Wall clock time and date at job start Tue Mar 31 2020 20:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47195 * 119.99847 * 2 1 3 5 5 C 1.50697 * 109.47376 * 184.99867 * 4 2 1 6 6 O 1.21276 * 119.99965 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00213 * 179.97438 * 5 4 2 8 8 C 1.47426 * 125.64479 * 0.02562 * 7 5 4 9 9 C 1.54911 * 104.83089 * 204.08984 * 8 7 5 10 10 C 1.55160 * 101.58385 * 322.99187 * 9 8 7 11 11 H 1.09003 * 110.72197 * 277.14150 * 10 9 8 12 12 N 1.46493 * 110.71948 * 154.03965 * 10 9 8 13 13 C 1.46503 * 120.00434 * 301.45531 * 12 10 9 14 14 C 1.36940 * 119.99811 * 121.45580 * 12 10 9 15 15 H 1.08002 * 120.00089 * 23.49314 * 14 12 10 16 16 C 1.38819 * 119.99706 * 203.48751 * 14 12 10 17 17 N 1.31614 * 120.00337 * 15.10776 * 16 14 12 18 18 Si 1.86803 * 119.99523 * 195.10364 * 16 14 12 19 19 H 1.48500 * 109.47239 * 60.00059 * 18 16 14 20 20 H 1.48501 * 109.46718 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47036 * 299.99965 * 18 16 14 22 22 C 1.47019 * 125.64939 * 179.71918 * 7 5 4 23 23 N 1.46498 * 109.47515 * 239.99679 * 2 1 3 24 24 C 1.45756 * 117.94704 * 119.73512 * 23 2 1 25 25 C 1.53105 * 110.38308 * 160.74807 * 24 23 2 26 26 C 1.53343 * 108.52768 * 51.12021 * 25 24 23 27 27 C 1.53074 * 108.42533 * 292.30571 * 26 25 24 28 28 C 1.33357 * 117.94687 * 300.00451 * 23 2 1 29 29 O 1.21279 * 118.24462 * 2.19833 * 28 23 2 30 30 H 1.09006 * 109.46981 * 60.00260 * 1 2 3 31 31 H 1.08999 * 109.47625 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47226 * 300.00034 * 1 2 3 33 33 H 1.09006 * 109.47069 * 305.00220 * 4 2 1 34 34 H 1.09002 * 109.47066 * 64.99892 * 4 2 1 35 35 H 1.08997 * 110.37199 * 322.92969 * 8 7 5 36 36 H 1.09004 * 110.36406 * 85.14988 * 8 7 5 37 37 H 1.08995 * 111.00394 * 81.06944 * 9 8 7 38 38 H 1.09003 * 111.00317 * 204.88370 * 9 8 7 39 39 H 1.09006 * 109.46869 * 95.21271 * 13 12 10 40 40 H 1.08999 * 109.47469 * 215.20830 * 13 12 10 41 41 H 1.09002 * 109.46786 * 335.21796 * 13 12 10 42 42 H 0.97002 * 119.99661 * 180.02562 * 17 16 14 43 43 H 1.08994 * 109.88262 * 298.39309 * 22 7 5 44 44 H 1.08992 * 109.88277 * 59.56109 * 22 7 5 45 45 H 1.08997 * 109.30030 * 281.24064 * 24 23 2 46 46 H 1.08996 * 109.29664 * 40.62152 * 24 23 2 47 47 H 1.09002 * 109.80742 * 291.32660 * 25 24 23 48 48 H 1.09001 * 109.67744 * 170.83053 * 25 24 23 49 49 H 1.09006 * 109.67320 * 172.57551 * 26 25 24 50 50 H 1.08995 * 109.67792 * 52.03799 * 26 25 24 51 51 H 1.09003 * 109.40212 * 288.77860 * 27 26 25 52 52 H 1.08997 * 109.40451 * 169.03146 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 8 4.1449 -0.0204 0.4446 7 7 4.2148 -1.1796 2.3349 8 6 3.6105 -1.9275 3.4525 9 6 4.6393 -1.8176 4.6053 10 6 5.9826 -1.9011 3.8332 11 1 6.2481 -2.9390 3.6323 12 7 7.0508 -1.2294 4.5774 13 6 6.9224 0.1882 4.9244 14 6 8.1694 -1.9266 4.9488 15 1 8.4577 -2.8142 4.4053 16 6 8.9328 -1.4922 6.0238 17 7 8.4419 -0.6065 6.8644 18 14 10.6570 -2.1650 6.2771 19 1 11.4922 -1.8456 5.0916 20 1 11.2566 -1.5468 7.4869 21 1 10.5924 -3.6380 6.4547 22 6 5.6735 -1.1573 2.5166 23 7 2.0184 -0.6906 -1.1961 24 6 2.8482 0.0620 -2.1285 25 6 3.6413 -0.8917 -3.0260 26 6 2.6684 -1.9062 -3.6389 27 6 2.1400 -2.8069 -2.5196 28 6 1.6713 -1.9670 -1.3663 29 8 0.9382 -2.4768 -0.5456 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 2.6635 -1.4737 3.7446 36 1 3.4605 -2.9706 3.1738 37 1 4.5451 -0.8634 5.1234 38 1 4.5360 -2.6498 5.3017 39 1 6.5213 0.2802 5.9337 40 1 7.9020 0.6638 4.8779 41 1 6.2482 0.6750 4.2197 42 1 8.9756 -0.3028 7.6154 43 1 6.1590 -1.6615 1.6811 44 1 6.0229 -0.1271 2.5842 45 1 2.2122 0.6973 -2.7449 46 1 3.5427 0.6879 -1.5682 47 1 4.3925 -1.4159 -2.4353 48 1 4.1295 -0.3272 -3.8205 49 1 3.1886 -2.5110 -4.3817 50 1 1.8379 -1.3803 -4.1095 51 1 2.9359 -3.4715 -2.1834 52 1 1.3080 -3.4019 -2.8959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971532689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:06 Heat of formation + Delta-G solvation = -60.495174 kcal Electronic energy + Delta-G solvation = -31124.755038 eV Core-core repulsion = 27124.199652 eV Total energy + Delta-G solvation = -4000.555386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.95581 -40.80156 -38.90324 -37.36580 -36.55440 -36.16524 -33.52765 -32.34484 -31.30494 -30.43775 -29.93773 -28.44015 -28.05912 -25.39760 -25.20947 -24.18298 -23.75945 -22.13238 -20.92012 -20.26424 -19.27739 -18.96080 -18.15254 -17.88930 -17.50270 -17.03627 -16.74067 -16.42837 -16.00848 -15.82378 -15.29993 -15.16963 -15.00563 -14.88018 -14.70507 -14.45391 -14.28854 -14.14499 -14.07057 -13.62687 -13.30174 -13.10063 -13.01443 -12.91248 -12.87252 -12.78309 -12.60633 -12.52996 -12.40449 -12.36453 -12.27538 -12.10617 -11.84965 -11.83516 -11.80014 -11.71194 -11.50005 -10.78473 -10.64044 -10.33852 -9.63507 -9.59738 -8.82504 -7.85879 -5.35063 1.46651 1.49408 1.55630 1.63411 1.69643 1.98069 2.12170 2.50384 3.26255 3.48831 3.55376 3.60254 3.81716 3.86820 3.90132 3.93945 3.94796 4.05212 4.23151 4.26166 4.29984 4.38663 4.43226 4.49593 4.54008 4.57782 4.64293 4.71633 4.73417 4.79472 4.81813 4.89608 4.94198 4.95112 4.97700 4.98430 5.05551 5.13540 5.16981 5.24239 5.31415 5.34760 5.36430 5.37896 5.62128 5.65077 5.66608 6.29348 6.57257 6.62903 7.10443 7.17153 7.23805 7.81183 8.26637 9.17311 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.002628 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.653176 B =10650.031835 C =11169.928729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.092 0.908 4 C -0.148 4.148 5 C 0.522 3.478 6 O -0.571 6.571 7 N -0.616 5.616 8 C 0.109 3.891 9 C -0.140 4.140 10 C 0.165 3.835 11 H 0.078 0.922 12 N -0.601 5.601 13 C 0.180 3.820 14 C -0.272 4.272 15 H 0.072 0.928 16 C -0.047 4.047 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.273 1.273 22 C 0.104 3.896 23 N -0.584 5.584 24 C 0.112 3.888 25 C -0.132 4.132 26 C -0.114 4.114 27 C -0.135 4.135 28 C 0.505 3.495 29 O -0.587 6.587 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.023 0.977 42 H 0.249 0.751 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.093 0.907 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 -0.411 -19.269 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.110 0.890 4 C -0.188 4.188 5 C 0.313 3.687 6 O -0.451 6.451 7 N -0.350 5.350 8 C -0.014 4.014 9 C -0.180 4.180 10 C 0.057 3.943 11 H 0.096 0.904 12 N -0.322 5.322 13 C 0.035 3.965 14 C -0.402 4.402 15 H 0.090 0.910 16 C -0.243 4.243 17 N -0.579 5.579 18 Si 0.796 3.204 19 H -0.207 1.207 20 H -0.221 1.221 21 H -0.198 1.198 22 C -0.021 4.021 23 N -0.315 5.315 24 C -0.010 4.010 25 C -0.169 4.169 26 C -0.151 4.151 27 C -0.175 4.175 28 C 0.295 3.705 29 O -0.470 6.470 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.119 0.881 49 H 0.111 0.889 50 H 0.099 0.901 51 H 0.111 0.889 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.216 -0.231 -19.246 25.823 hybrid contribution 1.465 -0.078 0.779 1.661 sum -15.751 -0.310 -18.467 24.274 Atomic orbital electron populations 1.22133 0.92962 1.03694 1.02918 1.20905 0.95103 0.95948 0.83008 0.88966 1.22164 0.89706 1.05753 1.01214 1.20897 0.90803 0.77377 0.79672 1.90585 1.71278 1.44184 1.39096 1.48609 1.07426 1.54322 1.24669 1.22421 0.97112 0.96914 0.84905 1.23198 0.95009 1.02525 0.97310 1.21453 0.88237 0.95277 0.89379 0.90430 1.43989 1.18009 1.06604 1.63607 1.20445 0.96877 0.83431 0.95749 1.19510 1.01526 1.09731 1.09421 0.90995 1.25759 1.02876 1.00154 0.95467 1.70214 1.36939 1.35781 1.14966 0.85332 0.80194 0.78179 0.76670 1.20733 1.22053 1.19831 1.22269 0.80731 1.00482 0.98608 1.47362 1.49763 1.11121 1.23244 1.21601 0.93642 0.94557 0.91234 1.21859 0.97879 0.97939 0.99248 1.21638 0.99489 0.97159 0.96842 1.21701 1.03391 0.98366 0.93995 1.20629 0.79910 0.82071 0.87847 1.90578 1.38900 1.71462 1.46073 0.91884 0.91406 0.90188 0.86281 0.87346 0.88443 0.89999 0.92186 0.89710 0.97031 0.97022 0.95830 0.94155 0.93120 0.93369 0.90254 0.90899 0.93202 0.88120 0.88935 0.90127 0.88864 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.08 71.98 0.65 -2.18 16 2 C 0.15 3.26 2.20 44.99 0.10 3.36 16 3 H 0.09 1.93 7.60 -2.39 -0.02 1.91 16 4 C -0.15 -3.45 4.01 29.85 0.12 -3.33 16 5 C 0.52 15.79 7.71 87.66 0.68 16.46 16 6 O -0.57 -19.88 13.59 -3.02 -0.04 -19.92 16 7 N -0.62 -19.27 3.33 -811.79 -2.70 -21.97 16 8 C 0.11 2.83 6.69 86.86 0.58 3.41 16 9 C -0.14 -4.63 6.65 31.99 0.21 -4.42 16 10 C 0.17 6.54 3.42 46.19 0.16 6.70 16 11 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 12 N -0.60 -29.76 2.93 -696.09 -2.04 -31.80 16 13 C 0.18 8.97 7.70 127.77 0.98 9.95 16 14 C -0.27 -14.78 9.59 84.03 0.81 -13.97 16 15 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 16 C -0.05 -2.59 5.06 84.86 0.43 -2.16 16 17 N -0.93 -54.69 10.86 21.65 0.24 -54.45 16 18 Si 0.97 44.69 29.58 68.60 2.03 46.72 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.10 3.88 6.41 86.74 0.56 4.44 16 23 N -0.58 -12.53 2.23 -802.30 -1.79 -14.32 16 24 C 0.11 2.03 5.74 86.55 0.50 2.53 16 25 C -0.13 -2.00 6.03 30.74 0.19 -1.82 16 26 C -0.11 -1.34 6.03 30.73 0.19 -1.16 16 27 C -0.13 -2.24 6.03 29.71 0.18 -2.06 16 28 C 0.51 11.67 6.86 87.71 0.60 12.27 16 29 O -0.59 -16.63 12.46 -3.03 -0.04 -16.67 16 30 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.51 5.84 -2.39 -0.01 1.49 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.12 2.22 7.85 -2.38 -0.02 2.20 16 34 H 0.11 2.80 5.89 -2.39 -0.01 2.79 16 35 H 0.10 2.02 7.48 -2.39 -0.02 2.00 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 2.18 7.28 -2.39 -0.02 2.16 16 38 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.01 0.62 7.32 -2.38 -0.02 0.60 16 40 H 0.01 0.61 7.43 -2.39 -0.02 0.59 16 41 H 0.02 1.05 6.30 -2.39 -0.02 1.03 16 42 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 2.01 6.15 -2.39 -0.01 2.00 16 45 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.68 6.28 -2.39 -0.02 1.67 16 47 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 48 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 51 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.14 392.70 3.47 -65.67 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.90 Total: 18.71 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 6.92 Total: 28.03 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -6.30 Total: -122.54 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.08 Total: -36.59 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.14 3.47 -65.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971532689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.171 kcal (2) G-P(sol) polarization free energy of solvation -69.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds