Wall clock time and date at job start Tue Mar 31 2020 20:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47395 * 2 1 4 4 C 1.53004 * 109.47023 * 119.99589 * 2 1 3 5 5 C 1.50700 * 109.47208 * 185.00002 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.47423 * 125.64829 * 359.41380 * 7 5 4 9 9 C 1.55137 * 104.71983 * 155.82193 * 8 7 5 10 10 H 1.08997 * 110.90402 * 155.27666 * 9 8 7 11 11 N 1.46496 * 111.18936 * 279.19142 * 9 8 7 12 12 C 1.36935 * 119.99787 * 267.18819 * 11 9 8 13 13 H 1.07997 * 120.00229 * 359.97438 * 12 11 9 14 14 C 1.38817 * 119.99709 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99864 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00310 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47156 * 90.00131 * 16 14 12 18 18 H 1.48495 * 109.47480 * 210.00457 * 16 14 12 19 19 H 1.48507 * 109.47046 * 330.00543 * 16 14 12 20 20 C 1.55161 * 101.48526 * 37.29517 * 9 8 7 21 21 C 1.53001 * 110.71686 * 205.97012 * 20 9 8 22 22 C 1.53004 * 110.87218 * 82.76833 * 20 9 8 23 23 C 1.47019 * 125.64379 * 179.72980 * 7 5 4 24 24 N 1.46504 * 109.47290 * 239.99415 * 2 1 3 25 25 C 1.46762 * 124.34709 * 119.72796 * 24 2 1 26 26 C 1.54659 * 105.38243 * 162.85493 * 25 24 2 27 27 C 1.54629 * 101.68450 * 25.76595 * 26 25 24 28 28 C 1.34413 * 124.35201 * 300.02631 * 24 2 1 29 29 O 1.21280 * 124.94018 * 0.43019 * 28 24 2 30 30 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47437 * 300.00370 * 1 2 3 32 32 H 1.09004 * 109.46778 * 60.00640 * 1 2 3 33 33 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 34 34 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 35 35 H 1.09007 * 110.36652 * 274.74673 * 8 7 5 36 36 H 1.08993 * 110.36828 * 37.07553 * 8 7 5 37 37 H 0.97003 * 119.99795 * 87.18767 * 11 9 8 38 38 H 0.97000 * 120.00216 * 179.97438 * 15 14 12 39 39 H 1.09008 * 109.46770 * 174.97513 * 21 20 9 40 40 H 1.08998 * 109.47310 * 294.97401 * 21 20 9 41 41 H 1.08994 * 109.47126 * 54.97785 * 21 20 9 42 42 H 1.08999 * 109.46437 * 304.93026 * 22 20 9 43 43 H 1.08998 * 109.47052 * 64.93625 * 22 20 9 44 44 H 1.08995 * 109.46726 * 184.93731 * 22 20 9 45 45 H 1.09003 * 109.88210 * 300.43359 * 23 7 5 46 46 H 1.08999 * 109.89027 * 61.44819 * 23 7 5 47 47 H 1.09008 * 110.24828 * 281.98796 * 25 24 2 48 48 H 1.09001 * 110.24663 * 43.98058 * 25 24 2 49 49 H 1.08998 * 111.19534 * 267.59082 * 26 25 24 50 50 H 1.09006 * 110.85067 * 143.79053 * 26 25 24 51 51 H 1.08991 * 110.48521 * 216.30897 * 27 26 25 52 52 H 1.08994 * 110.59731 * 93.71844 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 8 4.1450 -0.0212 0.4441 7 7 4.2152 -1.1848 2.3318 8 6 3.6105 -1.9278 3.4523 9 6 4.7382 -2.8657 3.9576 10 1 4.5820 -3.1338 5.0025 11 7 4.8455 -4.0634 3.1208 12 6 4.1623 -5.2001 3.4616 13 1 3.5447 -5.2139 4.3475 14 6 4.2644 -6.3352 2.6690 15 7 3.6081 -7.4280 2.9968 16 14 5.3331 -6.3116 1.1371 17 1 6.7120 -6.7360 1.4889 18 1 4.7709 -7.2435 0.1269 19 1 5.3661 -4.9363 0.5777 20 6 5.9882 -1.9608 3.7964 21 6 7.2492 -2.8074 3.6123 22 6 6.1393 -1.0214 4.9946 23 6 5.6740 -1.1629 2.5132 24 7 2.0184 -0.6907 -1.1961 25 6 2.8609 -0.0698 -2.2249 26 6 3.4726 -1.2470 -3.0198 27 6 2.4202 -2.3573 -2.7946 28 6 1.7477 -1.9729 -1.4952 29 8 1.0634 -2.7138 -0.8215 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7515 -1.7715 1.2057 34 1 1.6053 -0.2616 2.1370 35 1 3.3033 -1.2409 4.2411 36 1 2.7590 -2.5124 3.1043 37 1 5.4004 -4.0511 2.3253 38 1 3.6792 -8.2210 2.4427 39 1 8.0990 -2.1547 3.4123 40 1 7.4374 -3.3810 4.5199 41 1 7.1097 -3.4895 2.7737 42 1 5.2206 -0.4498 5.1261 43 1 6.3349 -1.6069 5.8929 44 1 6.9701 -0.3383 4.8181 45 1 6.1611 -1.6304 1.6575 46 1 6.0191 -0.1344 2.6197 47 1 2.2560 0.5574 -2.8800 48 1 3.6504 0.5207 -1.7600 49 1 4.4402 -1.5380 -2.6109 50 1 3.5573 -0.9984 -4.0777 51 1 2.9050 -3.3289 -2.7005 52 1 1.6964 -2.3704 -3.6094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996515110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:00 Heat of formation + Delta-G solvation = -53.426765 kcal Electronic energy + Delta-G solvation = -32094.970329 eV Core-core repulsion = 28094.721452 eV Total energy + Delta-G solvation = -4000.248876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63081 -39.82911 -38.00075 -36.16769 -34.79357 -33.96720 -33.30129 -31.06017 -30.13547 -28.41472 -28.33632 -27.41120 -26.86676 -25.70032 -23.63883 -22.55277 -21.89272 -21.41887 -19.35518 -19.04639 -18.36597 -17.58766 -16.88191 -16.61968 -16.35831 -15.71955 -15.57962 -14.79739 -14.48743 -14.34935 -14.07565 -13.87094 -13.69535 -13.55321 -13.53456 -13.08297 -12.93731 -12.82343 -12.67281 -12.47577 -12.34996 -12.16251 -11.91930 -11.83514 -11.77869 -11.68997 -11.51511 -11.44050 -11.28868 -11.14516 -10.97923 -10.95931 -10.61644 -10.55119 -10.26137 -9.97101 -9.60154 -9.51606 -9.43249 -9.02978 -8.57175 -8.29738 -7.31307 -5.80992 -3.17213 2.77075 2.92240 3.11371 3.30992 3.35421 3.39365 3.44209 4.40806 4.53914 4.56384 4.57553 4.82329 4.85356 4.88400 4.98673 5.00622 5.06763 5.18665 5.27849 5.32010 5.46866 5.49262 5.52840 5.56140 5.57299 5.65215 5.67926 5.71813 5.77782 5.78637 5.82800 5.85599 5.91403 5.98426 6.04126 6.04916 6.08603 6.12577 6.16471 6.22621 6.25686 6.45295 6.54784 6.67144 6.69811 6.74159 7.30188 7.86220 7.93043 8.37347 8.37901 8.46206 9.14712 9.87654 10.05920 11.36872 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009624 B = 0.005070 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.663567 B = 5520.926736 C = 6875.454529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.176 3.824 3 H 0.092 0.908 4 C -0.158 4.158 5 C 0.532 3.468 6 O -0.555 6.555 7 N -0.605 5.605 8 C 0.067 3.933 9 C 0.185 3.815 10 H 0.083 0.917 11 N -0.732 5.732 12 C -0.249 4.249 13 H 0.093 0.907 14 C 0.013 3.987 15 N -0.928 5.928 16 Si 0.878 3.122 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.279 1.279 20 C -0.093 4.093 21 C -0.127 4.127 22 C -0.130 4.130 23 C 0.123 3.877 24 N -0.604 5.604 25 C 0.107 3.893 26 C -0.130 4.130 27 C -0.158 4.158 28 C 0.514 3.486 29 O -0.526 6.526 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.098 0.902 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 18.961 -5.812 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.073 3.927 3 H 0.110 0.890 4 C -0.198 4.198 5 C 0.322 3.678 6 O -0.435 6.435 7 N -0.338 5.338 8 C -0.059 4.059 9 C 0.073 3.927 10 H 0.101 0.899 11 N -0.373 5.373 12 C -0.379 4.379 13 H 0.110 0.890 14 C -0.183 4.183 15 N -0.575 5.575 16 Si 0.708 3.292 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.095 4.095 21 C -0.185 4.185 22 C -0.187 4.187 23 C 0.000 4.000 24 N -0.338 5.338 25 C -0.016 4.016 26 C -0.168 4.168 27 C -0.198 4.198 28 C 0.301 3.699 29 O -0.403 6.403 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.197 0.803 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.117 0.883 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.034 18.731 -5.801 19.608 hybrid contribution 0.703 -0.158 -1.164 1.369 sum 0.668 18.572 -6.965 19.847 Atomic orbital electron populations 1.22184 0.94370 1.03951 1.02011 1.20614 0.93589 0.95950 0.82536 0.88996 1.22149 0.92691 1.05479 0.99499 1.20158 0.89590 0.77953 0.80115 1.90575 1.70549 1.44159 1.38176 1.48371 1.07462 1.53604 1.24329 1.23459 0.99982 0.94397 0.88056 1.21339 0.89904 0.85803 0.95670 0.89937 1.42706 1.56879 1.09294 1.28417 1.19032 1.22179 0.87734 1.08916 0.88959 1.24618 0.99558 0.95832 0.98328 1.69683 1.45448 1.02389 1.39958 0.86651 0.80775 0.77189 0.84547 1.20988 1.21589 1.20512 1.21973 0.97423 0.95882 0.94229 1.21643 0.94931 0.98896 1.02986 1.21734 1.01377 0.98546 0.97078 1.21936 0.81193 0.99407 0.97473 1.48180 1.51222 1.11987 1.22452 1.22095 0.94308 0.95875 0.89302 1.22583 0.98897 0.94492 1.00807 1.22333 0.99418 1.01131 0.96919 1.20879 0.80300 0.81596 0.87101 1.90734 1.39483 1.54603 1.55437 0.90688 0.91382 0.92316 0.86979 0.88303 0.92224 0.89898 0.80289 0.92961 0.93402 0.91745 0.92160 0.92627 0.92040 0.92772 0.92169 0.92140 0.91986 0.89046 0.90057 0.89669 0.88320 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.20 37.16 0.34 -1.54 16 2 C 0.18 2.27 2.43 -67.93 -0.16 2.10 16 3 H 0.09 1.08 7.88 -51.93 -0.41 0.67 16 4 C -0.16 -2.30 4.13 -27.88 -0.12 -2.42 16 5 C 0.53 8.92 7.71 -10.98 -0.08 8.84 16 6 O -0.56 -9.94 13.96 5.55 0.08 -9.86 16 7 N -0.61 -10.04 3.32 -170.37 -0.57 -10.61 16 8 C 0.07 1.10 6.09 -2.41 -0.01 1.08 16 9 C 0.19 3.29 2.96 -65.66 -0.19 3.09 16 10 H 0.08 1.46 7.99 -51.93 -0.42 1.04 16 11 N -0.73 -16.58 4.37 -51.23 -0.22 -16.80 16 12 C -0.25 -6.79 10.44 -15.06 -0.16 -6.95 16 13 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 14 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 15 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 16 Si 0.88 22.57 27.74 -169.99 -4.71 17.85 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 19 H -0.28 -7.00 6.52 56.52 0.37 -6.63 16 20 C -0.09 -1.37 0.80 -152.67 -0.12 -1.49 16 21 C -0.13 -1.89 8.15 37.16 0.30 -1.58 16 22 C -0.13 -1.50 8.44 37.16 0.31 -1.19 16 23 C 0.12 1.92 6.03 -3.06 -0.02 1.90 16 24 N -0.60 -8.37 2.20 -164.73 -0.36 -8.73 16 25 C 0.11 1.20 6.87 -3.03 -0.02 1.18 16 26 C -0.13 -1.37 7.19 -25.00 -0.18 -1.54 16 27 C -0.16 -1.99 6.86 -26.74 -0.18 -2.17 16 28 C 0.51 8.35 7.39 -10.86 -0.08 8.27 16 29 O -0.53 -10.66 15.07 5.56 0.08 -10.57 16 30 H 0.07 1.04 6.77 -51.93 -0.35 0.69 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 2.00 6.36 -51.92 -0.33 1.67 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.81 7.71 -51.92 -0.40 0.41 16 36 H 0.08 1.55 7.47 -51.93 -0.39 1.16 16 37 H 0.36 8.47 4.19 -40.82 -0.17 8.30 16 38 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 39 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.04 6.34 -51.93 -0.33 0.71 16 42 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 1.05 7.82 -51.93 -0.41 0.64 16 46 H 0.06 0.87 7.85 -51.93 -0.41 0.47 16 47 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 48 H 0.09 1.13 6.74 -51.93 -0.35 0.78 16 49 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 52 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -34.14 400.18 -8.38 -42.53 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -9.01 Total: 10.54 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.47 Total: 7.88 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.38 Total: -64.39 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.16 Total: -20.44 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.14 -8.38 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996515110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.900 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds