89481 0.91893 1.24913 0.95192 0.95097 0.98990 1.69881 1.36933 1.22940 1.23500 0.86492 0.79234 0.79241 0.82414 1.20793 1.21252 1.19868 1.61989 1.60313 1.02828 1.01953 1.22276 0.97299 0.90052 1.01433 1.22039 0.88481 0.99112 0.83234 1.46692 1.24184 1.29463 1.30630 1.15917 0.83112 0.80893 0.79488 1.90989 1.32300 1.44532 1.74080 1.45625 1.23195 1.34244 1.35738 1.21520 0.92266 0.88327 0.94627 1.22015 0.93163 1.02529 1.02878 1.21374 0.98281 0.97294 0.92846 1.21619 1.00808 0.98309 0.94332 1.21518 0.97183 0.99228 0.97621 1.21550 0.96374 1.00162 0.97686 1.21491 1.00885 0.98124 0.94904 1.21633 0.95972 0.99650 0.98491 1.20572 0.80436 0.82940 0.83936 1.90794 1.65453 1.24223 1.52189 0.97471 0.89016 0.94743 0.92931 0.95915 0.90689 0.93614 0.91466 0.88365 0.72344 0.90405 0.91059 0.89895 0.88761 0.91043 0.91769 0.91733 0.91860 0.92009 0.92080 0.91852 0.91758 0.92076 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.34 37.16 0.31 -3.88 16 2 C 0.22 5.50 2.28 -68.86 -0.16 5.34 16 3 H 0.04 1.20 7.93 -51.93 -0.41 0.79 16 4 C -0.50 -13.78 7.88 -34.44 -0.27 -14.05 16 5 H 0.06 1.75 6.77 -52.49 -0.36 1.39 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.55 -12.16 4.84 -240.20 -1.16 -13.33 16 13 C 0.04 0.80 8.48 60.06 0.51 1.31 16 14 C 0.28 5.46 4.55 -63.32 -0.29 5.17 16 15 N -0.56 -9.43 2.82 -124.03 -0.35 -9.78 16 16 C 0.71 10.91 7.81 -88.01 -0.69 10.23 16 17 O -0.55 -10.06 16.06 5.34 0.09 -9.98 16 18 N -0.72 -7.82 4.71 -52.94 -0.25 -8.07 16 19 C 0.12 1.32 0.76 -132.09 -0.10 1.22 16 20 C -0.15 -1.35 8.55 37.16 0.32 -1.03 16 21 C -0.08 -0.67 1.72 -90.62 -0.16 -0.82 16 22 C -0.11 -0.69 4.70 -26.73 -0.13 -0.81 16 23 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 24 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 25 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 26 C -0.12 -1.12 4.67 -26.73 -0.12 -1.25 16 27 C 0.54 8.34 5.80 -10.56 -0.06 8.28 16 28 O -0.46 -8.50 17.76 5.59 0.10 -8.40 16 29 H 0.01 0.14 7.14 -51.93 -0.37 -0.23 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.81 6.47 -51.93 -0.34 0.48 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.02 0.48 6.43 -51.93 -0.33 0.15 16 34 H 0.07 1.67 6.42 -51.93 -0.33 1.34 16 35 H 0.05 0.93 6.11 -51.93 -0.32 0.61 16 36 H 0.07 1.29 7.23 -51.93 -0.38 0.91 16 37 H 0.10 1.92 7.58 -51.93 -0.39 1.52 16 38 H 0.43 3.51 8.40 -40.82 -0.34 3.17 16 39 H 0.08 0.49 6.49 -51.93 -0.34 0.15 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.37 6.46 -51.93 -0.34 0.04 16 44 H 0.06 0.37 7.40 -51.93 -0.38 -0.02 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.70 7.28 -51.93 -0.38 0.32 16 52 H 0.07 0.67 7.51 -51.93 -0.39 0.28 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -31.48 390.25 -10.14 -41.62 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.65 Total: 1.92 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.40 Total: 8.44 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -1.13 Total: -55.97 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.19 Total: -18.38 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.48 -10.14 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.463 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds