Wall clock time and date at job start Tue Mar 31 2020 20:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47330 * 2 1 4 4 C 1.52999 * 109.46918 * 119.99726 * 2 1 3 5 5 C 1.50709 * 109.47158 * 185.00056 * 4 2 1 6 6 O 1.21279 * 119.99685 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99889 * 180.02562 * 5 4 2 8 8 C 1.46921 * 120.63144 * 359.71653 * 7 5 4 9 9 C 1.52759 * 109.01057 * 233.58341 * 8 7 5 10 10 C 1.53046 * 109.38329 * 305.59115 * 9 8 7 11 11 N 1.46498 * 109.44947 * 181.25030 * 10 9 8 12 12 C 1.36934 * 120.00050 * 84.93605 * 11 10 9 13 13 H 1.07999 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.38809 * 120.00398 * 179.97438 * 12 11 10 15 15 N 1.31620 * 119.99850 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00547 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.46882 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47237 * 120.00009 * 16 14 12 19 19 H 1.48504 * 109.47486 * 240.00620 * 16 14 12 20 20 C 1.53038 * 109.53697 * 61.23859 * 10 9 8 21 21 C 1.46926 * 120.62806 * 179.97438 * 7 5 4 22 22 N 1.46498 * 109.47093 * 239.99794 * 2 1 3 23 23 C 1.45753 * 117.94706 * 120.00140 * 22 2 1 24 24 C 1.52927 * 110.48908 * 160.92293 * 23 22 2 25 25 C 1.53348 * 108.67100 * 50.75080 * 24 23 22 26 26 C 1.53058 * 108.43797 * 292.48594 * 25 24 23 27 27 C 1.33353 * 117.94642 * 300.02010 * 22 2 1 28 28 O 1.21280 * 118.24584 * 2.24717 * 27 22 2 29 29 H 1.08996 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47041 * 300.00613 * 1 2 3 31 31 H 1.09001 * 109.46945 * 59.99985 * 1 2 3 32 32 H 1.08996 * 109.47323 * 304.99883 * 4 2 1 33 33 H 1.08994 * 109.47349 * 64.99987 * 4 2 1 34 34 H 1.08999 * 109.58929 * 353.42297 * 8 7 5 35 35 H 1.09003 * 109.58648 * 113.84887 * 8 7 5 36 36 H 1.09001 * 109.56847 * 185.55354 * 9 8 7 37 37 H 1.09002 * 109.38360 * 65.51634 * 9 8 7 38 38 H 1.09000 * 109.45960 * 301.21544 * 10 9 8 39 39 H 0.96998 * 119.99814 * 264.94279 * 11 10 9 40 40 H 0.97006 * 120.00237 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.50041 * 178.68595 * 20 10 9 42 42 H 1.09003 * 109.52856 * 58.60165 * 20 10 9 43 43 H 1.09004 * 109.59109 * 246.15603 * 21 7 5 44 44 H 1.09004 * 109.58438 * 6.43923 * 21 7 5 45 45 H 1.08998 * 109.30227 * 40.61331 * 23 22 2 46 46 H 1.08998 * 109.30323 * 281.23362 * 23 22 2 47 47 H 1.08996 * 109.60496 * 170.50895 * 24 23 22 48 48 H 1.08997 * 109.60247 * 290.99757 * 24 23 22 49 49 H 1.08997 * 109.67264 * 52.20642 * 25 24 23 50 50 H 1.09000 * 109.67050 * 172.73216 * 25 24 23 51 51 H 1.08998 * 109.39718 * 288.75313 * 26 25 24 52 52 H 1.09003 * 109.32793 * 168.97375 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 8 4.1450 -0.0211 0.4441 7 7 4.2149 -1.1804 2.3344 8 6 3.4978 -1.8985 3.3968 9 6 3.9097 -1.3243 4.7511 10 6 5.4341 -1.3697 4.8796 11 7 5.8289 -0.8469 6.1900 12 6 5.8421 -1.6738 7.2814 13 1 5.5619 -2.7115 7.1761 14 6 6.2167 -1.1787 8.5229 15 7 6.5588 0.0858 8.6511 16 14 6.2354 -2.3068 10.0116 17 1 5.8127 -3.6709 9.6042 18 1 7.6088 -2.3619 10.5737 19 1 5.3001 -1.7848 11.0401 20 6 6.0661 -0.5154 3.7784 21 6 5.6791 -1.0857 2.4098 22 7 2.0183 -0.6906 -1.1961 23 6 2.8530 0.0603 -2.1256 24 6 3.6413 -0.8917 -3.0261 25 6 2.6685 -1.9064 -3.6388 26 6 2.1397 -2.8067 -2.5197 27 6 1.6710 -1.9668 -1.3665 28 8 0.9369 -2.4763 -0.5464 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7714 1.2057 34 1 2.4234 -1.7749 3.2605 35 1 3.7536 -2.9574 3.3590 36 1 3.4596 -1.9139 5.5498 37 1 3.5689 -0.2916 4.8249 38 1 5.7763 -2.3999 4.7815 39 1 6.0809 0.0850 6.2844 40 1 6.8202 0.4320 9.5188 41 1 7.1508 -0.5292 3.8845 42 1 5.7056 0.5100 3.8605 43 1 6.1162 -2.0771 2.2900 44 1 6.0438 -0.4279 1.6208 45 1 3.5487 0.6828 -1.5629 46 1 2.2208 0.6989 -2.7424 47 1 4.1273 -0.3252 -3.8204 48 1 4.3925 -1.4159 -2.4353 49 1 1.8379 -1.3804 -4.1095 50 1 3.1887 -2.5110 -4.3817 51 1 2.9353 -3.4717 -2.1837 52 1 1.3071 -3.4004 -2.8973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996464072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:46 Heat of formation + Delta-G solvation = -83.649399 kcal Electronic energy + Delta-G solvation = -30949.412480 eV Core-core repulsion = 26947.853052 eV Total energy + Delta-G solvation = -4001.559428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.98831 -40.85927 -38.74382 -37.35548 -36.28463 -36.05987 -33.88294 -32.62275 -31.89408 -31.02578 -30.40389 -28.95334 -26.49079 -25.34151 -24.51327 -24.35577 -23.85850 -22.26577 -21.49229 -20.08864 -19.26289 -19.05441 -18.22857 -17.83265 -17.27045 -16.74732 -16.68680 -16.33500 -16.28689 -15.48847 -15.44497 -15.30379 -15.06740 -15.01551 -14.84402 -14.67207 -14.48324 -14.12711 -13.90437 -13.81286 -13.35585 -13.17532 -13.11485 -12.97566 -12.89045 -12.78025 -12.64175 -12.53882 -12.35332 -12.18960 -12.11728 -12.00637 -11.81518 -11.77601 -11.72415 -11.67319 -11.32498 -10.95224 -10.65442 -10.32811 -9.65105 -9.58486 -9.02035 -7.94516 -5.23254 1.47558 1.47685 1.57674 1.64018 1.70505 2.01839 2.13184 2.55781 3.38653 3.48474 3.61877 3.79957 3.84301 3.91165 3.93510 3.96138 3.98147 4.06387 4.16277 4.24860 4.30637 4.37563 4.42124 4.51040 4.55776 4.59695 4.62309 4.71500 4.76151 4.78231 4.82314 4.83447 4.84607 4.96303 4.97002 4.98319 5.02070 5.06347 5.08874 5.18843 5.29648 5.34498 5.38837 5.47689 5.52942 5.62209 5.67772 6.27402 6.43420 6.64352 7.18343 7.25648 7.33439 8.08831 8.32009 9.29298 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.002391 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.184014 B =11706.358627 C =11977.942019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.093 0.907 4 C -0.157 4.157 5 C 0.515 3.485 6 O -0.565 6.565 7 N -0.610 5.610 8 C 0.117 3.883 9 C -0.139 4.139 10 C 0.174 3.826 11 N -0.738 5.738 12 C -0.234 4.234 13 H 0.078 0.922 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.296 1.296 19 H -0.295 1.295 20 C -0.126 4.126 21 C 0.126 3.874 22 N -0.583 5.583 23 C 0.111 3.889 24 C -0.130 4.130 25 C -0.115 4.115 26 C -0.134 4.134 27 C 0.505 3.495 28 O -0.589 6.589 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.071 0.929 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.096 0.904 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 -2.376 -27.718 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.111 0.889 4 C -0.197 4.197 5 C 0.305 3.695 6 O -0.445 6.445 7 N -0.343 5.343 8 C -0.006 4.006 9 C -0.180 4.180 10 C 0.066 3.934 11 N -0.377 5.377 12 C -0.365 4.365 13 H 0.096 0.904 14 C -0.270 4.270 15 N -0.623 5.623 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.223 1.223 19 H -0.223 1.223 20 C -0.165 4.165 21 C 0.003 3.997 22 N -0.313 5.313 23 C -0.011 4.011 24 C -0.167 4.167 25 C -0.152 4.152 26 C -0.174 4.174 27 C 0.295 3.705 28 O -0.472 6.472 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.202 0.798 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.111 0.889 51 H 0.114 0.886 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.638 -2.497 -27.690 29.768 hybrid contribution 0.449 0.093 1.654 1.716 sum -10.189 -2.404 -26.036 28.062 Atomic orbital electron populations 1.22146 0.93425 1.03614 1.02749 1.20868 0.94831 0.95987 0.83123 0.88892 1.22215 0.90940 1.05629 1.00916 1.20988 0.90763 0.77245 0.80523 1.90565 1.70942 1.43879 1.39145 1.48231 1.07450 1.54481 1.24112 1.21712 0.97432 0.96068 0.85371 1.22365 0.98665 1.00687 0.96300 1.20397 0.92553 0.96160 0.84337 1.42662 1.80519 1.10322 1.04196 1.19650 1.35885 0.93198 0.87806 0.90432 1.25548 1.03247 0.97603 1.00636 1.69830 1.54026 1.14671 1.23744 0.85110 0.76620 0.78617 0.79659 1.18857 1.22298 1.22259 1.22043 1.00910 0.99207 0.94315 1.21462 0.79801 1.01742 0.96716 1.47351 1.49632 1.11091 1.23265 1.21587 0.93612 0.94629 0.91274 1.21824 0.97881 0.97824 0.99208 1.21639 0.99514 0.97235 0.96852 1.21693 1.03383 0.98367 0.93938 1.20654 0.79929 0.82104 0.87818 1.90590 1.38889 1.71533 1.46181 0.91459 0.90546 0.91917 0.86919 0.87345 0.88231 0.90478 0.91703 0.93388 0.93582 0.79812 0.94155 0.91048 0.93061 0.90585 0.89437 0.90465 0.90687 0.88076 0.92680 0.90463 0.88872 0.88566 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.08 71.98 0.65 -2.25 16 2 C 0.16 3.14 2.20 44.99 0.10 3.23 16 3 H 0.09 1.83 7.60 -2.38 -0.02 1.81 16 4 C -0.16 -3.48 3.35 29.85 0.10 -3.38 16 5 C 0.51 13.69 7.56 87.66 0.66 14.35 16 6 O -0.57 -16.68 12.65 -3.03 -0.04 -16.71 16 7 N -0.61 -16.34 2.98 -819.65 -2.44 -18.78 16 8 C 0.12 2.98 6.31 86.22 0.54 3.52 16 9 C -0.14 -4.59 5.64 30.53 0.17 -4.42 16 10 C 0.17 6.60 2.73 45.02 0.12 6.72 16 11 N -0.74 -36.62 5.12 -322.81 -1.65 -38.28 16 12 C -0.23 -12.71 9.93 84.03 0.83 -11.88 16 13 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 14 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 15 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 16 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 20 C -0.13 -4.12 5.55 30.69 0.17 -3.95 16 21 C 0.13 3.46 6.44 86.38 0.56 4.02 16 22 N -0.58 -11.40 2.24 -802.63 -1.79 -13.20 16 23 C 0.11 1.75 5.73 86.50 0.50 2.24 16 24 C -0.13 -1.59 6.02 30.69 0.18 -1.40 16 25 C -0.11 -1.12 6.03 30.73 0.19 -0.94 16 26 C -0.13 -1.97 6.03 29.70 0.18 -1.80 16 27 C 0.50 10.85 6.86 87.71 0.60 11.45 16 28 O -0.59 -16.14 12.46 -3.03 -0.04 -16.18 16 29 H 0.07 1.51 5.84 -2.39 -0.01 1.50 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 2.18 7.68 -2.39 -0.02 2.16 16 33 H 0.11 2.69 5.71 -2.39 -0.01 2.68 16 34 H 0.10 2.14 5.93 -2.39 -0.01 2.13 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.37 20.08 7.80 -92.71 -0.72 19.36 16 40 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 2.45 7.00 -2.38 -0.02 2.43 16 45 H 0.08 1.53 6.26 -2.39 -0.01 1.51 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.05 0.89 8.12 -2.39 -0.02 0.87 16 49 H 0.08 0.66 8.13 -2.39 -0.02 0.64 16 50 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.27 394.48 2.56 -66.71 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.18 Total: 36.26 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.03 Total: 11.52 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -5.60 Total: -129.50 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.08 Total: -32.89 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -69.27 2.56 -66.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996464072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.940 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds