Wall clock time and date at job start Tue Mar 31 2020 20:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47330 * 2 1 4 4 C 1.52999 * 109.46918 * 119.99726 * 2 1 3 5 5 C 1.50709 * 109.47158 * 185.00056 * 4 2 1 6 6 O 1.21279 * 119.99685 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99889 * 180.02562 * 5 4 2 8 8 C 1.46921 * 120.63144 * 359.71653 * 7 5 4 9 9 C 1.52759 * 109.01057 * 233.58341 * 8 7 5 10 10 C 1.53046 * 109.38329 * 305.59115 * 9 8 7 11 11 N 1.46498 * 109.44947 * 181.25030 * 10 9 8 12 12 C 1.36934 * 120.00050 * 84.93605 * 11 10 9 13 13 H 1.07999 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00398 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99850 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00547 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46882 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47237 * 120.00009 * 16 14 12 19 19 H 1.48504 * 109.47486 * 240.00620 * 16 14 12 20 20 C 1.53038 * 109.53697 * 61.23859 * 10 9 8 21 21 C 1.46926 * 120.62806 * 179.97438 * 7 5 4 22 22 N 1.46498 * 109.47093 * 239.99794 * 2 1 3 23 23 C 1.45753 * 117.94706 * 120.00140 * 22 2 1 24 24 C 1.52927 * 110.48908 * 160.92293 * 23 22 2 25 25 C 1.53348 * 108.67100 * 50.75080 * 24 23 22 26 26 C 1.53058 * 108.43797 * 292.48594 * 25 24 23 27 27 C 1.33353 * 117.94642 * 300.02010 * 22 2 1 28 28 O 1.21280 * 118.24584 * 2.24717 * 27 22 2 29 29 H 1.08996 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47041 * 300.00613 * 1 2 3 31 31 H 1.09001 * 109.46945 * 59.99985 * 1 2 3 32 32 H 1.08996 * 109.47323 * 304.99883 * 4 2 1 33 33 H 1.08994 * 109.47349 * 64.99987 * 4 2 1 34 34 H 1.08999 * 109.58929 * 353.42297 * 8 7 5 35 35 H 1.09003 * 109.58648 * 113.84887 * 8 7 5 36 36 H 1.09001 * 109.56847 * 185.55354 * 9 8 7 37 37 H 1.09002 * 109.38360 * 65.51634 * 9 8 7 38 38 H 1.09000 * 109.45960 * 301.21544 * 10 9 8 39 39 H 0.96998 * 119.99814 * 264.94279 * 11 10 9 40 40 H 0.97006 * 120.00237 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.50041 * 178.68595 * 20 10 9 42 42 H 1.09003 * 109.52856 * 58.60165 * 20 10 9 43 43 H 1.09004 * 109.59109 * 246.15603 * 21 7 5 44 44 H 1.09004 * 109.58438 * 6.43923 * 21 7 5 45 45 H 1.08998 * 109.30227 * 40.61331 * 23 22 2 46 46 H 1.08998 * 109.30323 * 281.23362 * 23 22 2 47 47 H 1.08996 * 109.60496 * 170.50895 * 24 23 22 48 48 H 1.08997 * 109.60247 * 290.99757 * 24 23 22 49 49 H 1.08997 * 109.67264 * 52.20642 * 25 24 23 50 50 H 1.09000 * 109.67050 * 172.73216 * 25 24 23 51 51 H 1.08998 * 109.39718 * 288.75313 * 26 25 24 52 52 H 1.09003 * 109.32793 * 168.97375 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 8 4.1450 -0.0211 0.4441 7 7 4.2149 -1.1804 2.3344 8 6 3.4978 -1.8985 3.3968 9 6 3.9097 -1.3243 4.7511 10 6 5.4341 -1.3697 4.8796 11 7 5.8289 -0.8469 6.1900 12 6 5.8421 -1.6738 7.2814 13 1 5.5619 -2.7115 7.1761 14 6 6.2167 -1.1787 8.5229 15 7 6.5588 0.0858 8.6511 16 14 6.2354 -2.3068 10.0116 17 1 5.8127 -3.6709 9.6042 18 1 7.6088 -2.3619 10.5737 19 1 5.3001 -1.7848 11.0401 20 6 6.0661 -0.5154 3.7784 21 6 5.6791 -1.0857 2.4098 22 7 2.0183 -0.6906 -1.1961 23 6 2.8530 0.0603 -2.1256 24 6 3.6413 -0.8917 -3.0261 25 6 2.6685 -1.9064 -3.6388 26 6 2.1397 -2.8067 -2.5197 27 6 1.6710 -1.9668 -1.3665 28 8 0.9369 -2.4763 -0.5464 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 2.4234 -1.7749 3.2605 35 1 3.7536 -2.9574 3.3590 36 1 3.4596 -1.9139 5.5498 37 1 3.5689 -0.2916 4.8249 38 1 5.7763 -2.3999 4.7815 39 1 6.0809 0.0850 6.2844 40 1 6.8202 0.4320 9.5188 41 1 7.1508 -0.5292 3.8845 42 1 5.7056 0.5100 3.8605 43 1 6.1162 -2.0771 2.2900 44 1 6.0438 -0.4279 1.6208 45 1 3.5487 0.6828 -1.5629 46 1 2.2208 0.6989 -2.7424 47 1 4.1273 -0.3252 -3.8204 48 1 4.3925 -1.4159 -2.4353 49 1 1.8379 -1.3804 -4.1095 50 1 3.1887 -2.5110 -4.3817 51 1 2.9353 -3.4717 -2.1837 52 1 1.3071 -3.4004 -2.8973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996464072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:47 Heat of formation + Delta-G solvation = -64.856783 kcal Electronic energy + Delta-G solvation = -30948.597572 eV Core-core repulsion = 26947.853052 eV Total energy + Delta-G solvation = -4000.744519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11590 -39.75203 -37.42040 -36.57729 -35.42476 -34.45966 -32.22353 -31.53733 -30.80213 -29.70853 -29.33963 -27.91855 -24.83993 -24.67356 -23.52695 -22.95939 -22.57203 -21.35887 -20.20702 -18.88986 -18.45660 -17.24355 -17.10233 -16.86766 -16.29286 -15.91292 -15.36555 -15.28481 -14.83282 -14.52102 -14.31893 -14.14700 -13.91013 -13.76349 -13.61506 -13.44510 -13.40577 -13.25360 -12.88361 -12.48476 -12.38045 -12.18314 -11.96535 -11.89123 -11.75173 -11.54937 -11.51948 -11.24989 -11.20185 -11.00247 -10.95451 -10.86225 -10.82201 -10.47453 -10.21275 -9.83270 -9.69576 -9.56164 -9.49687 -8.93037 -8.77558 -8.45075 -6.99596 -5.79562 -3.08755 2.51644 2.76195 2.87648 3.15099 3.41056 3.46817 3.48984 4.31164 4.47687 4.50057 4.52607 4.55771 4.58436 4.73790 5.06319 5.07805 5.12950 5.13591 5.24173 5.32443 5.36126 5.36749 5.41445 5.43955 5.47335 5.52616 5.53712 5.56868 5.60156 5.65801 5.68938 5.71263 5.77178 5.85118 5.94963 5.95675 6.02073 6.12463 6.23164 6.38073 6.38903 6.46949 6.51061 6.63921 6.89716 7.03165 7.42028 7.57375 7.67329 8.07164 8.30773 8.38717 9.50028 10.07490 10.42203 11.43068 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.002391 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.184014 B =11706.358627 C =11977.942019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.160 3.840 3 H 0.091 0.909 4 C -0.163 4.163 5 C 0.518 3.482 6 O -0.552 6.552 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.151 4.151 10 C 0.179 3.821 11 N -0.724 5.724 12 C -0.239 4.239 13 H 0.071 0.929 14 C -0.014 4.014 15 N -0.932 5.932 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.138 4.138 21 C 0.117 3.883 22 N -0.583 5.583 23 C 0.114 3.886 24 C -0.134 4.134 25 C -0.123 4.123 26 C -0.135 4.135 27 C 0.515 3.485 28 O -0.556 6.556 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.096 0.904 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 -1.406 -25.779 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.204 4.204 5 C 0.307 3.693 6 O -0.432 6.432 7 N -0.339 5.339 8 C -0.016 4.016 9 C -0.192 4.192 10 C 0.069 3.931 11 N -0.365 5.365 12 C -0.370 4.370 13 H 0.089 0.911 14 C -0.210 4.210 15 N -0.581 5.581 16 Si 0.737 3.263 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.177 4.177 21 C -0.006 4.006 22 N -0.314 5.314 23 C -0.009 4.009 24 C -0.171 4.171 25 C -0.161 4.161 26 C -0.175 4.175 27 C 0.304 3.696 28 O -0.437 6.437 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.114 0.886 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.779 -1.503 -25.691 27.530 hybrid contribution 0.180 -0.235 1.132 1.170 sum -9.599 -1.738 -24.559 26.425 Atomic orbital electron populations 1.22246 0.94297 1.04619 1.01718 1.20806 0.94175 0.96089 0.83273 0.89061 1.22236 0.92620 1.05877 0.99635 1.20594 0.89928 0.77849 0.80933 1.90561 1.70460 1.43441 1.38697 1.48168 1.07593 1.54278 1.23836 1.21772 0.96255 0.95918 0.87630 1.22595 1.00900 1.01275 0.94446 1.20156 0.90919 0.96108 0.85903 1.42443 1.80192 1.11110 1.02713 1.19276 1.37930 0.92729 0.87040 0.91123 1.24754 1.02282 0.96211 0.97751 1.69675 1.51989 1.12857 1.23551 0.86135 0.77211 0.79717 0.83231 1.20542 1.21881 1.21877 1.22198 1.01380 1.00262 0.93839 1.21579 0.79293 1.01210 0.98478 1.47234 1.49867 1.11095 1.23218 1.21485 0.93664 0.94363 0.91376 1.21839 0.98263 0.97823 0.99203 1.21664 0.99435 0.97639 0.97374 1.21656 1.03091 0.98410 0.94337 1.20079 0.80347 0.81848 0.87341 1.90607 1.37354 1.70872 1.44835 0.89581 0.91748 0.92741 0.88219 0.86505 0.90407 0.91636 0.90612 0.92256 0.93488 0.78290 0.93548 0.90689 0.91914 0.91924 0.89500 0.88617 0.92575 0.90088 0.90807 0.91326 0.90803 0.88570 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.08 37.16 0.34 -1.31 16 2 C 0.16 1.71 2.20 -67.93 -0.15 1.56 16 3 H 0.09 0.96 7.60 -51.92 -0.39 0.56 16 4 C -0.16 -1.92 3.35 -27.88 -0.09 -2.01 16 5 C 0.52 7.21 7.56 -10.98 -0.08 7.13 16 6 O -0.55 -8.42 12.65 5.56 0.07 -8.35 16 7 N -0.61 -8.56 2.98 -173.00 -0.52 -9.07 16 8 C 0.11 1.46 6.31 -3.94 -0.02 1.44 16 9 C -0.15 -2.54 5.64 -26.83 -0.15 -2.70 16 10 C 0.18 3.43 2.73 -67.89 -0.19 3.25 16 11 N -0.72 -17.78 5.12 -53.39 -0.27 -18.05 16 12 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 14 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 15 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 16 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 20 C -0.14 -2.28 5.55 -26.59 -0.15 -2.43 16 21 C 0.12 1.69 6.44 -3.69 -0.02 1.66 16 22 N -0.58 -6.07 2.24 -167.37 -0.37 -6.44 16 23 C 0.11 0.98 5.73 -4.48 -0.03 0.96 16 24 C -0.13 -0.95 6.02 -26.59 -0.16 -1.11 16 25 C -0.12 -0.77 6.03 -26.52 -0.16 -0.93 16 26 C -0.14 -1.11 6.03 -28.11 -0.17 -1.28 16 27 C 0.52 5.81 6.86 -11.87 -0.08 5.73 16 28 O -0.56 -7.78 12.46 5.56 0.07 -7.71 16 29 H 0.09 1.00 5.84 -51.93 -0.30 0.70 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 1.05 7.68 -51.93 -0.40 0.65 16 33 H 0.12 1.52 5.71 -51.93 -0.30 1.22 16 34 H 0.08 0.92 5.93 -51.93 -0.31 0.61 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 45 H 0.10 0.99 6.26 -51.93 -0.32 0.67 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 49 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 52 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 394.48 15.07 5.94 5.94 Total: -1.00 -31.99 394.48 -9.75 -41.75 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -9.01 Total: 9.20 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.36 Total: 2.83 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.44 Total: -60.83 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.14 Total: -16.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.99 -9.75 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996464072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.107 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds