Wall clock time and date at job start Tue Mar 31 2020 20:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46966 * 2 1 4 4 C 1.50693 * 109.47400 * 120.00549 * 2 1 3 5 5 O 1.21279 * 120.00151 * 102.65065 * 4 2 1 6 6 N 1.34785 * 119.99999 * 282.65034 * 4 2 1 7 7 C 1.47081 * 120.87711 * 354.84120 * 6 4 2 8 8 C 1.53238 * 108.51992 * 231.20224 * 7 6 4 9 9 N 1.46894 * 109.34323 * 306.17614 * 8 7 6 10 10 C 1.46902 * 111.00047 * 187.25216 * 9 8 7 11 11 C 1.53497 * 114.20538 * 179.97438 * 10 9 8 12 12 N 1.47066 * 87.98389 * 220.34353 * 11 10 9 13 13 C 1.36943 * 136.05527 * 207.08427 * 12 11 10 14 14 H 1.07994 * 120.00317 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99716 * 180.02562 * 13 12 11 16 16 N 1.31620 * 119.99785 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99725 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46984 * 60.00587 * 17 15 13 19 19 H 1.48504 * 109.46939 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47371 * 299.99879 * 17 15 13 21 21 C 1.47069 * 87.88457 * 27.12183 * 12 11 10 22 22 C 1.46897 * 111.27028 * 63.10273 * 9 8 7 23 23 C 1.47070 * 120.88182 * 174.86441 * 6 4 2 24 24 C 1.53003 * 109.46848 * 240.00563 * 2 1 3 25 25 H 1.08999 * 109.82339 * 185.56861 * 24 2 1 26 26 C 1.54383 * 109.83057 * 64.58423 * 24 2 1 27 27 C 1.55303 * 102.25168 * 219.12883 * 26 24 2 28 28 C 1.54948 * 100.94188 * 34.13539 * 27 26 24 29 29 O 1.43236 * 109.82961 * 306.44963 * 24 2 1 30 30 H 1.08992 * 109.47097 * 173.63981 * 1 2 3 31 31 H 1.09004 * 109.46569 * 293.63624 * 1 2 3 32 32 H 1.08999 * 109.47590 * 53.63369 * 1 2 3 33 33 H 1.09002 * 109.62549 * 111.49889 * 7 6 4 34 34 H 1.08997 * 109.63077 * 350.91644 * 7 6 4 35 35 H 1.08999 * 109.49520 * 186.20889 * 8 7 6 36 36 H 1.09003 * 109.48834 * 66.13323 * 8 7 6 37 37 H 1.08996 * 113.41418 * 313.19715 * 10 9 8 38 38 H 1.09001 * 113.46589 * 105.56572 * 11 10 9 39 39 H 1.08994 * 113.47026 * 335.12937 * 11 10 9 40 40 H 0.97001 * 119.99449 * 179.97438 * 16 15 13 41 41 H 1.08997 * 113.46174 * 87.66049 * 21 12 11 42 42 H 1.08999 * 113.46541 * 218.03956 * 21 12 11 43 43 H 1.09001 * 109.49584 * 56.85931 * 22 9 8 44 44 H 1.09002 * 109.49645 * 176.93713 * 22 9 8 45 45 H 1.09000 * 109.62795 * 248.50425 * 23 6 4 46 46 H 1.08999 * 109.63517 * 8.89084 * 23 6 4 47 47 H 1.08997 * 110.84834 * 337.32347 * 26 24 2 48 48 H 1.09004 * 110.84473 * 100.94025 * 26 24 2 49 49 H 1.09003 * 111.12793 * 276.21909 * 27 26 24 50 50 H 1.08999 * 111.12396 * 152.05628 * 27 26 24 51 51 H 1.09003 * 110.31193 * 204.63792 * 28 27 26 52 52 H 1.09000 * 110.39069 * 82.51001 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.4514 -1.8455 1.1465 6 7 2.0160 -0.0845 2.4239 7 6 1.6185 1.3275 2.5303 8 6 2.6987 2.0794 3.3153 9 7 2.9296 1.4008 4.5974 10 6 3.8317 2.1838 5.4525 11 6 4.1234 1.5402 6.8152 12 7 4.0238 2.8809 7.4114 13 6 4.5399 3.5114 8.5121 14 1 5.2007 2.9783 9.1795 15 6 4.2136 4.8358 8.7700 16 7 3.4078 5.4853 7.9568 17 14 4.9170 5.6955 10.2717 18 1 6.3998 5.7008 10.1899 19 1 4.4195 7.0939 10.3198 20 1 4.4914 4.9758 11.4989 21 6 3.1253 3.2463 6.3059 22 6 3.4453 0.0403 4.3949 23 6 2.3957 -0.7952 3.6542 24 6 2.0399 -0.7212 -1.2494 25 1 3.1253 -0.8115 -1.2069 26 6 1.6268 0.0642 -2.5127 27 6 1.2538 -1.0741 -3.5011 28 6 0.6554 -2.1227 -2.5298 29 8 1.4471 -2.0222 -1.3354 30 1 -0.3633 -1.0213 -0.1138 31 1 -0.3632 0.4120 0.9415 32 1 -0.3634 0.6093 -0.8275 33 1 0.6662 1.4012 3.0555 34 1 1.5243 1.7576 1.5332 35 1 2.3693 3.1021 3.4991 36 1 3.6239 2.0930 2.7391 37 1 4.7171 2.5464 4.9305 38 1 5.1210 1.1068 6.8858 39 1 3.3421 0.8575 7.1490 40 1 3.1795 6.4107 8.1373 41 1 2.0781 3.0179 6.5042 42 1 3.2736 4.2637 5.9442 43 1 4.3601 0.0822 3.8037 44 1 3.6573 -0.4161 5.3618 45 1 1.5181 -0.9256 4.2874 46 1 2.8121 -1.7701 3.4005 47 1 0.7649 0.6998 -2.3098 48 1 2.4619 0.6515 -2.8947 49 1 2.1391 -1.4642 -4.0034 50 1 0.5100 -0.7387 -4.2239 51 1 0.7377 -3.1229 -2.9552 52 1 -0.3870 -1.8888 -2.3135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941555181.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:34 Heat of formation + Delta-G solvation = -26.595917 kcal Electronic energy + Delta-G solvation = -30388.231159 eV Core-core repulsion = 26389.145756 eV Total energy + Delta-G solvation = -3999.085404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65821 -40.60573 -39.80563 -38.07568 -35.38596 -34.59303 -33.78932 -32.85191 -32.07419 -29.88652 -29.16533 -27.81904 -26.61131 -25.65597 -24.51825 -24.29744 -23.05450 -22.40775 -21.34548 -20.75356 -19.68539 -18.79117 -18.29626 -17.74705 -17.07629 -16.95907 -16.82113 -16.50033 -16.28757 -16.01934 -15.80155 -15.52721 -15.18561 -14.96676 -14.75302 -14.43768 -14.12240 -13.98200 -13.78754 -13.36547 -13.34832 -13.11300 -13.01934 -12.89087 -12.80851 -12.65590 -12.62317 -12.50454 -12.36685 -12.23572 -12.20676 -11.99928 -11.91388 -11.79594 -11.68760 -11.54862 -11.00184 -10.86221 -10.57089 -10.38362 -9.77673 -9.24661 -8.93640 -7.91452 -5.25553 1.45901 1.49765 1.55773 1.66947 1.96980 2.45048 2.84466 2.99760 3.30071 3.47724 3.52869 3.60051 3.65703 3.77706 3.93445 4.01025 4.03054 4.08237 4.17309 4.24192 4.26029 4.32699 4.38542 4.42042 4.43889 4.56408 4.67788 4.70255 4.76224 4.80484 4.82225 4.85726 4.87839 4.91277 4.92434 4.95001 4.97628 5.03084 5.10832 5.11396 5.23360 5.25350 5.36342 5.41248 5.49436 5.50427 5.90589 6.10168 6.16724 6.25073 6.47327 6.90334 7.22603 7.58311 8.59608 9.26114 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034092 B = 0.002050 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.119674 B =13657.209968 C =14094.139382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 H 0.128 0.872 4 C 0.514 3.486 5 O -0.573 6.573 6 N -0.615 5.615 7 C 0.118 3.882 8 C 0.040 3.960 9 N -0.526 5.526 10 C 0.055 3.945 11 C 0.130 3.870 12 N -0.644 5.644 13 C -0.232 4.232 14 H 0.085 0.915 15 C -0.067 4.067 16 N -0.951 5.951 17 Si 0.983 3.017 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.277 1.277 21 C 0.177 3.823 22 C 0.050 3.950 23 C 0.122 3.878 24 C 0.094 3.906 25 H 0.059 0.941 26 C -0.146 4.146 27 C -0.149 4.149 28 C 0.035 3.965 29 O -0.389 6.389 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.250 0.750 41 H 0.021 0.979 42 H 0.036 0.964 43 H 0.029 0.971 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.081 0.919 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 -9.925 -24.908 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 H 0.145 0.855 4 C 0.303 3.697 5 O -0.452 6.452 6 N -0.348 5.348 7 C -0.005 4.005 8 C -0.089 4.089 9 N -0.251 5.251 10 C -0.054 4.054 11 C 0.005 3.995 12 N -0.371 5.371 13 C -0.360 4.360 14 H 0.102 0.898 15 C -0.260 4.260 16 N -0.600 5.600 17 Si 0.810 3.190 18 H -0.201 1.201 19 H -0.218 1.218 20 H -0.203 1.203 21 C 0.051 3.949 22 C -0.079 4.079 23 C -0.001 4.001 24 C 0.036 3.964 25 H 0.077 0.923 26 C -0.183 4.183 27 C -0.187 4.187 28 C -0.042 4.042 29 O -0.309 6.309 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.119 0.881 48 H 0.114 0.886 49 H 0.093 0.907 50 H 0.123 0.877 51 H 0.099 0.901 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.673 -10.471 -24.322 27.569 hybrid contribution 1.165 0.643 0.799 1.552 sum -6.508 -9.827 -23.523 26.311 Atomic orbital electron populations 1.21729 0.90887 1.02827 1.03921 1.21857 0.99576 1.01048 0.91474 0.85457 1.21188 0.77151 0.86344 0.84997 1.90696 1.47979 1.20526 1.86008 1.48330 1.66905 1.12904 1.06678 1.22050 0.97639 0.78740 1.02040 1.22532 0.98391 0.98902 0.89083 1.62059 1.46092 1.02111 1.14863 1.23472 0.94193 0.95916 0.91854 1.22510 0.98613 0.88514 0.89878 1.45746 1.53833 1.09773 1.27700 1.19270 1.22300 0.94061 1.00375 0.89758 1.25683 1.00626 0.97486 1.02210 1.70011 1.39977 1.10452 1.39533 0.85095 0.78021 0.77066 0.78788 1.20101 1.21819 1.20350 1.21891 0.92172 0.95663 0.85179 1.22389 0.95621 0.89376 1.00519 1.21580 0.98254 0.95419 0.84848 1.22543 0.96560 0.83186 0.94111 0.92297 1.23267 1.03829 0.98348 0.92871 1.23246 1.02155 0.95135 0.98152 1.23608 0.95284 1.00426 0.84832 1.88626 1.66288 1.32501 1.43444 0.93223 0.91400 0.88718 0.89741 0.86310 0.89099 0.94607 0.92021 0.93582 0.93352 0.94123 0.96089 0.94512 0.95286 0.89253 0.90453 0.89921 0.88099 0.88609 0.90673 0.87745 0.90061 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.57 71.98 0.62 -1.13 16 2 C -0.12 -1.91 1.71 -11.54 -0.02 -1.93 16 3 H 0.13 1.33 6.45 -2.39 -0.02 1.32 16 4 C 0.51 12.75 6.85 87.65 0.60 13.35 16 5 O -0.57 -19.49 14.84 13.87 0.21 -19.28 16 6 N -0.61 -13.98 3.01 -817.95 -2.46 -16.44 16 7 C 0.12 2.11 5.67 86.35 0.49 2.60 16 8 C 0.04 0.93 5.61 86.38 0.48 1.42 16 9 N -0.53 -15.48 4.62 -869.30 -4.01 -19.50 16 10 C 0.05 2.04 3.53 45.39 0.16 2.20 16 11 C 0.13 5.35 7.13 83.18 0.59 5.94 16 12 N -0.64 -33.83 3.78 -738.54 -2.79 -36.62 16 13 C -0.23 -13.23 10.75 84.03 0.90 -12.33 16 14 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 15 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 16 N -0.95 -57.52 11.51 21.65 0.25 -57.27 16 17 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 C 0.18 8.44 7.21 83.18 0.60 9.04 16 22 C 0.05 1.31 5.46 86.38 0.47 1.79 16 23 C 0.12 3.04 6.61 86.35 0.57 3.61 16 24 C 0.09 1.66 2.82 31.06 0.09 1.75 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 26 C -0.15 -1.34 6.36 31.85 0.20 -1.14 16 27 C -0.15 -1.36 7.16 32.05 0.23 -1.13 16 28 C 0.03 0.50 7.58 72.65 0.55 1.05 16 29 O -0.39 -8.98 9.01 -132.08 -1.19 -10.17 16 30 H 0.05 0.86 7.08 -2.39 -0.02 0.84 16 31 H 0.07 0.83 7.34 -2.39 -0.02 0.81 16 32 H 0.09 0.68 6.54 -2.39 -0.02 0.66 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.12 1.34 5.51 -2.39 -0.01 1.33 16 35 H 0.09 2.20 8.11 -2.39 -0.02 2.18 16 36 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 2.36 8.13 -2.39 -0.02 2.34 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 40 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.04 1.96 7.12 -2.39 -0.02 1.94 16 43 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 2.35 6.82 -2.39 -0.02 2.33 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 2.24 7.04 -2.39 -0.02 2.22 16 47 H 0.10 0.58 6.15 -2.39 -0.01 0.56 16 48 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.07 0.80 8.01 -2.39 -0.02 0.78 16 Total: -1.00 -76.45 394.08 -0.08 -76.53 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.89 Total: 13.26 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 7.01 Total: 21.71 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -9.02 Total: -129.83 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.98 Total: -29.46 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -76.45 -0.08 -76.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941555181.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.930 kcal (2) G-P(sol) polarization free energy of solvation -76.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds