Wall clock time and date at job start Tue Mar 31 2020 20:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46966 * 2 1 4 4 C 1.50693 * 109.47400 * 120.00549 * 2 1 3 5 5 O 1.21279 * 120.00151 * 102.65065 * 4 2 1 6 6 N 1.34785 * 119.99999 * 282.65034 * 4 2 1 7 7 C 1.47081 * 120.87711 * 354.84120 * 6 4 2 8 8 C 1.53238 * 108.51992 * 231.20224 * 7 6 4 9 9 N 1.46894 * 109.34323 * 306.17614 * 8 7 6 10 10 C 1.46902 * 111.00047 * 187.25216 * 9 8 7 11 11 C 1.53497 * 114.20538 * 179.97438 * 10 9 8 12 12 N 1.47066 * 87.98389 * 220.34353 * 11 10 9 13 13 C 1.36943 * 136.05527 * 207.08427 * 12 11 10 14 14 H 1.07994 * 120.00317 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99716 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99785 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99725 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46984 * 60.00587 * 17 15 13 19 19 H 1.48504 * 109.46939 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47371 * 299.99879 * 17 15 13 21 21 C 1.47069 * 87.88457 * 27.12183 * 12 11 10 22 22 C 1.46897 * 111.27028 * 63.10273 * 9 8 7 23 23 C 1.47070 * 120.88182 * 174.86441 * 6 4 2 24 24 C 1.53003 * 109.46848 * 240.00563 * 2 1 3 25 25 H 1.08999 * 109.82339 * 185.56861 * 24 2 1 26 26 C 1.54383 * 109.83057 * 64.58423 * 24 2 1 27 27 C 1.55303 * 102.25168 * 219.12883 * 26 24 2 28 28 C 1.54948 * 100.94188 * 34.13539 * 27 26 24 29 29 O 1.43236 * 109.82961 * 306.44963 * 24 2 1 30 30 H 1.08992 * 109.47097 * 173.63981 * 1 2 3 31 31 H 1.09004 * 109.46569 * 293.63624 * 1 2 3 32 32 H 1.08999 * 109.47590 * 53.63369 * 1 2 3 33 33 H 1.09002 * 109.62549 * 111.49889 * 7 6 4 34 34 H 1.08997 * 109.63077 * 350.91644 * 7 6 4 35 35 H 1.08999 * 109.49520 * 186.20889 * 8 7 6 36 36 H 1.09003 * 109.48834 * 66.13323 * 8 7 6 37 37 H 1.08996 * 113.41418 * 313.19715 * 10 9 8 38 38 H 1.09001 * 113.46589 * 105.56572 * 11 10 9 39 39 H 1.08994 * 113.47026 * 335.12937 * 11 10 9 40 40 H 0.97001 * 119.99449 * 179.97438 * 16 15 13 41 41 H 1.08997 * 113.46174 * 87.66049 * 21 12 11 42 42 H 1.08999 * 113.46541 * 218.03956 * 21 12 11 43 43 H 1.09001 * 109.49584 * 56.85931 * 22 9 8 44 44 H 1.09002 * 109.49645 * 176.93713 * 22 9 8 45 45 H 1.09000 * 109.62795 * 248.50425 * 23 6 4 46 46 H 1.08999 * 109.63517 * 8.89084 * 23 6 4 47 47 H 1.08997 * 110.84834 * 337.32347 * 26 24 2 48 48 H 1.09004 * 110.84473 * 100.94025 * 26 24 2 49 49 H 1.09003 * 111.12793 * 276.21909 * 27 26 24 50 50 H 1.08999 * 111.12396 * 152.05628 * 27 26 24 51 51 H 1.09003 * 110.31193 * 204.63792 * 28 27 26 52 52 H 1.09000 * 110.39069 * 82.51001 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.4514 -1.8455 1.1465 6 7 2.0160 -0.0845 2.4239 7 6 1.6185 1.3275 2.5303 8 6 2.6987 2.0794 3.3153 9 7 2.9296 1.4008 4.5974 10 6 3.8317 2.1838 5.4525 11 6 4.1234 1.5402 6.8152 12 7 4.0238 2.8809 7.4114 13 6 4.5399 3.5114 8.5121 14 1 5.2007 2.9783 9.1795 15 6 4.2136 4.8358 8.7700 16 7 3.4078 5.4853 7.9568 17 14 4.9170 5.6955 10.2717 18 1 6.3998 5.7008 10.1899 19 1 4.4195 7.0939 10.3198 20 1 4.4914 4.9758 11.4989 21 6 3.1253 3.2463 6.3059 22 6 3.4453 0.0403 4.3949 23 6 2.3957 -0.7952 3.6542 24 6 2.0399 -0.7212 -1.2494 25 1 3.1253 -0.8115 -1.2069 26 6 1.6268 0.0642 -2.5127 27 6 1.2538 -1.0741 -3.5011 28 6 0.6554 -2.1227 -2.5298 29 8 1.4471 -2.0222 -1.3354 30 1 -0.3633 -1.0213 -0.1138 31 1 -0.3632 0.4120 0.9415 32 1 -0.3634 0.6093 -0.8275 33 1 0.6662 1.4012 3.0555 34 1 1.5243 1.7576 1.5332 35 1 2.3693 3.1021 3.4991 36 1 3.6239 2.0930 2.7391 37 1 4.7171 2.5464 4.9305 38 1 5.1210 1.1068 6.8858 39 1 3.3421 0.8575 7.1490 40 1 3.1795 6.4107 8.1373 41 1 2.0781 3.0179 6.5042 42 1 3.2736 4.2637 5.9442 43 1 4.3601 0.0822 3.8037 44 1 3.6573 -0.4161 5.3618 45 1 1.5181 -0.9256 4.2874 46 1 2.8121 -1.7701 3.4005 47 1 0.7649 0.6998 -2.3098 48 1 2.4619 0.6515 -2.8947 49 1 2.1391 -1.4642 -4.0034 50 1 0.5100 -0.7387 -4.2239 51 1 0.7377 -3.1229 -2.9552 52 1 -0.3870 -1.8888 -2.3135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941555181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:35 Heat of formation + Delta-G solvation = -3.902446 kcal Electronic energy + Delta-G solvation = -30387.247097 eV Core-core repulsion = 26389.145756 eV Total energy + Delta-G solvation = -3998.101341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.76535 -39.54806 -38.54245 -36.76045 -34.29239 -33.50217 -32.28677 -31.90026 -31.07203 -28.68231 -28.06358 -26.41096 -25.12550 -24.67472 -23.23338 -22.80557 -22.27745 -21.62551 -20.40365 -19.12189 -18.72362 -17.45697 -17.07732 -16.72504 -16.27235 -15.93245 -15.43162 -15.18695 -14.96013 -14.73496 -14.69265 -14.32147 -14.14204 -14.10981 -13.72486 -13.36089 -12.99670 -12.69873 -12.46115 -12.34619 -12.25460 -12.10702 -12.03493 -11.88087 -11.61778 -11.50713 -11.48488 -11.30349 -11.18619 -11.08485 -11.01803 -10.97973 -10.78451 -10.66047 -10.05638 -9.76628 -9.69579 -9.59263 -9.18593 -8.82157 -8.67986 -7.99696 -6.87861 -5.77254 -3.09496 2.63518 2.90950 3.39601 3.43253 3.44668 3.57619 4.07904 4.09253 4.26529 4.42333 4.49007 4.52655 4.69124 4.75682 4.85554 4.90712 4.96458 5.05763 5.11533 5.22749 5.24535 5.30232 5.34297 5.34872 5.40388 5.41794 5.49479 5.51863 5.55297 5.57754 5.59909 5.66992 5.75221 5.77516 5.88914 5.92615 5.93239 5.98405 6.09889 6.39210 6.47786 6.61990 6.65533 6.86381 7.06455 7.23604 7.30919 7.40549 7.53944 7.68076 7.97775 8.20116 9.03720 9.69723 10.64291 11.40417 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034092 B = 0.002050 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.119674 B =13657.209968 C =14094.139382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 H 0.101 0.899 4 C 0.519 3.481 5 O -0.527 6.527 6 N -0.614 5.614 7 C 0.111 3.889 8 C 0.042 3.958 9 N -0.521 5.521 10 C 0.019 3.981 11 C 0.128 3.872 12 N -0.611 5.611 13 C -0.216 4.216 14 H 0.081 0.919 15 C -0.009 4.009 16 N -0.920 5.920 17 Si 0.914 3.086 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.174 3.826 22 C 0.043 3.957 23 C 0.118 3.882 24 C 0.101 3.899 25 H 0.082 0.918 26 C -0.155 4.155 27 C -0.156 4.156 28 C 0.044 3.956 29 O -0.352 6.352 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.033 0.967 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.041 0.959 40 H 0.254 0.746 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.952 -10.479 -23.451 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 H 0.119 0.881 4 C 0.307 3.693 5 O -0.403 6.403 6 N -0.349 5.349 7 C -0.012 4.012 8 C -0.087 4.087 9 N -0.247 5.247 10 C -0.090 4.090 11 C 0.001 3.999 12 N -0.337 5.337 13 C -0.343 4.343 14 H 0.098 0.902 15 C -0.205 4.205 16 N -0.567 5.567 17 Si 0.744 3.256 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.211 1.211 21 C 0.048 3.952 22 C -0.086 4.086 23 C -0.005 4.005 24 C 0.043 3.957 25 H 0.100 0.900 26 C -0.192 4.192 27 C -0.193 4.193 28 C -0.033 4.033 29 O -0.270 6.270 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.082 -11.004 -22.845 26.328 hybrid contribution 0.995 0.917 0.370 1.402 sum -6.088 -10.088 -22.476 25.377 Atomic orbital electron populations 1.21738 0.92245 1.03419 1.02518 1.21777 0.98661 1.00407 0.93671 0.88120 1.20441 0.78140 0.86716 0.84026 1.90717 1.45923 1.18342 1.85312 1.48216 1.67364 1.12238 1.07042 1.21941 0.98636 0.80137 1.00460 1.22419 0.97352 0.98705 0.90203 1.62148 1.47320 1.01711 1.13531 1.24068 0.94914 0.97929 0.92075 1.22415 0.97803 0.90208 0.89459 1.45363 1.53384 1.07310 1.27624 1.18862 1.22350 0.93491 0.99625 0.90158 1.24804 0.99839 0.96709 0.99165 1.69823 1.38511 1.10524 1.37840 0.86168 0.78477 0.78672 0.82255 1.21082 1.21530 1.21126 1.22028 0.92751 0.95910 0.84542 1.22430 0.95501 0.90351 1.00343 1.21709 0.98498 0.95887 0.84391 1.22465 0.97744 0.83151 0.92339 0.90049 1.23268 1.02714 0.98482 0.94749 1.23253 1.01785 0.95982 0.98304 1.23421 0.95066 0.99548 0.85269 1.88659 1.65616 1.31060 1.41713 0.91224 0.91769 0.91598 0.90354 0.89752 0.89045 0.94859 0.91683 0.94713 0.94196 0.93600 0.94825 0.91495 0.94912 0.89336 0.90862 0.89048 0.89883 0.89884 0.90392 0.90012 0.89975 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.57 37.16 0.32 -0.79 16 2 C -0.12 -1.13 1.71 -91.77 -0.16 -1.29 16 3 H 0.10 0.72 6.45 -51.93 -0.33 0.39 16 4 C 0.52 6.68 6.85 -10.98 -0.08 6.61 16 5 O -0.53 -8.82 14.84 -12.11 -0.18 -9.00 16 6 N -0.61 -7.45 3.01 -172.47 -0.52 -7.97 16 7 C 0.11 1.15 5.67 -3.60 -0.02 1.13 16 8 C 0.04 0.54 5.61 -3.70 -0.02 0.52 16 9 N -0.52 -7.98 4.62 -226.12 -1.04 -9.02 16 10 C 0.02 0.35 3.53 -67.60 -0.24 0.11 16 11 C 0.13 2.66 7.13 -8.51 -0.06 2.60 16 12 N -0.61 -15.89 3.78 -184.79 -0.70 -16.59 16 13 C -0.22 -6.11 10.75 -15.06 -0.16 -6.27 16 14 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 16 N -0.92 -27.28 11.51 55.49 0.64 -26.64 16 17 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.17 4.07 7.21 -8.51 -0.06 4.01 16 22 C 0.04 0.59 5.46 -3.70 -0.02 0.57 16 23 C 0.12 1.51 6.61 -3.61 -0.02 1.49 16 24 C 0.10 0.95 2.82 -26.00 -0.07 0.88 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 C -0.15 -0.94 6.36 -24.79 -0.16 -1.10 16 27 C -0.16 -0.89 7.16 -24.48 -0.18 -1.06 16 28 C 0.04 0.34 7.58 38.19 0.29 0.63 16 29 O -0.35 -4.09 9.01 -52.90 -0.48 -4.56 16 30 H 0.07 0.66 7.08 -51.93 -0.37 0.29 16 31 H 0.06 0.49 7.34 -51.93 -0.38 0.11 16 32 H 0.07 0.38 6.54 -51.93 -0.34 0.04 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.65 5.51 -51.93 -0.29 0.36 16 35 H 0.09 1.18 8.11 -51.93 -0.42 0.75 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.82 7.90 -51.93 -0.41 0.41 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.73 7.12 -51.93 -0.37 1.36 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.21 6.82 -51.93 -0.35 0.86 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 1.23 7.04 -51.93 -0.37 0.87 16 47 H 0.08 0.42 6.15 -51.93 -0.32 0.10 16 48 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.06 0.39 8.01 -51.93 -0.42 -0.03 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -34.16 394.08 -11.08 -45.25 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.98 Total: -2.21 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.73 Total: 7.68 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -1.62 Total: -60.22 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.66 Total: -13.56 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.16 -11.08 -45.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941555181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.345 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds