Wall clock time and date at job start Tue Mar 31 2020 20:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.50698 * 109.47184 * 175.00464 * 4 2 1 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.46924 * 120.62981 * 359.71541 * 7 5 4 9 9 C 1.53618 * 108.54299 * 126.37305 * 8 7 5 10 10 C 1.53038 * 109.24352 * 54.85410 * 9 8 7 11 11 C 1.53042 * 109.53856 * 298.51127 * 10 9 8 12 12 H 1.08995 * 109.49479 * 301.41314 * 11 10 9 13 13 N 1.46497 * 109.52329 * 181.33431 * 11 10 9 14 14 C 1.36941 * 120.00429 * 85.14532 * 13 11 10 15 15 H 1.08004 * 119.99406 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00363 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99641 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00017 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47208 * 59.99940 * 18 16 14 20 20 H 1.48499 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46964 * 299.99890 * 18 16 14 22 22 C 1.46929 * 120.63006 * 179.97438 * 7 5 4 23 23 N 1.46497 * 109.47340 * 120.00250 * 2 1 3 24 24 C 1.45753 * 117.94669 * 239.73864 * 23 2 1 25 25 C 1.53106 * 110.38339 * 160.73865 * 24 23 2 26 26 C 1.53341 * 108.52851 * 51.11698 * 25 24 23 27 27 C 1.53071 * 108.42559 * 292.30626 * 26 25 24 28 28 C 1.33356 * 117.94606 * 59.99206 * 23 2 1 29 29 O 1.21276 * 118.24493 * 2.21259 * 28 23 2 30 30 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 31 31 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 33 33 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 34 34 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 35 35 H 1.08999 * 109.58555 * 246.20421 * 8 7 5 36 36 H 1.08996 * 109.58826 * 6.62389 * 8 7 5 37 37 H 1.09004 * 109.63577 * 294.86133 * 9 8 7 38 38 H 1.09001 * 109.45970 * 174.74125 * 9 8 7 39 39 H 1.09004 * 109.46083 * 178.48950 * 10 9 8 40 40 H 1.08992 * 109.44845 * 58.52752 * 10 9 8 41 41 H 0.97004 * 119.99972 * 265.14743 * 13 11 10 42 42 H 0.97003 * 119.99526 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.58761 * 353.36851 * 22 7 5 44 44 H 1.08991 * 109.58780 * 113.65362 * 22 7 5 45 45 H 1.08995 * 109.30155 * 281.23523 * 24 23 2 46 46 H 1.08999 * 109.30131 * 40.60886 * 24 23 2 47 47 H 1.08997 * 109.80755 * 291.32087 * 25 24 23 48 48 H 1.09006 * 109.53852 * 170.74851 * 25 24 23 49 49 H 1.09004 * 109.67253 * 172.57595 * 26 25 24 50 50 H 1.09007 * 109.67579 * 52.04232 * 26 25 24 51 51 H 1.08996 * 109.39664 * 288.77436 * 27 26 25 52 52 H 1.08996 * 109.40257 * 169.02673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 8 4.1450 -0.0205 -0.4445 7 7 4.2148 -1.1797 -2.3349 8 6 3.4987 -1.9074 -3.3914 9 6 3.9097 -1.3235 -4.7515 10 6 5.4340 -1.3689 -4.8800 11 6 6.0661 -0.5146 -3.7787 12 1 5.7051 0.5105 -3.8612 13 7 7.5240 -0.5325 -3.9212 14 6 8.1399 0.3475 -4.7707 15 1 7.5507 1.0550 -5.3353 16 6 9.5213 0.3309 -4.9054 17 7 10.2392 -0.5311 -4.2169 18 14 10.3614 1.5318 -6.0636 19 1 10.0590 2.9223 -5.6395 20 1 11.8293 1.3106 -6.0266 21 1 9.8636 1.3166 -7.4460 22 6 5.6790 -1.0841 -2.4107 23 7 2.0183 -0.6906 1.1961 24 6 2.8578 0.0586 2.1226 25 6 2.8767 -0.6214 3.4942 26 6 3.2230 -2.1024 3.2992 27 6 2.0607 -2.7788 2.5682 28 6 1.6712 -1.9669 1.3663 29 8 1.0052 -2.5004 0.5046 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 -1.2057 34 1 1.6054 -0.2617 -2.1370 35 1 3.7617 -2.9644 -3.3498 36 1 2.4240 -1.7905 -3.2516 37 1 3.5690 -0.2907 -4.8249 38 1 3.4596 -1.9126 -5.5506 39 1 5.7280 -0.9801 -5.8550 40 1 5.7760 -2.3991 -4.7818 41 1 8.0532 -1.1677 -3.4139 42 1 11.2046 -0.5429 -4.3113 43 1 6.0434 -0.4237 -1.6238 44 1 6.1167 -2.0747 -2.2882 45 1 3.8725 0.1103 1.7281 46 1 2.4639 1.0694 2.2288 47 1 1.8969 -0.5335 3.9636 48 1 3.6304 -0.1495 4.1247 49 1 3.3711 -2.5755 4.2700 50 1 4.1322 -2.1915 2.7045 51 1 1.2078 -2.8604 3.2418 52 1 2.3649 -3.7755 2.2487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999148908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:33 Heat of formation + Delta-G solvation = -63.837565 kcal Electronic energy + Delta-G solvation = -31136.464808 eV Core-core repulsion = 27135.764485 eV Total energy + Delta-G solvation = -4000.700323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06965 -39.67811 -37.33201 -36.52887 -35.35864 -34.45579 -32.23391 -31.49758 -31.15193 -29.68249 -28.92132 -27.56122 -24.97379 -24.63250 -23.84307 -23.26627 -22.01049 -21.35794 -20.07864 -18.92963 -18.33654 -17.18518 -17.16396 -16.86372 -16.20354 -15.92106 -15.22478 -15.15471 -14.68503 -14.46665 -14.40894 -14.06292 -13.99158 -13.87186 -13.57843 -13.44003 -13.36299 -12.95514 -12.86199 -12.68517 -12.37038 -12.27058 -12.13917 -11.89861 -11.79271 -11.43411 -11.20661 -11.16662 -11.12222 -10.91541 -10.89792 -10.88583 -10.60702 -10.39585 -10.32771 -10.09543 -9.72204 -9.52290 -9.40628 -8.90693 -8.71849 -8.32594 -6.98763 -5.77780 -3.07304 2.55508 2.84380 2.92804 3.20305 3.43634 3.48080 3.49041 4.35534 4.51773 4.55208 4.57603 4.58725 4.61231 4.77418 5.00596 5.08160 5.13150 5.18063 5.20377 5.27902 5.35732 5.36782 5.42718 5.47696 5.55034 5.57189 5.59903 5.62050 5.64429 5.69492 5.75700 5.78957 5.80211 5.84873 5.89467 6.04211 6.07964 6.10822 6.17873 6.28704 6.41269 6.48813 6.57216 6.76024 6.90347 7.06330 7.46119 7.66407 7.68504 8.10536 8.39156 8.42587 9.51304 10.06976 10.42125 11.44715 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002757 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.194006 B =10152.494803 C =10892.082746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.160 3.840 3 H 0.092 0.908 4 C -0.164 4.164 5 C 0.515 3.485 6 O -0.545 6.545 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.132 4.132 10 C -0.137 4.137 11 C 0.169 3.831 12 H 0.049 0.951 13 N -0.721 5.721 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.108 3.892 23 N -0.582 5.582 24 C 0.111 3.889 25 C -0.135 4.135 26 C -0.125 4.125 27 C -0.134 4.134 28 C 0.516 3.484 29 O -0.559 6.559 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.095 0.905 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.316 -2.657 13.175 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.056 3.944 3 H 0.110 0.890 4 C -0.204 4.204 5 C 0.304 3.696 6 O -0.423 6.423 7 N -0.339 5.339 8 C -0.015 4.015 9 C -0.171 4.171 10 C -0.178 4.178 11 C 0.059 3.941 12 H 0.067 0.933 13 N -0.362 5.362 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.015 4.015 23 N -0.313 5.313 24 C -0.012 4.012 25 C -0.173 4.173 26 C -0.163 4.163 27 C -0.174 4.174 28 C 0.305 3.695 29 O -0.440 6.440 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.113 0.887 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.227 -2.467 13.113 25.073 hybrid contribution 0.826 0.402 -0.657 1.129 sum -20.402 -2.064 12.456 23.993 Atomic orbital electron populations 1.22206 0.94421 1.04282 1.01765 1.20802 0.93947 0.96234 0.83458 0.89009 1.22267 0.92680 1.06080 0.99391 1.20591 0.89829 0.78116 0.81072 1.90594 1.70409 1.42952 1.38391 1.48111 1.07831 1.54032 1.23937 1.21846 0.96333 0.95931 0.87403 1.22005 0.98285 1.01112 0.95735 1.22277 0.92457 1.01248 1.01791 1.20454 0.86140 0.96750 0.90805 0.93322 1.42307 0.99471 1.42565 1.51885 1.19163 0.89848 1.11038 1.16980 0.91245 1.24742 0.96255 0.99453 1.00353 1.69653 1.05473 1.38377 1.44540 0.86262 0.78541 0.80751 0.80595 1.21236 1.21668 1.21276 1.21933 0.78025 1.01526 1.00013 1.47223 1.49803 1.11139 1.23181 1.21588 0.96817 0.94519 0.88230 1.21927 1.02572 0.96043 0.96752 1.21657 0.98265 0.95326 1.01007 1.21647 1.00141 0.99873 0.95721 1.20074 0.79538 0.81633 0.88270 1.90582 1.40529 1.69615 1.43273 0.91721 0.89958 0.92678 0.86169 0.88534 0.91522 0.90207 0.91897 0.91416 0.91628 0.92543 0.78231 0.93417 0.89073 0.92060 0.89259 0.91206 0.91395 0.89878 0.90788 0.90831 0.88680 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.08 37.16 0.34 -1.24 16 2 C 0.16 1.75 2.20 -67.93 -0.15 1.60 16 3 H 0.09 1.01 7.60 -51.93 -0.39 0.61 16 4 C -0.16 -1.94 3.35 -27.88 -0.09 -2.03 16 5 C 0.52 7.77 7.56 -10.99 -0.08 7.69 16 6 O -0.55 -9.47 12.61 5.56 0.07 -9.40 16 7 N -0.61 -9.22 2.97 -172.54 -0.51 -9.74 16 8 C 0.11 1.34 6.37 -3.49 -0.02 1.32 16 9 C -0.13 -1.75 6.10 -26.39 -0.16 -1.91 16 10 C -0.14 -2.39 5.47 -26.69 -0.15 -2.54 16 11 C 0.17 3.42 2.92 -67.83 -0.20 3.22 16 12 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 13 N -0.72 -18.16 5.12 -53.33 -0.27 -18.43 16 14 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 18 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.11 1.96 5.90 -3.73 -0.02 1.94 16 23 N -0.58 -6.44 2.24 -167.26 -0.37 -6.82 16 24 C 0.11 1.08 5.76 -4.39 -0.03 1.06 16 25 C -0.14 -0.98 6.03 -26.50 -0.16 -1.14 16 26 C -0.12 -0.96 6.03 -26.52 -0.16 -1.12 16 27 C -0.13 -1.18 6.03 -28.10 -0.17 -1.34 16 28 C 0.52 6.07 6.88 -11.87 -0.08 5.99 16 29 O -0.56 -7.90 12.45 5.56 0.07 -7.83 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.92 6.00 -51.93 -0.31 0.61 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.12 1.55 5.52 -51.93 -0.29 1.27 16 34 H 0.10 0.96 7.70 -51.93 -0.40 0.56 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.81 5.93 -51.93 -0.31 0.51 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.09 1.84 7.01 -51.93 -0.36 1.48 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.11 6.30 -51.93 -0.33 0.78 16 46 H 0.07 0.59 8.03 -51.93 -0.42 0.18 16 47 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.69 8.12 -51.92 -0.42 0.27 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -32.63 394.47 -9.76 -42.40 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -9.01 Total: 9.66 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.38 Total: 4.24 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.44 Total: -62.44 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.14 Total: -17.23 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.63 -9.76 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999148908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.439 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds