Wall clock time and date at job start Tue Mar 31 2020 20:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46835 * 2 1 4 4 C 1.52999 * 109.46948 * 119.99533 * 2 1 3 5 5 C 1.50706 * 109.46985 * 185.00305 * 4 2 1 6 6 O 1.21277 * 120.00072 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99737 * 180.02562 * 5 4 2 8 8 C 1.47425 * 125.65177 * 359.68664 * 7 5 4 9 9 C 1.55126 * 104.72218 * 155.81989 * 8 7 5 10 10 C 1.55161 * 101.48654 * 37.29730 * 9 8 7 11 11 H 1.08995 * 110.71875 * 82.69443 * 10 9 8 12 12 N 1.46501 * 110.87155 * 205.90107 * 10 9 8 13 13 C 1.46500 * 120.00282 * 53.60754 * 12 10 9 14 14 C 1.36941 * 119.99610 * 233.61392 * 12 10 9 15 15 H 1.07997 * 120.00287 * 21.71556 * 14 12 10 16 16 C 1.38810 * 119.99530 * 201.71972 * 14 12 10 17 17 N 1.31620 * 120.00313 * 13.65258 * 16 14 12 18 18 Si 1.86799 * 120.00044 * 193.64698 * 16 14 12 19 19 H 1.48501 * 109.46879 * 59.99979 * 18 16 14 20 20 H 1.48503 * 109.47506 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47133 * 300.00430 * 18 16 14 22 22 C 1.47024 * 125.64653 * 179.97438 * 7 5 4 23 23 N 1.46491 * 109.47295 * 239.99729 * 2 1 3 24 24 C 1.45760 * 117.95026 * 119.99701 * 23 2 1 25 25 C 1.52919 * 110.48847 * 160.92569 * 24 23 2 26 26 C 1.53340 * 108.67677 * 50.75514 * 25 24 23 27 27 C 1.53070 * 108.42602 * 292.47091 * 26 25 24 28 28 C 1.33234 * 117.98186 * 300.07346 * 23 2 1 29 29 O 1.21276 * 118.16278 * 2.21262 * 28 23 2 30 30 H 1.09005 * 109.47194 * 60.00256 * 1 2 3 31 31 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47392 * 300.00602 * 1 2 3 33 33 H 1.08997 * 109.47475 * 304.99724 * 4 2 1 34 34 H 1.08997 * 109.47246 * 65.00071 * 4 2 1 35 35 H 1.09000 * 110.36779 * 274.75028 * 8 7 5 36 36 H 1.09001 * 110.36168 * 37.07224 * 8 7 5 37 37 H 1.09005 * 111.19222 * 279.19249 * 9 8 7 38 38 H 1.08995 * 110.90682 * 155.27704 * 9 8 7 39 39 H 1.08992 * 109.47084 * 94.45862 * 13 12 10 40 40 H 1.09003 * 109.47320 * 214.46250 * 13 12 10 41 41 H 1.09001 * 109.47069 * 334.45980 * 13 12 10 42 42 H 0.96998 * 120.00050 * 180.02562 * 17 16 14 43 43 H 1.09008 * 109.88020 * 300.43993 * 22 7 5 44 44 H 1.08995 * 109.88378 * 61.59953 * 22 7 5 45 45 H 1.08998 * 109.29704 * 40.61367 * 24 23 2 46 46 H 1.09001 * 109.13430 * 281.13389 * 24 23 2 47 47 H 1.09001 * 109.60149 * 290.99936 * 25 24 23 48 48 H 1.08996 * 109.73724 * 170.59438 * 25 24 23 49 49 H 1.09000 * 109.67936 * 172.73307 * 26 25 24 50 50 H 1.09001 * 109.70317 * 52.21982 * 26 25 24 51 51 H 1.08999 * 109.40336 * 169.02691 * 27 26 25 52 52 H 1.09006 * 109.40117 * 288.85672 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6147 1.3128 6 8 4.1451 -0.0210 0.4442 7 7 4.2149 -1.1803 2.3344 8 6 3.6102 -1.9231 3.4551 9 6 4.7399 -2.8561 3.9648 10 6 5.9871 -1.9471 3.8047 11 1 6.0874 -1.2761 4.6577 12 7 7.2002 -2.7507 3.6342 13 6 7.2604 -3.7730 2.5867 14 6 8.2777 -2.5462 4.4542 15 1 8.1423 -2.0750 5.4165 16 6 9.5440 -2.9444 4.0484 17 7 9.7612 -3.2665 2.7909 18 14 10.9400 -3.0231 5.2871 19 1 10.5910 -3.9819 6.3660 20 1 12.1809 -3.4731 4.6067 21 1 11.1581 -1.6762 5.8733 22 6 5.6732 -1.1534 2.5190 23 7 2.0184 -0.6906 -1.1960 24 6 2.8530 0.0603 -2.1256 25 6 3.6413 -0.8916 -3.0261 26 6 2.6686 -1.9063 -3.6388 27 6 2.1402 -2.8069 -2.5195 28 6 1.6709 -1.9654 -1.3675 29 8 0.9366 -2.4738 -0.5471 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6054 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.2988 -1.2358 4.2417 36 1 2.7615 -2.5113 3.1062 37 1 4.8243 -3.7482 3.3442 38 1 4.5823 -3.1226 5.0099 39 1 7.7178 -3.3502 1.6922 40 1 7.8566 -4.6162 2.9357 41 1 6.2517 -4.1134 2.3527 42 1 10.6460 -3.5451 2.5074 43 1 6.1636 -1.6213 1.6652 44 1 6.0144 -0.1239 2.6265 45 1 3.5486 0.6829 -1.5629 46 1 2.2180 0.6964 -2.7422 47 1 4.3925 -1.4159 -2.4353 48 1 4.1295 -0.3272 -3.8205 49 1 3.1887 -2.5111 -4.3817 50 1 1.8379 -1.3809 -4.1100 51 1 1.3081 -3.4019 -2.8958 52 1 2.9366 -3.4705 -2.1823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971532691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:14 Heat of formation + Delta-G solvation = -41.159659 kcal Electronic energy + Delta-G solvation = -31361.081471 eV Core-core repulsion = 27361.364537 eV Total energy + Delta-G solvation = -3999.716935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.97937 -39.47874 -37.44214 -36.45087 -35.29450 -34.74491 -31.85429 -31.26868 -29.71899 -29.57858 -28.67402 -27.14462 -26.03730 -24.57327 -23.73567 -23.07954 -22.34333 -21.21444 -19.27812 -18.98725 -18.38375 -17.13351 -16.96998 -16.73147 -16.09524 -15.77954 -15.68153 -15.07280 -14.83016 -14.44013 -14.30034 -14.06778 -13.82233 -13.40930 -13.36385 -13.24174 -13.16671 -12.79576 -12.54551 -12.30273 -12.18726 -11.93976 -11.88733 -11.78849 -11.70112 -11.54964 -11.34900 -11.10160 -11.05245 -10.91359 -10.90124 -10.79432 -10.56566 -10.44321 -10.29454 -9.88829 -9.82320 -9.44589 -9.39111 -8.67739 -8.57923 -8.23605 -6.83561 -5.76968 -3.23472 2.63348 2.92687 3.00488 3.31143 3.37201 3.42633 3.43703 4.43190 4.45999 4.62420 4.64696 4.66593 4.70445 4.83646 5.03701 5.13089 5.19103 5.27553 5.28881 5.32077 5.38220 5.44392 5.50798 5.54203 5.56139 5.61501 5.65650 5.69874 5.71380 5.74784 5.82402 5.89449 5.91860 5.96066 6.03102 6.11485 6.17384 6.35244 6.39212 6.54616 6.58019 6.70931 6.83692 6.88365 7.33763 7.52874 7.69393 7.76772 7.90154 8.18090 8.33381 8.49457 9.17742 9.80495 10.29182 11.27631 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.002918 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.165404 B = 9592.481886 C =10314.018565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.159 4.159 5 C 0.525 3.475 6 O -0.548 6.548 7 N -0.613 5.613 8 C 0.101 3.899 9 C -0.153 4.153 10 C 0.172 3.828 11 H 0.077 0.923 12 N -0.586 5.586 13 C 0.161 3.839 14 C -0.262 4.262 15 H 0.070 0.930 16 C 0.005 3.995 17 N -0.905 5.905 18 Si 0.907 3.093 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.089 3.911 23 N -0.583 5.583 24 C 0.114 3.886 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.136 4.136 28 C 0.516 3.484 29 O -0.559 6.559 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.045 0.955 41 H 0.001 0.999 42 H 0.254 0.746 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.067 0.933 51 H 0.096 0.904 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.579 5.046 -9.143 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.199 4.199 5 C 0.314 3.686 6 O -0.427 6.427 7 N -0.347 5.347 8 C -0.022 4.022 9 C -0.193 4.193 10 C 0.062 3.938 11 H 0.095 0.905 12 N -0.306 5.306 13 C 0.017 3.983 14 C -0.392 4.392 15 H 0.088 0.912 16 C -0.194 4.194 17 N -0.549 5.549 18 Si 0.737 3.263 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.036 4.036 23 N -0.314 5.314 24 C -0.008 4.008 25 C -0.173 4.173 26 C -0.160 4.160 27 C -0.175 4.175 28 C 0.305 3.695 29 O -0.440 6.440 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.020 0.980 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.115 0.885 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.436 5.055 -9.357 21.284 hybrid contribution 0.997 -0.006 0.578 1.152 sum -17.439 5.048 -8.780 20.167 Atomic orbital electron populations 1.22243 0.94375 1.04597 1.01560 1.20786 0.94055 0.96089 0.83412 0.89122 1.22182 0.92539 1.05791 0.99432 1.20275 0.89501 0.78364 0.80470 1.90591 1.70515 1.43437 1.38146 1.48585 1.08804 1.53816 1.23521 1.22359 0.96921 0.94274 0.88693 1.23371 0.95471 0.99050 1.01402 1.21350 0.86893 0.91319 0.94247 0.90474 1.43912 1.11332 1.37246 1.38105 1.20788 0.94257 0.91464 0.91785 1.19196 0.85550 1.37850 0.96581 0.91192 1.25026 0.97253 1.01363 0.95773 1.70075 1.21553 1.49363 1.13879 0.86301 0.81509 0.77998 0.80502 1.21011 1.21618 1.20884 1.22871 0.78338 1.00850 1.01515 1.47202 1.49803 1.11181 1.23181 1.21496 0.93598 0.94398 0.91339 1.21847 0.98332 0.97863 0.99274 1.21657 0.99356 0.97635 0.97379 1.21668 1.03122 0.98420 0.94329 1.20060 0.80239 0.81804 0.87350 1.90586 1.37577 1.70955 1.44848 0.92757 0.89561 0.91920 0.88651 0.86631 0.91687 0.91308 0.90438 0.90463 0.95256 0.93651 0.98028 0.93584 0.91175 0.92466 0.88596 0.92618 0.90585 0.90040 0.90756 0.91420 0.88540 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.08 37.16 0.34 -1.37 16 2 C 0.16 1.87 2.20 -67.94 -0.15 1.72 16 3 H 0.09 1.03 7.60 -51.93 -0.39 0.63 16 4 C -0.16 -2.03 4.01 -27.88 -0.11 -2.14 16 5 C 0.53 8.49 7.71 -10.98 -0.08 8.41 16 6 O -0.55 -10.06 13.56 5.56 0.08 -9.99 16 7 N -0.61 -10.19 3.32 -170.38 -0.57 -10.76 16 8 C 0.10 1.39 6.70 -2.41 -0.02 1.38 16 9 C -0.15 -2.48 6.61 -24.46 -0.16 -2.64 16 10 C 0.17 3.43 3.43 -66.10 -0.23 3.20 16 11 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 12 N -0.59 -14.34 2.93 -171.39 -0.50 -14.85 16 13 C 0.16 3.95 7.82 59.85 0.47 4.42 16 14 C -0.26 -7.06 9.63 -15.06 -0.14 -7.21 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 17 N -0.90 -26.16 10.67 55.49 0.59 -25.57 16 18 Si 0.91 21.57 29.57 -169.99 -5.03 16.55 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.09 1.75 6.51 -3.07 -0.02 1.73 16 23 N -0.58 -7.03 2.23 -167.41 -0.37 -7.40 16 24 C 0.11 1.21 5.73 -4.48 -0.03 1.18 16 25 C -0.14 -1.30 6.02 -26.60 -0.16 -1.46 16 26 C -0.12 -1.01 6.03 -26.52 -0.16 -1.17 16 27 C -0.14 -1.38 6.04 -28.10 -0.17 -1.55 16 28 C 0.52 6.71 6.86 -11.92 -0.08 6.62 16 29 O -0.56 -8.55 12.45 5.56 0.07 -8.48 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.05 5.84 -51.93 -0.30 0.74 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.12 1.65 5.61 -51.93 -0.29 1.35 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.85 7.48 -51.93 -0.39 0.47 16 37 H 0.08 1.36 6.07 -51.93 -0.32 1.04 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.03 0.79 7.33 -51.93 -0.38 0.41 16 40 H 0.04 1.19 7.23 -51.93 -0.38 0.82 16 41 H 0.00 0.03 6.04 -51.93 -0.31 -0.28 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.07 1.60 7.11 -51.92 -0.37 1.23 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.10 1.20 6.26 -51.93 -0.32 0.88 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 51 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -31.79 391.95 -9.53 -41.32 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.91 Total: 2.09 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -0.80 Total: 11.18 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.85 Total: -58.57 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.14 Total: -18.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.79 -9.53 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971532691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.160 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds