Wall clock time and date at job start Tue Mar 31 2020 20:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.50698 * 109.47184 * 175.00464 * 4 2 1 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.46924 * 120.62981 * 359.71541 * 7 5 4 9 9 C 1.53618 * 108.54299 * 126.37305 * 8 7 5 10 10 C 1.53038 * 109.24352 * 54.85410 * 9 8 7 11 11 C 1.53042 * 109.53856 * 298.51127 * 10 9 8 12 12 H 1.08995 * 109.49479 * 301.41314 * 11 10 9 13 13 N 1.46497 * 109.52329 * 181.33431 * 11 10 9 14 14 C 1.36941 * 120.00429 * 85.14532 * 13 11 10 15 15 H 1.08004 * 119.99406 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00363 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99641 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00017 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47208 * 59.99940 * 18 16 14 20 20 H 1.48499 * 109.47122 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46964 * 299.99890 * 18 16 14 22 22 C 1.46929 * 120.63006 * 179.97438 * 7 5 4 23 23 N 1.46497 * 109.47340 * 120.00250 * 2 1 3 24 24 C 1.45753 * 117.94669 * 239.73864 * 23 2 1 25 25 C 1.53106 * 110.38339 * 160.73865 * 24 23 2 26 26 C 1.53341 * 108.52851 * 51.11698 * 25 24 23 27 27 C 1.53071 * 108.42559 * 292.30626 * 26 25 24 28 28 C 1.33356 * 117.94606 * 59.99206 * 23 2 1 29 29 O 1.21276 * 118.24493 * 2.21259 * 28 23 2 30 30 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 31 31 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 33 33 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 34 34 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 35 35 H 1.08999 * 109.58555 * 246.20421 * 8 7 5 36 36 H 1.08996 * 109.58826 * 6.62389 * 8 7 5 37 37 H 1.09004 * 109.63577 * 294.86133 * 9 8 7 38 38 H 1.09001 * 109.45970 * 174.74125 * 9 8 7 39 39 H 1.09004 * 109.46083 * 178.48950 * 10 9 8 40 40 H 1.08992 * 109.44845 * 58.52752 * 10 9 8 41 41 H 0.97004 * 119.99972 * 265.14743 * 13 11 10 42 42 H 0.97003 * 119.99526 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.58761 * 353.36851 * 22 7 5 44 44 H 1.08991 * 109.58780 * 113.65362 * 22 7 5 45 45 H 1.08995 * 109.30155 * 281.23523 * 24 23 2 46 46 H 1.08999 * 109.30131 * 40.60886 * 24 23 2 47 47 H 1.08997 * 109.80755 * 291.32087 * 25 24 23 48 48 H 1.09006 * 109.53852 * 170.74851 * 25 24 23 49 49 H 1.09004 * 109.67253 * 172.57595 * 26 25 24 50 50 H 1.09007 * 109.67579 * 52.04232 * 26 25 24 51 51 H 1.08996 * 109.39664 * 288.77436 * 27 26 25 52 52 H 1.08996 * 109.40257 * 169.02673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 8 4.1450 -0.0205 -0.4445 7 7 4.2148 -1.1797 -2.3349 8 6 3.4987 -1.9074 -3.3914 9 6 3.9097 -1.3235 -4.7515 10 6 5.4340 -1.3689 -4.8800 11 6 6.0661 -0.5146 -3.7787 12 1 5.7051 0.5105 -3.8612 13 7 7.5240 -0.5325 -3.9212 14 6 8.1399 0.3475 -4.7707 15 1 7.5507 1.0550 -5.3353 16 6 9.5213 0.3309 -4.9054 17 7 10.2392 -0.5311 -4.2169 18 14 10.3614 1.5318 -6.0636 19 1 10.0590 2.9223 -5.6395 20 1 11.8293 1.3106 -6.0266 21 1 9.8636 1.3166 -7.4460 22 6 5.6790 -1.0841 -2.4107 23 7 2.0183 -0.6906 1.1961 24 6 2.8578 0.0586 2.1226 25 6 2.8767 -0.6214 3.4942 26 6 3.2230 -2.1024 3.2992 27 6 2.0607 -2.7788 2.5682 28 6 1.6712 -1.9669 1.3663 29 8 1.0052 -2.5004 0.5046 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -1.7715 -1.2057 34 1 1.6054 -0.2617 -2.1370 35 1 3.7617 -2.9644 -3.3498 36 1 2.4240 -1.7905 -3.2516 37 1 3.5690 -0.2907 -4.8249 38 1 3.4596 -1.9126 -5.5506 39 1 5.7280 -0.9801 -5.8550 40 1 5.7760 -2.3991 -4.7818 41 1 8.0532 -1.1677 -3.4139 42 1 11.2046 -0.5429 -4.3113 43 1 6.0434 -0.4237 -1.6238 44 1 6.1167 -2.0747 -2.2882 45 1 3.8725 0.1103 1.7281 46 1 2.4639 1.0694 2.2288 47 1 1.8969 -0.5335 3.9636 48 1 3.6304 -0.1495 4.1247 49 1 3.3711 -2.5755 4.2700 50 1 4.1322 -2.1915 2.7045 51 1 1.2078 -2.8604 3.2418 52 1 2.3649 -3.7755 2.2487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999148908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:32 Heat of formation + Delta-G solvation = -83.731730 kcal Electronic energy + Delta-G solvation = -31137.327483 eV Core-core repulsion = 27135.764485 eV Total energy + Delta-G solvation = -4001.562998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99534 -40.86663 -38.69983 -37.36019 -36.22426 -36.18080 -33.88749 -32.76095 -32.30925 -30.53573 -30.31662 -28.78163 -26.30150 -25.68194 -25.32922 -24.18219 -23.40428 -22.22412 -21.46308 -20.18418 -19.25462 -19.11024 -18.22319 -17.85766 -17.24742 -16.92017 -16.64392 -16.31715 -16.10601 -15.60707 -15.39625 -15.28862 -15.17460 -15.06017 -14.77529 -14.71041 -14.51436 -14.16284 -13.97404 -13.83522 -13.66739 -13.16925 -13.00741 -12.96170 -12.84639 -12.75561 -12.61901 -12.38965 -12.26520 -12.19325 -12.18322 -11.86134 -11.83953 -11.80687 -11.73224 -11.70930 -11.58818 -10.92288 -10.71155 -10.33657 -9.66882 -9.57428 -9.05168 -7.97172 -5.27126 1.45036 1.48349 1.54385 1.65019 1.69286 1.96498 2.12736 2.54969 3.35327 3.50494 3.60971 3.76864 3.84950 3.90536 3.93322 3.96420 3.99634 4.06770 4.11239 4.25647 4.26755 4.33333 4.37281 4.49170 4.54200 4.58559 4.60781 4.70017 4.75247 4.79093 4.80291 4.82946 4.86101 4.91913 4.97916 5.01658 5.05380 5.10686 5.11108 5.14180 5.32830 5.36658 5.37134 5.42975 5.50991 5.57702 5.66365 6.24138 6.46023 6.62726 7.19873 7.23845 7.29909 8.02381 8.27142 9.26018 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.002757 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.194006 B =10152.494803 C =10892.082746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.089 0.911 4 C -0.152 4.152 5 C 0.508 3.492 6 O -0.573 6.573 7 N -0.608 5.608 8 C 0.106 3.894 9 C -0.121 4.121 10 C -0.128 4.128 11 C 0.169 3.831 12 H 0.033 0.967 13 N -0.735 5.735 14 C -0.242 4.242 15 H 0.073 0.927 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.974 3.026 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.276 1.276 22 C 0.123 3.877 23 N -0.584 5.584 24 C 0.109 3.891 25 C -0.128 4.128 26 C -0.121 4.121 27 C -0.132 4.132 28 C 0.506 3.494 29 O -0.587 6.587 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.372 0.628 42 H 0.252 0.748 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.049 0.951 51 H 0.116 0.884 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.875 -2.453 13.218 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.108 0.892 4 C -0.193 4.193 5 C 0.298 3.702 6 O -0.453 6.453 7 N -0.341 5.341 8 C -0.015 4.015 9 C -0.160 4.160 10 C -0.168 4.168 11 C 0.060 3.940 12 H 0.051 0.949 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.091 0.909 16 C -0.266 4.266 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.202 1.202 22 C -0.001 4.001 23 N -0.314 5.314 24 C -0.013 4.013 25 C -0.166 4.166 26 C -0.159 4.159 27 C -0.171 4.171 28 C 0.296 3.704 29 O -0.470 6.470 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.204 0.796 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.114 0.886 49 H 0.116 0.884 50 H 0.068 0.932 51 H 0.134 0.866 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.851 -2.252 13.148 27.327 hybrid contribution 1.580 0.352 -0.636 1.739 sum -22.271 -1.900 12.512 25.615 Atomic orbital electron populations 1.22100 0.92804 1.03536 1.03067 1.20933 0.95126 0.95933 0.83196 0.89249 1.22257 0.89719 1.06148 1.01127 1.21289 0.91234 0.77285 0.80371 1.90599 1.71264 1.44072 1.39364 1.48194 1.06404 1.54462 1.25041 1.22084 0.97770 0.95860 0.85834 1.21947 0.94620 1.02138 0.97303 1.22076 0.95712 0.99888 0.99172 1.20594 0.83699 0.96662 0.93024 0.94909 1.42488 1.01552 1.42017 1.51500 1.19516 0.90283 1.10910 1.16630 0.90883 1.25565 0.97005 1.01550 1.02455 1.69814 1.05294 1.40342 1.46463 0.85211 0.76989 0.78663 0.78902 1.20555 1.22042 1.20180 1.21478 0.80462 1.00419 0.97748 1.47340 1.49474 1.11227 1.23354 1.21610 0.94947 0.95517 0.89225 1.21920 1.03918 0.95409 0.95340 1.21635 0.96764 0.95882 1.01594 1.21684 1.01237 0.99211 0.95013 1.20628 0.79125 0.81817 0.88871 1.90560 1.41857 1.70139 1.44409 0.89935 0.91560 0.91913 0.86647 0.85926 0.90747 0.87012 0.91594 0.88207 0.93460 0.92917 0.79573 0.93939 0.91856 0.92286 0.92449 0.90031 0.89724 0.88623 0.88422 0.93206 0.86569 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.08 71.98 0.65 -1.96 16 2 C 0.15 3.13 2.20 44.99 0.10 3.23 16 3 H 0.09 1.88 7.60 -2.38 -0.02 1.86 16 4 C -0.15 -3.35 3.35 29.85 0.10 -3.25 16 5 C 0.51 15.12 7.56 87.66 0.66 15.78 16 6 O -0.57 -20.43 12.61 -3.04 -0.04 -20.47 16 7 N -0.61 -18.16 2.97 -818.18 -2.43 -20.58 16 8 C 0.11 2.38 6.37 86.51 0.55 2.93 16 9 C -0.12 -2.89 6.10 30.81 0.19 -2.70 16 10 C -0.13 -4.40 5.47 30.62 0.17 -4.24 16 11 C 0.17 6.99 2.92 45.06 0.13 7.12 16 12 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 13 N -0.74 -38.25 5.12 -322.64 -1.65 -39.91 16 14 C -0.24 -13.70 9.93 84.03 0.83 -12.86 16 15 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 16 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 17 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 18 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 C 0.12 4.60 5.90 86.35 0.51 5.11 16 23 N -0.58 -12.47 2.24 -802.28 -1.80 -14.27 16 24 C 0.11 2.09 5.76 86.56 0.50 2.59 16 25 C -0.13 -1.66 6.03 30.74 0.19 -1.47 16 26 C -0.12 -1.72 6.03 30.73 0.19 -1.53 16 27 C -0.13 -2.14 6.03 29.71 0.18 -1.96 16 28 C 0.51 11.44 6.88 87.71 0.60 12.04 16 29 O -0.59 -16.04 12.45 -3.02 -0.04 -16.08 16 30 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 1.36 6.00 -2.39 -0.01 1.35 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 2.78 5.52 -2.39 -0.01 2.76 16 34 H 0.12 2.03 7.70 -2.39 -0.02 2.01 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 1.86 5.93 -2.39 -0.01 1.84 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.37 20.77 7.80 -92.71 -0.72 20.05 16 42 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.06 2.71 7.01 -2.39 -0.02 2.69 16 44 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 1.48 6.30 -2.39 -0.02 1.47 16 46 H 0.08 1.32 8.03 -2.39 -0.02 1.30 16 47 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 48 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.05 0.94 8.12 -2.38 -0.02 0.92 16 51 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -73.20 394.47 2.56 -70.64 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.18 Total: 36.74 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 6.01 Total: 15.01 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -5.59 Total: -134.57 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.08 Total: -36.54 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -73.20 2.56 -70.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999148908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.087 kcal (2) G-P(sol) polarization free energy of solvation -73.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds