Wall clock time and date at job start Tue Mar 31 2020 20:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47195 * 119.99847 * 2 1 3 5 5 C 1.50697 * 109.47376 * 184.99867 * 4 2 1 6 6 O 1.21276 * 119.99965 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00213 * 179.97438 * 5 4 2 8 8 C 1.47426 * 125.64479 * 0.02562 * 7 5 4 9 9 C 1.54911 * 104.83089 * 204.08984 * 8 7 5 10 10 C 1.55160 * 101.58385 * 322.99187 * 9 8 7 11 11 H 1.09003 * 110.72197 * 277.14150 * 10 9 8 12 12 N 1.46493 * 110.71948 * 154.03965 * 10 9 8 13 13 C 1.46503 * 120.00434 * 301.45531 * 12 10 9 14 14 C 1.36940 * 119.99811 * 121.45580 * 12 10 9 15 15 H 1.08002 * 120.00089 * 23.49314 * 14 12 10 16 16 C 1.38819 * 119.99706 * 203.48751 * 14 12 10 17 17 N 1.31614 * 120.00337 * 15.10776 * 16 14 12 18 18 Si 1.86803 * 119.99523 * 195.10364 * 16 14 12 19 19 H 1.48500 * 109.47239 * 60.00059 * 18 16 14 20 20 H 1.48501 * 109.46718 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47036 * 299.99965 * 18 16 14 22 22 C 1.47019 * 125.64939 * 179.71918 * 7 5 4 23 23 N 1.46498 * 109.47515 * 239.99679 * 2 1 3 24 24 C 1.45756 * 117.94704 * 119.73512 * 23 2 1 25 25 C 1.53105 * 110.38308 * 160.74807 * 24 23 2 26 26 C 1.53343 * 108.52768 * 51.12021 * 25 24 23 27 27 C 1.53074 * 108.42533 * 292.30571 * 26 25 24 28 28 C 1.33357 * 117.94687 * 300.00451 * 23 2 1 29 29 O 1.21279 * 118.24462 * 2.19833 * 28 23 2 30 30 H 1.09006 * 109.46981 * 60.00260 * 1 2 3 31 31 H 1.08999 * 109.47625 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47226 * 300.00034 * 1 2 3 33 33 H 1.09006 * 109.47069 * 305.00220 * 4 2 1 34 34 H 1.09002 * 109.47066 * 64.99892 * 4 2 1 35 35 H 1.08997 * 110.37199 * 322.92969 * 8 7 5 36 36 H 1.09004 * 110.36406 * 85.14988 * 8 7 5 37 37 H 1.08995 * 111.00394 * 81.06944 * 9 8 7 38 38 H 1.09003 * 111.00317 * 204.88370 * 9 8 7 39 39 H 1.09006 * 109.46869 * 95.21271 * 13 12 10 40 40 H 1.08999 * 109.47469 * 215.20830 * 13 12 10 41 41 H 1.09002 * 109.46786 * 335.21796 * 13 12 10 42 42 H 0.97002 * 119.99661 * 180.02562 * 17 16 14 43 43 H 1.08994 * 109.88262 * 298.39309 * 22 7 5 44 44 H 1.08992 * 109.88277 * 59.56109 * 22 7 5 45 45 H 1.08997 * 109.30030 * 281.24064 * 24 23 2 46 46 H 1.08996 * 109.29664 * 40.62152 * 24 23 2 47 47 H 1.09002 * 109.80742 * 291.32660 * 25 24 23 48 48 H 1.09001 * 109.67744 * 170.83053 * 25 24 23 49 49 H 1.09006 * 109.67320 * 172.57551 * 26 25 24 50 50 H 1.08995 * 109.67792 * 52.03799 * 26 25 24 51 51 H 1.09003 * 109.40212 * 288.77860 * 27 26 25 52 52 H 1.08997 * 109.40451 * 169.03146 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 8 4.1449 -0.0204 0.4446 7 7 4.2148 -1.1796 2.3349 8 6 3.6105 -1.9275 3.4525 9 6 4.6393 -1.8176 4.6053 10 6 5.9826 -1.9011 3.8332 11 1 6.2481 -2.9390 3.6323 12 7 7.0508 -1.2294 4.5774 13 6 6.9224 0.1882 4.9244 14 6 8.1694 -1.9266 4.9488 15 1 8.4577 -2.8142 4.4053 16 6 8.9328 -1.4922 6.0238 17 7 8.4419 -0.6065 6.8644 18 14 10.6570 -2.1650 6.2771 19 1 11.4922 -1.8456 5.0916 20 1 11.2566 -1.5468 7.4869 21 1 10.5924 -3.6380 6.4547 22 6 5.6735 -1.1573 2.5166 23 7 2.0184 -0.6906 -1.1961 24 6 2.8482 0.0620 -2.1285 25 6 3.6413 -0.8917 -3.0260 26 6 2.6684 -1.9062 -3.6389 27 6 2.1400 -2.8069 -2.5196 28 6 1.6713 -1.9670 -1.3663 29 8 0.9382 -2.4768 -0.5456 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 2.6635 -1.4737 3.7446 36 1 3.4605 -2.9706 3.1738 37 1 4.5451 -0.8634 5.1234 38 1 4.5360 -2.6498 5.3017 39 1 6.5213 0.2802 5.9337 40 1 7.9020 0.6638 4.8779 41 1 6.2482 0.6750 4.2197 42 1 8.9756 -0.3028 7.6154 43 1 6.1590 -1.6615 1.6811 44 1 6.0229 -0.1271 2.5842 45 1 2.2122 0.6973 -2.7449 46 1 3.5427 0.6879 -1.5682 47 1 4.3925 -1.4159 -2.4353 48 1 4.1295 -0.3272 -3.8205 49 1 3.1886 -2.5110 -4.3817 50 1 1.8379 -1.3803 -4.1095 51 1 2.9359 -3.4715 -2.1834 52 1 1.3080 -3.4019 -2.8959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971532689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:07 Heat of formation + Delta-G solvation = -42.756837 kcal Electronic energy + Delta-G solvation = -31123.985846 eV Core-core repulsion = 27124.199652 eV Total energy + Delta-G solvation = -3999.786194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.02191 -39.52669 -37.46282 -36.51390 -35.34114 -34.75082 -31.86848 -31.28996 -29.78785 -29.64244 -28.69086 -27.15317 -26.04121 -24.63919 -23.78143 -23.14611 -22.26777 -21.27613 -19.32018 -19.01726 -18.43868 -17.13633 -17.03265 -16.75168 -16.15861 -15.92671 -15.69932 -14.94638 -14.87547 -14.49910 -14.32078 -14.12750 -13.84575 -13.49461 -13.39705 -13.34518 -13.22240 -12.70358 -12.52194 -12.43487 -12.30275 -12.06063 -11.88991 -11.76217 -11.66725 -11.45351 -11.34288 -11.17928 -11.13497 -11.00513 -10.93852 -10.77322 -10.58354 -10.49470 -10.25650 -9.88705 -9.88122 -9.49720 -9.44979 -8.72836 -8.59086 -8.27699 -6.81715 -5.77855 -3.25004 2.56844 2.87961 2.94622 3.27119 3.36869 3.42576 3.44079 4.37276 4.45714 4.54510 4.56688 4.59945 4.65837 4.79924 5.06335 5.12275 5.14879 5.19757 5.25847 5.28995 5.36910 5.42414 5.47477 5.48538 5.56855 5.59662 5.61796 5.62336 5.66022 5.70047 5.79211 5.84270 5.89823 5.93063 6.02446 6.03895 6.14666 6.31006 6.41499 6.51332 6.59743 6.66462 6.78896 6.88582 7.30343 7.47289 7.67116 7.76051 7.85221 8.12088 8.33691 8.44140 9.17111 9.80009 10.29323 11.26821 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.002628 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.653176 B =10650.031835 C =11169.928729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.160 3.840 3 H 0.091 0.909 4 C -0.159 4.159 5 C 0.527 3.473 6 O -0.550 6.550 7 N -0.612 5.612 8 C 0.100 3.900 9 C -0.150 4.150 10 C 0.172 3.828 11 H 0.077 0.923 12 N -0.585 5.585 13 C 0.159 3.841 14 C -0.263 4.263 15 H 0.069 0.931 16 C 0.006 3.994 17 N -0.903 5.903 18 Si 0.906 3.094 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.089 3.911 23 N -0.583 5.583 24 C 0.114 3.886 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.135 4.135 28 C 0.516 3.484 29 O -0.558 6.558 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.003 0.997 42 H 0.254 0.746 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.096 0.904 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 0.189 -17.682 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.056 3.944 3 H 0.109 0.891 4 C -0.199 4.199 5 C 0.316 3.684 6 O -0.429 6.429 7 N -0.346 5.346 8 C -0.024 4.024 9 C -0.190 4.190 10 C 0.062 3.938 11 H 0.095 0.905 12 N -0.306 5.306 13 C 0.014 3.986 14 C -0.392 4.392 15 H 0.087 0.913 16 C -0.193 4.193 17 N -0.547 5.547 18 Si 0.735 3.265 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.035 4.035 23 N -0.314 5.314 24 C -0.009 4.009 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.175 4.175 28 C 0.305 3.695 29 O -0.438 6.438 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.115 0.885 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.761 0.382 -17.623 23.646 hybrid contribution 1.042 -0.283 0.349 1.134 sum -14.719 0.099 -17.274 22.695 Atomic orbital electron populations 1.22241 0.94337 1.04581 1.01642 1.20797 0.94095 0.96126 0.83342 0.89062 1.22179 0.92453 1.05822 0.99486 1.20260 0.89550 0.78219 0.80403 1.90584 1.70542 1.43394 1.38372 1.48526 1.08585 1.53745 1.23732 1.22362 0.97175 0.95801 0.87034 1.23373 0.96036 1.03049 0.96583 1.21298 0.87932 0.95584 0.88988 0.90497 1.43838 1.17016 1.06519 1.63184 1.20787 0.98320 0.83009 0.96443 1.19165 1.00527 1.09777 1.09750 0.91333 1.25014 0.99465 0.99407 0.95410 1.70063 1.35896 1.34275 1.14470 0.86327 0.84509 0.78475 0.77165 1.21006 1.21622 1.20857 1.22681 0.78798 1.02369 0.99669 1.47232 1.50012 1.11068 1.23090 1.21519 0.93671 0.94353 0.91325 1.21874 0.98239 0.97815 0.99261 1.21667 0.99411 0.97641 0.97362 1.21660 1.03095 0.98410 0.94341 1.20078 0.80274 0.81834 0.87345 1.90596 1.37492 1.70880 1.44841 0.92742 0.89593 0.91834 0.88512 0.86622 0.91404 0.91734 0.90666 0.90392 0.94817 0.94198 0.97887 0.93611 0.92457 0.91057 0.92527 0.88632 0.90708 0.90076 0.90801 0.91352 0.88527 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.08 37.15 0.34 -1.35 16 2 C 0.16 1.82 2.20 -67.93 -0.15 1.67 16 3 H 0.09 1.02 7.60 -51.93 -0.39 0.62 16 4 C -0.16 -1.99 4.01 -27.88 -0.11 -2.10 16 5 C 0.53 8.25 7.71 -10.99 -0.08 8.16 16 6 O -0.55 -9.64 13.59 5.56 0.08 -9.56 16 7 N -0.61 -9.93 3.33 -170.52 -0.57 -10.50 16 8 C 0.10 1.41 6.69 -2.53 -0.02 1.39 16 9 C -0.15 -2.56 6.65 -24.58 -0.16 -2.72 16 10 C 0.17 3.43 3.42 -66.09 -0.23 3.20 16 11 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 12 N -0.59 -14.29 2.93 -171.37 -0.50 -14.79 16 13 C 0.16 3.85 7.70 59.85 0.46 4.31 16 14 C -0.26 -7.07 9.59 -15.06 -0.14 -7.22 16 15 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 16 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 17 N -0.90 -25.88 10.86 55.49 0.60 -25.28 16 18 Si 0.91 21.55 29.58 -169.99 -5.03 16.52 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.09 1.66 6.41 -3.06 -0.02 1.64 16 23 N -0.58 -6.61 2.23 -167.27 -0.37 -6.98 16 24 C 0.11 1.11 5.74 -4.39 -0.03 1.08 16 25 C -0.13 -1.12 6.03 -26.50 -0.16 -1.28 16 26 C -0.12 -0.88 6.03 -26.52 -0.16 -1.04 16 27 C -0.14 -1.23 6.03 -28.10 -0.17 -1.40 16 28 C 0.52 6.25 6.86 -11.87 -0.08 6.17 16 29 O -0.56 -8.15 12.46 5.56 0.07 -8.08 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.02 5.84 -51.93 -0.30 0.72 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.04 7.85 -51.93 -0.41 0.63 16 34 H 0.12 1.59 5.89 -51.93 -0.31 1.29 16 35 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.39 7.28 -51.93 -0.38 1.02 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.03 0.88 7.32 -51.93 -0.38 0.50 16 40 H 0.04 1.04 7.43 -51.93 -0.39 0.66 16 41 H 0.00 0.06 6.30 -51.93 -0.33 -0.27 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.47 6.15 -51.93 -0.32 1.15 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 1.12 6.28 -51.93 -0.33 0.79 16 47 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 51 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -31.42 392.70 -9.56 -40.98 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -8.95 Total: 1.16 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -0.80 Total: 10.61 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.84 Total: -57.55 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.14 Total: -17.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.42 -9.56 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971532689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.777 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds