Wall clock time and date at job start Tue Mar 31 2020 20:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46835 * 2 1 4 4 C 1.52999 * 109.46948 * 119.99533 * 2 1 3 5 5 C 1.50706 * 109.46985 * 185.00305 * 4 2 1 6 6 O 1.21277 * 120.00072 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99737 * 180.02562 * 5 4 2 8 8 C 1.47425 * 125.65177 * 359.68664 * 7 5 4 9 9 C 1.55126 * 104.72218 * 155.81989 * 8 7 5 10 10 C 1.55161 * 101.48654 * 37.29730 * 9 8 7 11 11 H 1.08995 * 110.71875 * 82.69443 * 10 9 8 12 12 N 1.46501 * 110.87155 * 205.90107 * 10 9 8 13 13 C 1.46500 * 120.00282 * 53.60754 * 12 10 9 14 14 C 1.36941 * 119.99610 * 233.61392 * 12 10 9 15 15 H 1.07997 * 120.00287 * 21.71556 * 14 12 10 16 16 C 1.38810 * 119.99530 * 201.71972 * 14 12 10 17 17 N 1.31620 * 120.00313 * 13.65258 * 16 14 12 18 18 Si 1.86799 * 120.00044 * 193.64698 * 16 14 12 19 19 H 1.48501 * 109.46879 * 59.99979 * 18 16 14 20 20 H 1.48503 * 109.47506 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47133 * 300.00430 * 18 16 14 22 22 C 1.47024 * 125.64653 * 179.97438 * 7 5 4 23 23 N 1.46491 * 109.47295 * 239.99729 * 2 1 3 24 24 C 1.45760 * 117.95026 * 119.99701 * 23 2 1 25 25 C 1.52919 * 110.48847 * 160.92569 * 24 23 2 26 26 C 1.53340 * 108.67677 * 50.75514 * 25 24 23 27 27 C 1.53070 * 108.42602 * 292.47091 * 26 25 24 28 28 C 1.33234 * 117.98186 * 300.07346 * 23 2 1 29 29 O 1.21276 * 118.16278 * 2.21262 * 28 23 2 30 30 H 1.09005 * 109.47194 * 60.00256 * 1 2 3 31 31 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47392 * 300.00602 * 1 2 3 33 33 H 1.08997 * 109.47475 * 304.99724 * 4 2 1 34 34 H 1.08997 * 109.47246 * 65.00071 * 4 2 1 35 35 H 1.09000 * 110.36779 * 274.75028 * 8 7 5 36 36 H 1.09001 * 110.36168 * 37.07224 * 8 7 5 37 37 H 1.09005 * 111.19222 * 279.19249 * 9 8 7 38 38 H 1.08995 * 110.90682 * 155.27704 * 9 8 7 39 39 H 1.08992 * 109.47084 * 94.45862 * 13 12 10 40 40 H 1.09003 * 109.47320 * 214.46250 * 13 12 10 41 41 H 1.09001 * 109.47069 * 334.45980 * 13 12 10 42 42 H 0.96998 * 120.00050 * 180.02562 * 17 16 14 43 43 H 1.09008 * 109.88020 * 300.43993 * 22 7 5 44 44 H 1.08995 * 109.88378 * 61.59953 * 22 7 5 45 45 H 1.08998 * 109.29704 * 40.61367 * 24 23 2 46 46 H 1.09001 * 109.13430 * 281.13389 * 24 23 2 47 47 H 1.09001 * 109.60149 * 290.99936 * 25 24 23 48 48 H 1.08996 * 109.73724 * 170.59438 * 25 24 23 49 49 H 1.09000 * 109.67936 * 172.73307 * 26 25 24 50 50 H 1.09001 * 109.70317 * 52.21982 * 26 25 24 51 51 H 1.08999 * 109.40336 * 169.02691 * 27 26 25 52 52 H 1.09006 * 109.40117 * 288.85672 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6147 1.3128 6 8 4.1451 -0.0210 0.4442 7 7 4.2149 -1.1803 2.3344 8 6 3.6102 -1.9231 3.4551 9 6 4.7399 -2.8561 3.9648 10 6 5.9871 -1.9471 3.8047 11 1 6.0874 -1.2761 4.6577 12 7 7.2002 -2.7507 3.6342 13 6 7.2604 -3.7730 2.5867 14 6 8.2777 -2.5462 4.4542 15 1 8.1423 -2.0750 5.4165 16 6 9.5440 -2.9444 4.0484 17 7 9.7612 -3.2665 2.7909 18 14 10.9400 -3.0231 5.2871 19 1 10.5910 -3.9819 6.3660 20 1 12.1809 -3.4731 4.6067 21 1 11.1581 -1.6762 5.8733 22 6 5.6732 -1.1534 2.5190 23 7 2.0184 -0.6906 -1.1960 24 6 2.8530 0.0603 -2.1256 25 6 3.6413 -0.8916 -3.0261 26 6 2.6686 -1.9063 -3.6388 27 6 2.1402 -2.8069 -2.5195 28 6 1.6709 -1.9654 -1.3675 29 8 0.9366 -2.4738 -0.5471 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6054 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.2988 -1.2358 4.2417 36 1 2.7615 -2.5113 3.1062 37 1 4.8243 -3.7482 3.3442 38 1 4.5823 -3.1226 5.0099 39 1 7.7178 -3.3502 1.6922 40 1 7.8566 -4.6162 2.9357 41 1 6.2517 -4.1134 2.3527 42 1 10.6460 -3.5451 2.5074 43 1 6.1636 -1.6213 1.6652 44 1 6.0144 -0.1239 2.6265 45 1 3.5486 0.6829 -1.5629 46 1 2.2180 0.6964 -2.7422 47 1 4.3925 -1.4159 -2.4353 48 1 4.1295 -0.3272 -3.8205 49 1 3.1887 -2.5111 -4.3817 50 1 1.8379 -1.3809 -4.1100 51 1 1.3081 -3.4019 -2.8958 52 1 2.9366 -3.4705 -2.1823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971532691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:13 Heat of formation + Delta-G solvation = -59.674144 kcal Electronic energy + Delta-G solvation = -31361.884320 eV Core-core repulsion = 27361.364537 eV Total energy + Delta-G solvation = -4000.519783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97382 -40.79209 -38.91018 -37.38410 -36.56605 -36.17334 -33.54240 -32.35983 -31.24258 -30.46551 -29.94702 -28.45516 -28.06340 -25.40990 -25.18791 -24.20064 -23.81263 -22.13160 -20.90477 -20.25560 -19.30401 -18.97420 -18.14111 -17.88544 -17.44361 -17.04895 -16.68083 -16.56261 -16.19917 -15.67857 -15.25628 -15.22998 -15.05554 -14.82829 -14.69958 -14.48131 -14.21935 -14.15413 -13.98575 -13.71753 -13.30356 -13.17874 -13.09661 -12.97586 -12.78415 -12.72135 -12.60139 -12.51576 -12.43082 -12.38975 -12.22270 -12.13673 -11.86038 -11.83216 -11.82513 -11.71861 -11.44971 -10.76748 -10.64317 -10.34921 -9.62794 -9.61346 -8.85877 -7.85595 -5.34832 1.47075 1.49361 1.56065 1.63267 1.68774 1.99820 2.11843 2.50364 3.26737 3.49121 3.56666 3.59434 3.81342 3.85403 3.87787 3.91738 3.93976 4.06568 4.21871 4.26482 4.33146 4.39115 4.43169 4.49680 4.52545 4.56873 4.62902 4.71503 4.74885 4.79861 4.80643 4.86741 4.92387 4.93365 4.97485 5.01240 5.04516 5.14583 5.15572 5.23484 5.29128 5.33406 5.36665 5.40672 5.61053 5.65468 5.66837 6.28191 6.58690 6.61787 7.09814 7.18370 7.22402 7.81033 8.26046 9.17777 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.002918 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.165404 B = 9592.481886 C =10314.018565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.094 0.906 4 C -0.146 4.146 5 C 0.518 3.482 6 O -0.575 6.575 7 N -0.617 5.617 8 C 0.107 3.893 9 C -0.141 4.141 10 C 0.165 3.835 11 H 0.084 0.916 12 N -0.601 5.601 13 C 0.183 3.817 14 C -0.270 4.270 15 H 0.080 0.920 16 C -0.053 4.053 17 N -0.940 5.940 18 Si 0.973 3.027 19 H -0.275 1.275 20 H -0.297 1.297 21 H -0.274 1.274 22 C 0.104 3.896 23 N -0.585 5.585 24 C 0.113 3.887 25 C -0.134 4.134 26 C -0.113 4.113 27 C -0.137 4.137 28 C 0.506 3.494 29 O -0.587 6.587 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.100 0.900 39 H -0.006 1.006 40 H 0.020 0.980 41 H 0.027 0.973 42 H 0.248 0.752 43 H 0.030 0.970 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.110 0.890 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.954 5.792 -8.425 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.112 0.888 4 C -0.186 4.186 5 C 0.309 3.691 6 O -0.456 6.456 7 N -0.351 5.351 8 C -0.015 4.015 9 C -0.180 4.180 10 C 0.057 3.943 11 H 0.102 0.898 12 N -0.322 5.322 13 C 0.038 3.962 14 C -0.399 4.399 15 H 0.097 0.903 16 C -0.248 4.248 17 N -0.586 5.586 18 Si 0.801 3.199 19 H -0.201 1.201 20 H -0.224 1.224 21 H -0.200 1.200 22 C -0.022 4.022 23 N -0.315 5.315 24 C -0.009 4.009 25 C -0.172 4.172 26 C -0.150 4.150 27 C -0.176 4.176 28 C 0.296 3.704 29 O -0.469 6.469 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.013 0.987 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.119 0.881 49 H 0.109 0.891 50 H 0.103 0.897 51 H 0.128 0.872 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.861 5.825 -8.621 23.311 hybrid contribution 1.696 -0.173 0.340 1.739 sum -19.164 5.651 -8.281 21.628 Atomic orbital electron populations 1.22131 0.92739 1.03701 1.03028 1.20944 0.95244 0.95968 0.82884 0.88824 1.22163 0.89425 1.05611 1.01437 1.21013 0.90953 0.77526 0.79644 1.90591 1.71404 1.44558 1.39032 1.48666 1.07315 1.54387 1.24734 1.22535 0.96249 0.94327 0.88413 1.23247 0.94013 0.98032 1.02747 1.21560 0.86657 0.91941 0.94175 0.89788 1.44094 1.12347 1.38071 1.37700 1.20417 0.94765 0.90547 0.90463 1.19620 0.86311 1.36822 0.97193 0.90264 1.25842 0.99778 1.01804 0.97369 1.70264 1.21598 1.51003 1.15743 0.85258 0.78138 0.78253 0.78272 1.20105 1.22380 1.20004 1.22399 0.80557 0.99451 0.99814 1.47341 1.49477 1.11192 1.23485 1.21561 0.93600 0.94507 0.91259 1.21835 0.97940 0.98099 0.99288 1.21628 0.99495 0.97101 0.96806 1.21710 1.03299 0.98416 0.94187 1.20547 0.79971 0.82116 0.87813 1.90565 1.38902 1.71506 1.45959 0.91915 0.91478 0.89868 0.85659 0.87607 0.88516 0.89121 0.91945 0.88137 0.98735 0.96114 0.95492 0.94290 0.95192 0.93840 0.90923 0.89945 0.93849 0.88069 0.89117 0.89746 0.87221 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.08 71.98 0.65 -2.17 16 2 C 0.15 3.34 2.20 44.99 0.10 3.44 16 3 H 0.09 1.98 7.60 -2.39 -0.02 1.97 16 4 C -0.15 -3.46 4.01 29.85 0.12 -3.34 16 5 C 0.52 16.45 7.71 87.66 0.68 17.12 16 6 O -0.58 -21.53 13.56 -3.02 -0.04 -21.57 16 7 N -0.62 -19.97 3.32 -811.36 -2.70 -22.67 16 8 C 0.11 2.63 6.70 86.93 0.58 3.21 16 9 C -0.14 -4.27 6.61 32.06 0.21 -4.06 16 10 C 0.17 6.51 3.43 46.18 0.16 6.67 16 11 H 0.08 3.19 7.92 -2.39 -0.02 3.17 16 12 N -0.60 -29.93 2.93 -696.16 -2.04 -31.97 16 13 C 0.18 9.32 7.82 127.77 1.00 10.32 16 14 C -0.27 -14.62 9.63 84.03 0.81 -13.81 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.05 -2.96 5.08 84.86 0.43 -2.52 16 17 N -0.94 -56.40 10.67 21.65 0.23 -56.17 16 18 Si 0.97 44.85 29.57 68.60 2.03 46.88 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.10 4.17 6.51 86.73 0.56 4.73 16 23 N -0.58 -13.62 2.23 -802.81 -1.79 -15.41 16 24 C 0.11 2.31 5.73 86.49 0.50 2.81 16 25 C -0.13 -2.50 6.02 30.68 0.18 -2.31 16 26 C -0.11 -1.66 6.03 30.73 0.19 -1.48 16 27 C -0.14 -2.68 6.04 29.71 0.18 -2.50 16 28 C 0.51 12.81 6.86 87.73 0.60 13.42 16 29 O -0.59 -17.58 12.45 -3.02 -0.04 -17.62 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.51 5.84 -2.39 -0.01 1.50 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.11 2.84 5.61 -2.39 -0.01 2.82 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.92 7.48 -2.39 -0.02 1.90 16 37 H 0.06 2.10 6.07 -2.38 -0.01 2.08 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H -0.01 -0.33 7.33 -2.39 -0.02 -0.34 16 40 H 0.02 1.12 7.23 -2.39 -0.02 1.10 16 41 H 0.03 1.20 6.04 -2.39 -0.01 1.19 16 42 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.03 1.43 7.11 -2.38 -0.02 1.42 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.85 6.26 -2.39 -0.01 1.83 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 48 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.08 1.01 8.13 -2.39 -0.02 0.99 16 51 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -72.26 391.95 3.50 -68.77 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.90 Total: 20.23 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 6.95 Total: 29.53 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.30 Total: -126.21 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.08 Total: -39.19 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -72.26 3.50 -68.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971532691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.092 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds