Wall clock time and date at job start Tue Mar 31 2020 20:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47004 * 2 1 4 4 C 1.50701 * 109.46650 * 239.99709 * 2 1 3 5 5 H 1.07996 * 120.00084 * 239.99723 * 4 2 1 6 6 C 1.37878 * 120.00066 * 60.00403 * 4 2 1 7 7 N 1.31522 * 119.99731 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00043 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46935 * 90.00088 * 8 6 4 10 10 H 1.48501 * 109.47117 * 209.99653 * 8 6 4 11 11 H 1.48501 * 109.47108 * 330.00027 * 8 6 4 12 12 N 1.46903 * 109.46926 * 119.99911 * 2 1 3 13 13 C 1.46896 * 111.00044 * 58.95335 * 12 2 1 14 14 C 1.46902 * 110.99939 * 294.99686 * 12 2 1 15 15 N 1.46495 * 109.46965 * 205.00335 * 14 12 2 16 16 C 1.33797 * 124.17642 * 270.04025 * 15 14 12 17 17 O 1.21534 * 123.77067 * 359.97438 * 16 15 14 18 18 N 1.34528 * 112.45642 * 179.97438 * 16 15 14 19 19 C 1.47308 * 106.62109 * 0.02562 * 18 16 15 20 20 C 1.52998 * 110.72964 * 241.40653 * 19 18 16 21 21 C 1.53002 * 110.60168 * 118.52327 * 19 18 16 22 22 C 1.52997 * 109.47143 * 65.82637 * 21 19 18 23 23 C 1.53002 * 109.46817 * 180.02562 * 22 21 19 24 24 C 1.53000 * 109.47233 * 60.00194 * 23 22 21 25 25 C 1.52997 * 109.47060 * 299.99657 * 24 23 22 26 26 C 1.52999 * 109.47317 * 59.99960 * 25 24 23 27 27 C 1.34763 * 124.18001 * 90.00170 * 15 14 12 28 28 O 1.21238 * 127.15892 * 359.97438 * 27 15 14 29 29 H 1.09006 * 109.47203 * 300.00391 * 1 2 3 30 30 H 1.09002 * 109.47467 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47767 * 180.02562 * 1 2 3 32 32 H 0.96998 * 119.99527 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.47460 * 296.04412 * 13 12 2 34 34 H 1.09005 * 109.47494 * 56.04274 * 13 12 2 35 35 H 1.08997 * 109.47221 * 176.04370 * 13 12 2 36 36 H 1.09004 * 109.46616 * 85.00377 * 14 12 2 37 37 H 1.08997 * 109.47130 * 325.00485 * 14 12 2 38 38 H 0.97006 * 126.68850 * 180.02562 * 18 16 15 39 39 H 1.09003 * 109.47351 * 297.07626 * 20 19 18 40 40 H 1.08996 * 109.47359 * 57.07399 * 20 19 18 41 41 H 1.08996 * 109.47192 * 177.08083 * 20 19 18 42 42 H 1.09002 * 109.47067 * 185.82655 * 21 19 18 43 43 H 1.08993 * 109.47194 * 59.99677 * 22 21 19 44 44 H 1.09002 * 109.46695 * 299.99691 * 22 21 19 45 45 H 1.08992 * 109.47063 * 299.99823 * 23 22 21 46 46 H 1.09004 * 109.46733 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47398 * 59.99826 * 24 23 22 48 48 H 1.09001 * 109.47194 * 180.02562 * 24 23 22 49 49 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 50 50 H 1.09002 * 109.47153 * 300.00319 * 25 24 23 51 51 H 1.09000 * 109.47486 * 180.02562 * 26 25 24 52 52 H 1.09002 * 109.46716 * 60.00091 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3444 -2.1616 -4.4123 10 1 2.4870 -0.1404 -5.1121 11 1 3.6306 -1.7568 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 7 2.5925 -0.2871 3.4899 16 6 2.4322 -1.2994 4.3501 17 8 1.4822 -2.0571 4.3322 18 7 3.4402 -1.3846 5.2369 19 6 4.3757 -0.2923 4.9178 20 6 5.7482 -0.8494 4.5347 21 6 4.4988 0.6732 6.0983 22 6 5.1534 -0.0461 7.2793 23 6 5.2760 0.9193 8.4600 24 6 3.8838 1.4060 8.8674 25 6 3.2292 2.1253 7.6864 26 6 3.1066 1.1600 6.5057 27 6 3.7297 0.3946 3.7310 28 8 4.1491 1.3570 3.1245 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 0.7081 1.1608 -3.4844 33 1 0.4419 -2.0731 1.3348 34 1 1.8166 -2.5951 0.3319 35 1 1.9616 -2.5868 2.1059 36 1 0.6415 -0.2468 2.7212 37 1 1.6784 1.1109 2.2216 38 1 3.5329 -2.0379 5.9480 39 1 6.1742 -1.3824 5.3848 40 1 5.6405 -1.5341 3.6935 41 1 6.4077 -0.0286 4.2531 42 1 5.1117 1.5264 5.8075 43 1 6.1450 -0.3933 6.9890 44 1 4.5404 -0.8992 7.5701 45 1 5.8886 1.7726 8.1695 46 1 5.7419 0.4067 9.3016 47 1 3.2711 0.5526 9.1580 48 1 3.9712 2.0941 9.7082 49 1 2.2376 2.4725 7.9766 50 1 3.8419 2.9787 7.3958 51 1 2.6407 1.6726 5.6641 52 1 2.4939 0.3066 6.7962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728902936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:56 Heat of formation + Delta-G solvation = -69.780537 kcal Electronic energy + Delta-G solvation = -31808.351033 eV Core-core repulsion = 27807.393004 eV Total energy + Delta-G solvation = -4000.958029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.73505 -40.00565 -39.51031 -38.82581 -37.17849 -35.87090 -34.45612 -32.58604 -31.70976 -30.65102 -30.05413 -28.66283 -27.25966 -26.26999 -25.15018 -24.06017 -23.43443 -22.36171 -21.45735 -21.07376 -20.46303 -18.99207 -18.29122 -18.13479 -17.47757 -16.97305 -16.71550 -16.53241 -16.31451 -15.95861 -15.49930 -15.42511 -15.12937 -15.04830 -14.86245 -14.73253 -14.55857 -14.38653 -13.80381 -13.54245 -13.48383 -13.19737 -13.08374 -13.02463 -12.94189 -12.74394 -12.69272 -12.55075 -12.43434 -12.16286 -12.09109 -12.01401 -11.97128 -11.82288 -11.44475 -11.32493 -11.17179 -11.11847 -10.87172 -10.79851 -10.53131 -10.37609 -9.15704 -8.14173 -6.25428 0.61910 1.17847 1.41529 1.42328 1.53118 1.96251 2.15440 2.41403 2.87132 3.15097 3.28628 3.32758 3.61424 3.79382 3.82346 4.00254 4.16163 4.19712 4.33315 4.36300 4.37908 4.45434 4.54790 4.56337 4.59338 4.63186 4.65228 4.68673 4.70691 4.76158 4.80712 4.82874 5.01907 5.03545 5.07747 5.08002 5.18014 5.23102 5.26191 5.30340 5.40339 5.42254 5.45383 5.59926 5.63656 5.69120 5.83249 6.00237 6.11739 6.32904 6.41792 6.52781 6.84377 7.13154 7.43175 8.92323 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002936 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.829720 B = 9533.231907 C = 9608.649481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.224 3.776 3 H 0.009 0.991 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.555 5.555 13 C 0.051 3.949 14 C 0.288 3.712 15 N -0.571 5.571 16 C 0.703 3.297 17 O -0.576 6.576 18 N -0.695 5.695 19 C 0.137 3.863 20 C -0.146 4.146 21 C -0.072 4.072 22 C -0.109 4.109 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.120 4.120 27 C 0.525 3.475 28 O -0.496 6.496 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.021 0.979 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.450 0.550 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.030 0.970 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.867 -1.635 25.609 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.117 3.883 3 H 0.027 0.973 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.280 5.280 13 C -0.097 4.097 14 C 0.077 3.923 15 N -0.317 5.317 16 C 0.403 3.597 17 O -0.452 6.452 18 N -0.360 5.360 19 C 0.047 3.953 20 C -0.204 4.204 21 C -0.091 4.091 22 C -0.146 4.146 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.158 4.158 27 C 0.313 3.687 28 O -0.367 6.367 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.298 0.702 39 H 0.136 0.864 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.049 0.951 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.971 -1.367 25.024 26.972 hybrid contribution -1.164 -0.263 -1.227 1.712 sum 8.807 -1.630 23.797 25.427 Atomic orbital electron populations 1.22249 0.99535 0.99581 1.00457 1.19052 0.90415 0.92837 0.86000 0.97263 1.21293 1.31059 1.12593 0.90702 0.92557 1.25680 0.95286 0.95754 1.01787 1.70003 1.37593 1.23964 1.24205 0.85499 0.78764 0.78243 0.78776 1.19968 1.20801 1.19586 1.61889 1.60751 1.03299 1.02080 1.22133 0.97116 0.89329 1.01097 1.21805 0.89409 0.98269 0.82865 1.46663 1.24412 1.30359 1.30269 1.15978 0.83597 0.80239 0.79837 1.90969 1.33743 1.45531 1.74998 1.45465 1.21556 1.34210 1.34814 1.21622 0.92390 0.88129 0.93207 1.22090 0.91739 1.02606 1.03926 1.21399 0.97969 0.96911 0.92860 1.21653 1.01626 0.98348 0.93008 1.21522 0.96652 0.99294 0.97899 1.21546 0.96773 1.00217 0.97026 1.21481 1.01022 0.97843 0.94916 1.21620 0.96315 0.99683 0.98136 1.21479 0.79953 0.82369 0.84848 1.90766 1.66204 1.25843 1.53861 0.95509 0.91374 0.94650 0.92792 0.96059 0.91948 0.92617 0.91281 0.89351 0.70188 0.86392 0.92766 0.89522 0.88914 0.89100 0.90759 0.91708 0.90210 0.91849 0.91276 0.92184 0.91926 0.95082 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 8.34 71.98 0.60 -7.26 16 2 C 0.22 11.74 2.28 44.17 0.10 11.84 16 3 H 0.01 0.56 7.93 -2.39 -0.02 0.54 16 4 C -0.52 -29.17 7.88 25.60 0.20 -28.97 16 5 H 0.06 3.18 6.77 -2.91 -0.02 3.16 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.25 11.32 21.45 0.24 -53.00 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.55 -25.42 4.84 -913.84 -4.42 -29.84 16 13 C 0.05 2.21 8.48 127.69 1.08 3.29 16 14 C 0.29 11.53 4.55 170.81 0.78 12.30 16 15 N -0.57 -19.43 2.82 -783.56 -2.21 -21.64 16 16 C 0.70 21.34 7.81 179.44 1.40 22.74 16 17 O -0.58 -20.97 16.06 -3.82 -0.06 -21.03 16 18 N -0.69 -13.65 4.71 -439.82 -2.07 -15.72 16 19 C 0.14 2.70 0.76 2.99 0.00 2.71 16 20 C -0.15 -2.26 8.55 71.98 0.62 -1.64 16 21 C -0.07 -1.08 1.72 -10.79 -0.02 -1.10 16 22 C -0.11 -0.89 4.70 30.59 0.14 -0.75 16 23 C -0.12 -0.91 5.92 30.60 0.18 -0.73 16 24 C -0.12 -1.19 5.92 30.59 0.18 -1.01 16 25 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 26 C -0.12 -2.15 4.67 30.60 0.14 -2.01 16 27 C 0.53 16.55 5.80 87.94 0.51 17.06 16 28 O -0.50 -19.07 17.76 -2.90 -0.05 -19.12 16 29 H 0.03 1.17 7.14 -2.38 -0.02 1.15 16 30 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 31 H 0.03 1.69 6.47 -2.39 -0.02 1.68 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.02 0.90 6.43 -2.39 -0.02 0.89 16 34 H 0.06 2.82 6.42 -2.38 -0.02 2.80 16 35 H 0.06 2.27 6.11 -2.39 -0.01 2.25 16 36 H 0.07 2.72 7.23 -2.38 -0.02 2.70 16 37 H 0.09 3.66 7.58 -2.39 -0.02 3.64 16 38 H 0.45 5.84 8.40 -92.70 -0.78 5.07 16 39 H 0.12 0.91 6.49 -2.39 -0.02 0.89 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 0.46 6.46 -2.39 -0.02 0.45 16 44 H 0.07 0.50 7.40 -2.39 -0.02 0.49 16 45 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.03 0.73 7.28 -2.39 -0.02 0.72 16 52 H 0.07 1.20 7.51 -2.39 -0.02 1.19 16 Total: -1.00 -70.31 390.25 0.15 -70.16 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.15 Total: 17.51 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 6.55 Total: 26.23 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -8.46 Total: -120.20 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.11 Total: -40.14 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.31 0.15 -70.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.375 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds